BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg483511
Length=1217
Score E
Sequences producing significant alignments: (Bits) Value
AT2G43945.1 | Symbols: | unknown protein; LOCATED IN: chloropl... 1568 0.0
AT3G59870.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 638 0.0
> AT2G43945.1 | Symbols: | unknown protein; LOCATED IN: chloroplast;
BEST Arabidopsis thaliana protein match is: unknown protein
(TAIR:AT3G59870.1); Has 292 Blast hits to 292 proteins
in 84 species: Archae - 0; Bacteria - 122; Metazoa - 0; Fungi
- 0; Plants - 46; Viruses - 0; Other Eukaryotes - 124 (source:
NCBI BLink). | chr2:18197844-18200194 REVERSE LENGTH=1227
Length=1227
Score = 1568 bits (849), Expect = 0.0
Identities = 1136/1260 (90%), Gaps = 77/1260 (6%)
Strand=Plus/Plus
Query 1 TTGTTTTTGTATGCATTTGGTCtgtgtgttgtgttgtgt-T-TTCTTCTTCTT------- 51
||||||||||||||||||||||||||||||||||||| | | |||||||||||
Sbjct 2 TTGTTTTTGTATGCATTTGGTCTGTGTGTTGTGTTGTTTATCTTCTTCTTCTTCAACCCG 61
Query 52 --C---TTCA-ATCCGAC-GGGAAAAGGAGTTCCGACAAAAATCAAGAACTGAAAGATTT 104
| | || ||||||| ||||||| |||||||||||| |||| |||||||||||||||
Sbjct 62 ACCAAATACACATCCGACGGGGAAAAAGAGTTCCGACAAGAATCGAGAACTGAAAGATTT 121
Query 105 GTCATTTGTCTCTCAAATATCTGCGGAGAGAAGAGAAATTATCAAATCAAGAAGACAGTG 164
||||||||||||||||||||||| |||||||||||||| | | ||| ||||||||||||
Sbjct 122 GTCATTTGTCTCTCAAATATCTGTGGAGAGAAGAGAAA-T-TGGAATAAAGAAGACAGTG 179
Query 165 TTGT--------------G-G-GAGAGATGAGTTCGTCTCTACCTCTGAGGCTACTTCTT 208
|||| | | |||||||||||||||||||||||||||||||| |||
Sbjct 180 TTGTGAGAGAGAGAGAGAGAGAGAGAGATGAGTTCGTCTCTACCTCTGAGGCTA---CTT 236
Query 209 CTTCCTCTTACAACTTCTCTGA-TT-T-CTCCTCCT-C-CC-CCAGATTCTTTCCATGCT 262
|||||||||||||||||||||| || | |||||||| | || ||||||||||||||||||
Sbjct 237 CTTCCTCTTACAACTTCTCTGATTTCTCCTCCTCCTCCTCCTCCAGATTCTTTCCATGCT 296
Query 263 CCTTC-TCCGTTCAGATCGAAAAACCCTAATTTCAATCGCCGATTGtcttcttcttcttc 321
||||| | |||||||||||||||||||||||||||| ||||||||| ||
Sbjct 297 CCTTCGT-CGTTCAGATCGAAAAACCCTAATTTCAAACGCCGATTG------------TC 343
Query 322 ttcttcttctacctcttgttcttcccagtcacagcttctctctGGGAGATTCAGATCCTC 381
|||||| | | ||| ||||||||||||||| |||||| |||||||||||| ||||||||
Sbjct 344 TTCTTC-T-T-CCTGTTGTTCTTCCCAGTCGCAGCTTTTCTCTGGGAGATGCAGATCCTA 400
Query 382 TTCTCCGTGTGTTACCATGTGCTTACCTGAACACCCGAGAAATCAAGAGAACACAGAAAT 441
||| | ||||||||||||||||||||| |||||| ||||||||||||||||||||||||
Sbjct 401 TTCGCGGTGTGTTACCATGTGCTTACCAGAACACATGAGAAATCAAGAGAACACAGAAAT 460
Query 442 CTTGACAGATCAAGATGACCACATTGAATGTGTGCTTGAATCGGATGAAGATTCAGGCCT 501
|||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 461 CTTGACAGATAAAGATGACCACATTGAATGTGTGCTTGAATCGGATGAAGATTCTGGCCT 520
