BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg483513
Length=1287
Score E
Sequences producing significant alignments: (Bits) Value
AT2G43950.1 | Symbols: OEP37, ATOEP37 | chloroplast outer envel... 1840 0.0
> AT2G43950.1 | Symbols: OEP37, ATOEP37 | chloroplast outer envelope
protein 37 | chr2:18200324-18202729 REVERSE LENGTH=1346
Length=1346
Score = 1840 bits (996), Expect = 0.0
Identities = 1219/1319 (92%), Gaps = 45/1319 (3%)
Strand=Plus/Plus
Query 1 TTGTACTTGTTACACTCGAATCTCGTGTTCGCGACTTTGCGATAGATTCTCTCAAATCCA 60
|||||||||||| ||| ||||| |||||||||||||||||||||||||||||||||||||
Sbjct 20 TTGTACTTGTTAAACTTGAATCCCGTGTTCGCGACTTTGCGATAGATTCTCTCAAATCCA 79
Query 61 ATTCCAATGGCGGATCCAtcttctcaaaaccctaacctcaccactccccctcctcctcca 120
||||||||||||||||||||||||||||||||||||||| ||||| | || |||
Sbjct 80 ATTCCAATGGCGGATCCATCTTCTCAAAACCCTAACCTCGCCACT----C-CC-CCT--- 130
Query 121 cctccttcttcttctccttcaccaacccaTCAAATTCAATCTGGTACCTCGGAATCATCG 180
||| | ||||||||||||||||||||||||||||||||||||| |||||||||| ||||
Sbjct 131 CCT-C--CTTCTTCTCCTTCACCAACCCATCAAATTCAATCTGGAACCTCGGAATTATCG 187
Query 181 CCACCGACTCGGCCCCCTTGCTCTACCTTGTCCTTTCTCAAGACTGCTAACAGGCCAAAA 240
|||||| |||| || |||||||||||||||||||||||||||||||||||| | ||||||
Sbjct 188 CCACCGTCTCGACCGCCTTGCTCTACCTTGTCCTTTCTCAAGACTGCTAACCGACCAAAA 247
Query 241 CTCCGTGTGACATCTGAATTCGACAGCGATAGTCTCCTTTTCTTAAACAAAGTGTCTTGT 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 248 CTCCGTGTGACATCTGAATTCGACAGCGATAGTCTCCTTTTCTTAAACAAAGTGTCTTGT 307
Query 301 AAGCTCTTCGATAACCTCGCCAAGCTCAAACTCTCGTTTCAGAACAATTCCCAGCGCGAG 360
||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||
Sbjct 308 AAGCTCTTCGATAACCTTGCCAAGCTTAAACTCTCGTTTCAGAACAATTCCCAGCGCGAG 367
Query 361 ATTTCACAGCCTCTGGTCTCGTTTACTTCCAAACACGTCTCTGTTCTCTATGATGTCGAG 420
||||||||||||| |||||| ||||||||||||||||| ||||||||||||||||||||
Sbjct 368 ATTTCACAGCCTCAGGTCTCTTTTACTTCCAAACACGTTTCTGTTCTCTATGATGTCGAA 427
Query 421 GAGAAGAACACTTTCATCAAGAGCACTCTCGATGTTCACCCTCGTCTTCAGCTCCGAGCT 480
|||||||| |||||||| ||||||||||||||||||||||| ||||||||||||||||||
Sbjct 428 GAGAAGAATACTTTCATTAAGAGCACTCTCGATGTTCACCCGCGTCTTCAGCTCCGAGCT 487
Query 481 CTTCATAATGTCAAGGCACAACAAGGAGAAGTTGCTATGGAGGCAAATCTAACTGAACCT 540
||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 488 CTTCATAATGTTAAGGCACAACAAGGAGAAGTTGCTATGGAGGCAAATCTGACTGAACCT 547
Query 541 GGCTACTCTCTAGAGCTTTCATCACCTGTTCCTATTGGTTACCCAAGAGCGACTCTTAAA 600
||||||||||| ||||||||||||||||| |||||||||||||||||||| |||||||||
Sbjct 548 GGCTACTCTCTGGAGCTTTCATCACCTGTGCCTATTGGTTACCCAAGAGCAACTCTTAAA 607
