BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg483517
Length=1657
Score E
Sequences producing significant alignments: (Bits) Value
AT2G43980.1 | Symbols: AtITPK4, ITPK4 | inositol 1,3,4-trisphos... 2608 0.0
> AT2G43980.1 | Symbols: AtITPK4, ITPK4 | inositol 1,3,4-trisphosphate
5/6-kinase 4 | chr2:18208253-18211644 REVERSE LENGTH=1691
Length=1691
Score = 2608 bits (1412), Expect = 0.0
Identities = 1592/1675 (95%), Gaps = 27/1675 (2%)
Strand=Plus/Plus
Query 1 ATTTATTCTTTTGTTCCTCAGCTGAGAGAGAAGAACG-ATGATGAAAGGGGTTCTACTTG 59
||||||||||||||||||||||||||||||||||| | | ||||||||||||||||||||
Sbjct 1 ATTTATTCTTTTGTTCCTCAGCTGAGAGAGAAGAA-GAACGATGAAAGGGGTTCTACTTG 59
Query 60 ACGAATCTGTACTGTTTAGTCCTAAGAGTGAAGATTCTTCGCCGAGTCTGCGGGAATCAG 119
||||||||||||||||||||||| ||||||||||||||||||| |||||||| |||||||
Sbjct 60 ACGAATCTGTACTGTTTAGTCCTGAGAGTGAAGATTCTTCGCCAAGTCTGCGAGAATCAG 119
Query 120 TCCCGTCGCTTCTCAGGCTGCTTCGTTATTCCATGATCCGAACGGGAATTTCATATGGAC 179
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 120 TCCCGTCGCTTCTCAGGCTGCTTCGTTATTCCATGATCCGAACGGGGATTTCATATGGAC 179
Query 180 TTGATCTTCCGGAAAACAAGGTGGATTTACTGAGGAAAACGGCAGCAGAATATTCGATTA 239
|||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||| |
Sbjct 180 TTGATCTTCCGGAAAACAAGGTGGATCTACTGAGGAAAACGGCAGCAGAATACTCGATCA 239
Query 240 ATTGCTTACCTTTAGAGACGTCTCTGACAAGTGTTACCTTTGGTGATACTCTCAAAGCAT 299
||||||| ||||||||||||||||| || |||||||||||||||||||||||||||||||
Sbjct 240 ATTGCTTGCCTTTAGAGACGTCTCTTACGAGTGTTACCTTTGGTGATACTCTCAAAGCAT 299
Query 300 GGTATAGTGACGGTAGTATTCTGTATGTTGCTTCAAGCAGAAAGGAAGAGATACTGCGTG 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 GGTATAGTGACGGTAGTATTCTGTATGTTGCTTCAAGCAGAAAGGAAGAGATACTGCGTG 359
Query 360 AACTTAGTCCCAGTCAGCTAGTTGTTCTACTCGATGTTGTACAAGGCGATTCACATGAGG 419
|||||||||||||||||||||||||| |||||||||||| |||||||||||| |||||
Sbjct 360 AACTTAGTCCCAGTCAGCTAGTTGTTTTACTCGATGTTG---AAGGCGATTCACTTGAGG 416
Query 420 ATCCTAACATGATTCATATCCATAGTCTTGAGGAGCTGCCGATGACTATTTGCTGCATAA 479
|||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 417 ATCCTAACATAATTCATATCCATAGTCTTGAGGAGCTGCCAATGACTATTTGCTGCATAA 476
Query 480 ACAAAAAGGCAATGGGTGATGGTGCTGCAATAGTTGCTTACATCATGAAGCCATCTCGGA 539
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 477 ACAAAAAGGCAATGGGTGATGGTGCTGCAATAGTTGCTTACATCATGAAGCCATCTCGGG 536
Query 540 TAGAGGACTTTGCCAAGAGGGGTGCTTTACCCATGTATCCTACTTCATGTGGGTTGATAT 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 537 TAGAGGACTTTGCCAAGAGGGGTGCTTTACCCATGTATCCTACTTCATGTGGGTTGATAT 596
Query 600 TTCTGCCCCTCATGTTTGAGTTCCCTCTTGCATCTCAACTCAAACACGCTGATATCATTT 659
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 597 TTCTGCCCCTCATGTTTGAGTTCCCTCTTGCATCTCAACTCAAACACGCTGATATCATTT 656
Query 660 TCCACAAAGCAACTGATGAAATCTTGTCCATTGAACTGAACTGCTCCGACTCAAAATCAT 719
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 657 TCCACAAAGCAACTGATGAAATCTTGTCCATTGAACTGAACTGCTCCGACTCAAAATCAT 716
Query 720 CTGTTGCAGTTACATTCTCTACCGGCATGGAGGAACTGCGAAAGTATATGGAAGATCAAA 779
|||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct 717 CTGTTGCAGTTACATTCTCTACCGGCATGGAGAAACTGAAAAAGTATATGGAAGATCAAA 776
Query 780 ATGCTTGTGCCGTAGTCGACCCTATTCAAAATATATATTCTGTCCTGGACCGACTCAAGA 839