Query 502 CAGGATTCCGACTCAGGCACAGGCTATCGTTGAAGGATCTGGTTCAGTTGCAGTGTCAGA 561
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 521 CAGGATTCCGACTCAAGCACAGGCTATCGTTGAAGGATCTGGTTCAGTTGCAGTGTCAGA 580
Query 562 GCTAAAACCGGCCGCTGATGTAGATTACATACAAGAGCTATTAGCGATACAACAACAAGG 621
||||||||| || ||||||||||||||||||||||||||||| |||||||| || |||||
Sbjct 581 GCTAAAACCCGCTGCTGATGTAGATTACATACAAGAGCTATTGGCGATACAGCAGCAAGG 640
Query 622 GCCTAGATCAATTGGCTTCTTTGGGACAAGAAATATGGGTTTCATGCATCAAGAACTGAT 681
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 641 TCCTAGATCAATTGGCTTCTTTGGGACAAGAAATATGGGTTTCATGCATCAAGAACTGAT 700
Query 682 TGAGATACTTAGCTACGCCATGGTTATAACTAAAAATCATATATACACATCAGGTGCATC 741
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 701 TGAGATACTTAGCTACGCCATGGTTATAACCAAAAATCATATATACACATCAGGTGCATC 760
Query 742 TGGAACTAATGCGGCAGTCATCAGAGGTGCATTGAGAGCAGAGAGACCAGAGCTGCTTAC 801
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 761 TGGAACTAATGCTGCAGTCATCAGAGGTGCATTGAGAGCAGAGAGACCAGAGCTGCTTAC 820
Query 802 AGTAATAT-TACCCCAAAGTTTGAAAAAACAACCTCCTGAGAGCCAGGAACTCTTGTCTA 860
|||||| | ||||||||||||||||||||||||||||||||||||| ||||| |||||||
Sbjct 821 AGTAAT-TCTACCCCAAAGTTTGAAAAAACAACCTCCTGAGAGCCAAGAACTATTGTCTA 879
Query 861 AAGTACAAAACGTGGTAGAAAAGCCACACAATGACCATTTGCCATTATTAGAAGCCAGCA 920
|||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||
Sbjct 880 AAGTACAAAACGTGGTAGAAAAGCCACATAATGACCATTTGCCATTGTTAGAAGCCAGCA 939
Query 921 GGCTGTGTAATATGGACATCATATCACAAGTACAACAAGTGATCTGCTTCGCGTTTCATG 980
|| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 940 GGTTGTGTAATATGGACATCATATCACAAGTTCAACAAGTGATCTGCTTCGCGTTTCATG 999
Query 981 ACAGTAAGCTTCTCATGGAGACATGTCAAGAAGCTAAAAATCTACGCAAGATTGTCACTC 1040
||||||||||||| |||||||||||||||||||| |||||||| ||||||||||||||||
Sbjct 1000 ACAGTAAGCTTCTTATGGAGACATGTCAAGAAGCCAAAAATCTGCGCAAGATTGTCACTC 1059
Query 1041 TCTTCTACCTCGATTGATTCTC-T-CACTCTTTTATCTTCTTCTCGTTACAAAACAGAGA 1098
|||||||||||||||||||| | | |||||||| || |||||||||||||||||||||||
Sbjct 1060 TCTTCTACCTCGATTGATTCACATTCACTCTTT-ATTTTCTTCTCGTTACAAAACAGAGA 1118
Query 1099 AGCTAAGATAAGCCTCGTTGTAAATTATGAAAATCTTCTTGATTAAACAAACACACACA- 1157
|| ||| | |||| |||||||||||||| |||| |||||||||||||||||||
Sbjct 1119 AGATAA--T---CCTCCTTGTAAATTATGAA--TCTT---GATTAAACAAACACACACAA 1168
Query 1158 CAACCAATTATATTCTTTTGTCTAAATTTTGACACACATCAGTGCTATTTTTATAAGATT 1217
| || ||||||||||||||||||||||||||| |||||||||||||||||||||| ||||
Sbjct 1169 CCAC-AATTATATTCTTTTGTCTAAATTTTGATACACATCAGTGCTATTTTTATAGGATT 1227