Query 601 TTCCCACTTGGCGAAATTTCGTTACAAGAAAAAGAAGATGAGGAGGAGGAGAAGCAGAAA 660
||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct 608 TTCCCACTTGGCGAAATTTCGTTACAAGAAAAAGATGAGGAGGAGGAGGAGAAGCAGAAA 667
Query 661 AGAACTTTATCTGTTAACGGGATCCTCAAACGTCAAGTCATGAATGGTGTTTGTACTGCT 720
||||||||||||||||| |||||||||||||||||||| ||||||||||||||||| |||
Sbjct 668 AGAACTTTATCTGTTAATGGGATCCTCAAACGTCAAGTTATGAATGGTGTTTGTACCGCT 727
Query 721 CTATACACAGATGAAGAGTTGAGGCTGAGATATGCTTATAAGGATGATGCATTGTCTTTC 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 728 CTATACACAGATGAAGAGTTGAGGCTGAGATATGCTTATAAGGATGATGCATTGTCTTTC 787
Query 781 ATCCCCAGCATTTCCCTTCCTTCCAATGCTGCATCATTTGCATTCAAACGTCGGTTTAGC 840
||||| || ||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 788 ATCCCAAGTATTTCCCTTCCTTCCAATGCTGCATCATTTGCATTCAAACGGCGGTTTAGC 847
Query 841 CCTTCAGATAAGTTGAGCTATTGGTACAACTTTGATTCAAACATGTGGAGTGCTGTGTAC 900
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 848 CCTTCAGATAAGTTGAGCTATTGGTACAACTTTGATTCAAACATGTGGAGTGCTGTGTAC 907
Query 901 AAACGAACATATGGTAAAGACTACAAACTCAAAGCTGGCTATGATTCTGATGTACGCCTT 960
||||| ||||||||||||||||||||| | ||||||||||||||||||||||| ||||||
Sbjct 908 AAACGCACATATGGTAAAGACTACAAATTAAAAGCTGGCTATGATTCTGATGTTCGCCTT 967
Query 961 GGCTGGGCATCTCTCTGGGTGGGGGACGAAGCTGGAAAAGTGAAAGCGACGCCAATGAAG 1020
|||||||||||||||||||| || || |||||||||||||||||| |||| |||||||||
Sbjct 968 GGCTGGGCATCTCTCTGGGTTGGTGATGAAGCTGGAAAAGTGAAAACGACACCAATGAAG 1027
Query 1021 ATGAAAGTCCAGTTCATGCTTCAAGTTCCACAAGATAACATCAAATCATCAGTCTTGATG 1080
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1028 ATGAAAGTCCAGTTCATGCTTCAAGTTCCACAAGATGACATCAAATCATCAGTCTTGATG 1087
Query 1081 TTCCGAGTCAAGAAAAGATGGGACATTTGATGATATCTTTGAATA--TC-TCTCT--GTA 1135
||||||||||||||||||||||||||||||||| ||||||||||| || ||||| ||
Sbjct 1088 TTCCGAGTCAAGAAAAGATGGGACATTTGATGAAATCTTTGAATAAATCATCTCTTAGTT 1147
Query 1136 --A--------AA-C-C-C-ATAAAA---------GTTGTTTCTTTCTCCTTATATATCA 1172
| || | | | |||||| ||||||| |||||||||||||||||
Sbjct 1148 TCACTTTCTTTAATCTCTCTATAAAACCCATAAAAGTTGTTTGTTTCTCCTTATATATCA 1207
Query 1173 AATCTTTTGCAAAAATAGATACAAAATATTAGAGAGAATAATTGCATTTGTATTTCTATA 1232
||||||||||||| ||||||||||| |||||| ||||||||||| |||||||||| ||
Sbjct 1208 AATCTTTTGCAAAG-TAGATACAAAAGCTTAGAGTGAATAATTGCAATTGTATTTCTGTA 1266
Query 1233 GCTTCTTT--AAATGACCTTTTTCACACGTGAGAGACTA--ATAAATGTTGCTAATTTT 1287
|||| ||| |||||| |||||||||||||| ||||||| ||||||||||||||||||
Sbjct 1267 GCTTTTTTTTAAATGATCTTTTTCACACGTGTGAGACTAGTATAAATGTTGCTAATTTT 1325
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63302887245
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5