BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg483518
Length=1956
Score E
Sequences producing significant alignments: (Bits) Value
AT2G43990.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 2966 0.0
> AT2G43990.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: chloroplast; EXPRESSED IN: 9 plant structures;
EXPRESSED DURING: 6 growth stages; Has 1419 Blast hits to
494 proteins in 144 species: Archae - 0; Bacteria - 300; Metazoa
- 246; Fungi - 102; Plants - 31; Viruses - 2; Other Eukaryotes
- 738 (source: NCBI BLink). | chr2:18211924-18213922
FORWARD LENGTH=1999
Length=1999
Score = 2966 bits (1606), Expect = 0.0
Identities = 1855/1974 (94%), Gaps = 21/1974 (1%)
Strand=Plus/Plus
Query 1 TTTTTGGTCGAATGTC-CGCAGAATGAATCGAATAACGTCTTCTTCCAATGCCCAAACGA 59
|||||||||||||| | | || |||||||||||||| |||||||| ||||| |||||||
Sbjct 29 TTTTTGGTCGAATG-CTCATAGGATGAATCGAATAACTTCTTCTTCAAATGCGCAAACGA 87
Query 60 AGAAATTTCCTCAGTCTCAGCCGCAGCCGCCGGAGAAAAAGGAGAAAAACCTGAAAATGG 119
|||||||||||||||||||||| ||||||||||||||||| |||||||| ||||||| ||
Sbjct 88 AGAAATTTCCTCAGTCTCAGCCACAGCCGCCGGAGAAAAATGAGAAAAAACTGAAAAGGG 147
Query 120 AGAGATTTCCGGTGAACCCTCTGAGAGGTTTCAGTACAAGAAGCTCTGGAAGCAGTAGTA 179
|||||||||||||||||||| |||||| ||||||||||||||||||||||||||| |||
Sbjct 148 AGAGATTTCCGGTGAACCCTTTGAGAGATTTCAGTACAAGAAGCTCTGGAAGCAGCAGTT 207
Query 180 GCAGCAATGTGAGTGGTTCTGCTTCAACTTCCGGTGAAGCATCCAACGGTTGTCACAGG- 238
| ||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||
Sbjct 208 GTAGCAATGTGAGTGCTTCTGGTTCAACTTCCGGTGAAGCATCCAACGGTTGTCACAGGT 267
Query 239 T-TT--T-T-GCA----TTCTCAT--TC-T-TTC-TCATCTTCTTCTTCGTTGGGAGTTT 284
| || | | || ||||||| || | ||| |||||||||||||||||||||||||
Sbjct 268 TCTTGCTCTCTCATTCTTTCTCATCGTCTTCTTCATCATCTTCTTCTTCGTTGGGAGTTT 327
Query 285 TTCCTCGTAGACCAGTGA-ATTCAGTTGCTAAAACCCCCAAATCTGCTCCAGTTGTGAGT 343
|||||||||||||||||| | ||||| ||||||| ||||||||||||||| || || |||
Sbjct 328 TTCCTCGTAGACCAGTGAGA-TCAGTAGCTAAAAACCCCAAATCTGCTCCGGTAGTTAGT 386
Query 344 AAACCCTTAATTAGAAAGAAACCAAGCTCTCTTGAGGAGGTTAAGCT-AAAGTCCACTCT 402
||||||||||||||||||||||||||||||||||||||||||||| | ||| || |||||
Sbjct 387 AAACCCTTAATTAGAAAGAAACCAAGCTCTCTTGAGGAGGTTAAGTTGAAA-TCTACTCT 445
Query 403 TACTGAGAAACCCAATTTGCAGAAATCTCAGAGATGTAAGACAAATCCTGTATCTGGAAA 462
|||||||||||| ||||||| ||| ||||||||||| |||||||||||||||||||||||
Sbjct 446 TACTGAGAAACCTAATTTGCTGAAGTCTCAGAGATGCAAGACAAATCCTGTATCTGGAAA 505
Query 463 GAGACCAACTTGTAAGATTACCATGAAACCGGAGAAAGTTTCGGTTTTGAAGAAACAATC 522
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 506 GAGACCAACTTGTAAGATTACCATGAAACCGGAGAAAGTTTCGGTTTTGAAGAAACAATC 565