> AT3G59870.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures;
EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT2G43945.1);
Has 292 Blast hits to 292 proteins in 84 species: Archae -
0; Bacteria - 122; Metazoa - 0; Fungi - 0; Plants - 46; Viruses
- 0; Other Eukaryotes - 124 (source: NCBI BLink). | chr3:22116109-22118241
REVERSE LENGTH=1308
Length=1308
Score = 638 bits (345), Expect = 0.0
Identities = 491/562 (87%), Gaps = 8/562 (1%)
Strand=Plus/Plus
Query 500 CTCAGGATTCCGACTCAGGCACAGGCTATCGTTGAAGGATCTGGTTCAGTTGCAGTGTCA 559
||| ||||||| || || || || ||||||||||||||| |||||||| |||| |||||
Sbjct 499 CTCCGGATTCCAACACAAGCTCAAGCTATCGTTGAAGGACCTGGTTCACTTGCTGTGTCG 558
Query 560 GAGCTAAAACCG-G-CCGCTGATGTAGATTACATACAAGAGCTATTAGCGATACAACAAC 617
|||||| || || | || ||||||||||||| |||||||| || || || ||||| ||||
Sbjct 559 GAGCTACAA-CGAGTCC-CTGATGTAGATTATATACAAGAACTGTTGGCTATACAGCAAC 616
Query 618 AAGGGCCTAGATCAATTGGCTTCTTTGGGACAAGAAATATGGGTTTCATGCATCAAGAAC 677
|||| || ||| |||||||||||||||| || |||||||||||||||||||||||||| |
Sbjct 617 AAGGACCAAGAACAATTGGCTTCTTTGGAACTAGAAATATGGGTTTCATGCATCAAGAGC 676
Query 678 TGATTGAGATACTTAGCTACGCCATGGTTATAACTAAAAATCATATATACACATCAGGTG 737
| ||| |||| |||||||| || ||||||||||||||||| ||||| |||||||||||||
Sbjct 677 TCATTCAGATTCTTAGCTATGCTATGGTTATAACTAAAAACCATATCTACACATCAGGTG 736
Query 738 CATCTGGAACTAATGCGGCAGTCATCAGAGGTGCA-TTGAGAGCAGAGAGACCAGAGCTG 796
|| ||||||| ||||| || || || ||||||||| || ||||||||||||||||||||
Sbjct 737 CAGCTGGAACCAATGCAGCTGTTATAAGAGGTGCACTT-AGAGCAGAGAGACCAGAGCTT 795
Query 797 CTTACAGTAATATTACCCCAAAGTTTGAAAAAACAACCTCCTGAGAGCCAGGAACT-CTT 855
|||||||| || ||||| |||||||||||||| ||||||||||| ||||||||||| | |
Sbjct 796 CTTACAGTTATCTTACCTCAAAGTTTGAAAAAGCAACCTCCTGAAAGCCAGGAACTAC-T 854
Query 856 GTCTAAAGTACAAAACGTGGTAGAAAAGCCACACAATGACCATTTGCCATTATTAGAAGC 915
||| ||||||||||||||| |||||||||| ||||| |||||||| || |||||||||||
Sbjct 855 GTCAAAAGTACAAAACGTGATAGAAAAGCCTCACAACGACCATTTACCGTTATTAGAAGC 914
Query 916 CAGCAGGCTGTGTAATATGGACATCATATCACAAGTACAACAAGTGATCTGCTTCGCGTT 975
||||||||| ||||| ||||| |||||||||||||| |||||| | || ||||| |||||
Sbjct 915 CAGCAGGCTATGTAACATGGATATCATATCACAAGTGCAACAAATCATTTGCTTTGCGTT 974
Query 976 TCATGACAGTAAGCTTCTCATGGAGACATGTCAAGAAGCTAAAAATCTACGCAAGATTGT 1035
|||||| |||||||||||||||||||||||||||||||||| |||||| || ||||||||
Sbjct 975 TCATGATAGTAAGCTTCTCATGGAGACATGTCAAGAAGCTAGAAATCTCCGGAAGATTGT 1034
Query 1036 CACTCTCTTCTACCTCGATTGA 1057
|| ||||||||||| ||||||
Sbjct 1035 TACCCTCTTCTACCTGGATTGA 1056
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59788849095
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5