||||||||||| ||||||||||||||| |||||||||| | ||| | |||||||||||||
Sbjct 777 ATGCTTGTGCCATAGTCGACCCTATTCGAAATATATATCCAGTCGTAGACCGACTCAAGA 836
Query 840 TGCAACATATTCTTCTTGGATTAGAGGACCTTACTGCAGCAGGACGGAAGATAAGAGGCG 899
||||||||||||||||||||||||||| |||| |||||||||||| ||||||||||| |
Sbjct 837 TGCAACATATTCTTCTTGGATTAGAGGGCCTTGGTGCAGCAGGACGAAAGATAAGAGGTG 896
Query 900 CCTGCTTTCTCAAGATTGACAGCTATGATGAACCAGATCTGGCTCAGAACTTGTCAAAAG 959
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 897 CCTGCTTTCTCAAGATTGACAGCTATGATGAACCAGATCTGGCTCAGAACTTGTCAAGAG 956
Query 960 CTGGACTCTCTCTTCCATCTATTGTGAAACCTCAGGTTGCCTGTGGTGTTGCTGATGCTC 1019
|||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||
Sbjct 957 CTGGACTCTCTCTTCCATGTATTGTGAAACCACAGGTTGCCTGTGGTGTTGCTGATGCTC 1016
Query 1020 ACAGCATGGCCATTGTCTTCCGAGTGGAGGATTTTAAGGATTTGAACACTCCTGTTCCTG 1079
||||||||||||||||||||||||| |||||||||||| || ||||||||||||||||||
Sbjct 1017 ACAGCATGGCCATTGTCTTCCGAGTCGAGGATTTTAAGAATCTGAACACTCCTGTTCCTG 1076
Query 1080 CCATTATCCAAGAGTATGTGGACCATTCATCCAGGATTTTCAAGTTTTACGTGTTGGGGG 1139
||||||||||||||||||||||||||||||| |||||||| ||||||||||| |||||||
Sbjct 1077 CCATTATCCAAGAGTATGTGGACCATTCATCTAGGATTTTTAAGTTTTACGTCTTGGGGG 1136
Query 1140 AAAAGATCTTTCACGCGGTCAAGAAATCGATCCCTAGTTCTTCTAGTCTGAGGAAAACAG 1199
||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1137 AAACGATCTTTCACGCGGTCAAGAAATCGATCCCTAGTTCTTCTAGTCTGAGGAAATCAG 1196
Query 1200 CCGAGCAAAATGGTCTCAAACCAATTCTCTTTGACAGCTTAAAATCGTTACCTGTT-AGT 1258
| ||| |||||||||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct 1197 CGGAGGAAAATGGTCTCAAACCAATTCTCTTTGACAGCTTAAAATCGTTACCTGTTGA-T 1255
Query 1259 TCCGCAAACCAGAACCCGGTAAACGAGATTGATCTAGAGCTAGTTACAGAGGCAGCTACC 1318
|||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||
Sbjct 1256 TCCGCAAACCAGAACCCGGTAAGCGAGATTGATCTAGAGCTAGTTACAGAAGCAGCTACC 1315
Query 1319 TGGCTCAGAAAGAAGCTTGATCTCACAATCTTCGGCTTTGACGTGGTTATTCAAGAAGGA 1378
||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1316 TGGCTAAGAAAGAAGCTTGATCTCACAATCTTCGGCTTTGACGTAGTTATTCAAGAAGGA 1375
Query 1379 ACAGGAGATCACGTGATAGTAGACTTGAACTACTTACCATCGTTTAAAGAAGTCCCTGAT 1438
||||||||||||||||||||||||||||||||||||||||| ||||||||||| || |||
Sbjct 1376 ACAGGAGATCACGTGATAGTAGACTTGAACTACTTACCATCCTTTAAAGAAGTTCCGGAT 1435
Query 1439 AACATGGCAGTTCCTGCATTCTGGGAAGCCATCAGAAACAGATTCGACCAACATGTCCAA 1498
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1436 AACATCGCAGTTCCTGCATTCTGGGAAGCCATCAGAAACAGATTCGACCAACATGTCCAA 1495
Query 1499 GAGAAGCATTGAATCCAACATTGTGGGAAACGAAAAGAACTCTTCTGTCTGTTTATTTTA 1558
||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||
Sbjct 1496 GAGAAGCATTGAATCCAACATTGTGGGAAGCGAAA----CTCTTCTGTCTGTTTATTTTA 1551
Query 1559 GGAATGACCTGAAGCTGCTTTATGCTTCAGACTCCGAGACTAATAAT--TT-A------T 1609
||||||||||||||||||||||||||||| |||| |||||||||||| || | |
Sbjct 1552 GGAATGACCTGAAGCTGCTTTATGCTTCATACTCTGAGACTAATAATAATTGAGAAACAT 1611
Query 1610 -------GGAATTTTGTAATTTTAAGACCAATCAAGTGAAGtttttttttttttG 1657
|||||||||||||||||||||||| ||||||||||||||||| |||||
Sbjct 1612 CTTTTATGGAATTTTGTAATTTTAAGACCAAACAAGTGAAGTTTTTTTTCTTTTG 1666
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 81877088895
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5