Query 523 TTCTGTTTCTAGAAATGTTAAGCTTAGAGATCGCCAAACTACGATTAGAGTAGATGACAG 582
|||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||
Sbjct 566 TTCTGTTTCTAGAAATGTTAAGCTTAAAGATAGCCAAACTACGATTAGAGTAGATGACAG 625
Query 583 TATTGCTCAGAGTACTCCTGTGTCTAAATTAGGAACCGGATCTGATTTGATTTATAGAAG 642
||||||||||||||||||||| |||||||||| ||| |||||||||||||||||||||||
Sbjct 626 TATTGCTCAGAGTACTCCTGTTTCTAAATTAGAAACTGGATCTGATTTGATTTATAGAAG 685
Query 643 CAACAGTGAAGCTACTGATGATGGTAGACTAAGTAGCAACAGTAGTAGTTATCAAGACAG 702
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 686 GAAGAGTGAAGCTACTGATGATGGTAGACTAAGTAGCAACAGTAGTAGTTATCAAGATAG 745
Query 703 GACACCACCGGTTCAAGCTTCGGTGTCTCCAGAGATACAATGTGGATCGTCTATGAATTT 762
||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||| |
Sbjct 746 GACACCACCTGTTCAAGCTTCGGTGTCTCCAGAGATACAGTGTGGATCGTCTATGAATCT 805
Query 763 GTCTGCATCAACTCAATCACAAGCTTGTTATGCTGCTGGGCATTTACTCTCTGGTGTTAG 822
|||||||||| |||||||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct 806 GTCTGCATCAGCTCAATCACAAGCTTGTTATGCTGCTGGACATTTACTCTCAGGTGTTAG 865
Query 823 TGATAAGAGGAAGTGCAAGCCTAAGGGGATTCTCACTGTGGGTGAAAATGGTTTTGAGGT 882
|||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 866 TGATAAGAGGAAATGCAAGCCTAAGGGGATACTCACTGTGGGTGAAAATGGTTTTGAGGT 925
Query 883 TGGTAAGGGCAAGATACTGAATGATTCTGATGAATTTGATGAAGGAGATTTTGGTAATGA 942
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 926 TGGTAAAGGCAAGATACTGAATGATTCTGATGAATTTGATGAAGGAGATTTTGGTAATGA 985
Query 943 CGGAAGTTGTGATAACATATCTATCATGCCTTTGCCCGCGGATGCGTCAGTGCACTGGCT 1002
||| |||| |||| | || ||| | ||||||||||| |||||||||||||||||||||||
Sbjct 986 CGGGAGTTATGATGATATTTCTGTTATGCCTTTGCCTGCGGATGCGTCAGTGCACTGGCT 1045
Query 1003 TTTATCTCCTTGTGATGAGGAGAAAGAACATGAGAATGAAAAATCTGATGATGGTTTCTC 1062
|||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||
Sbjct 1046 TTTATCTCCTTGTGATGAGGAGAAAGAACATGAGAAGGAAATATCTGATGATGGTTTCTC 1105
Query 1063 CCAGTTGCAGCAAATTGTTGAGTGCGTTGGCCATGAGACTCCTTCGCCAGTATCAGATCG 1122
||||| ||||||||||||||||| |||||||||||||||||||||||| ||||||||||
Sbjct 1106 TCAGTTTCAGCAAATTGTTGAGTGTGTTGGCCATGAGACTCCTTCGCCACTATCAGATCG 1165
Query 1123 TAGTGCTTCTTCGGATCTATGCAACATTAGTAGCGGTAGAAGTCTTTCGCCCATGGACAT 1182
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct 1166 TAGTGCTTCTTCGGATCTATGCAACATTAGTAGTGGTAGAAGTCTTTCGCCCATGGATAT 1225
Query 1183 ATATAAAGAGACAACGAGAAGGATCAGTTCTTCGCTTTCTCCAAATGAGCTTTTTCGGTT 1242
||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||
Sbjct 1226 ATATAAAGAGACAACGAGAAGGATCAGTTCTTCTCTTTCTCCAAATGAACTTTTTCGGTT 1285
Query 1243 CAGAAGATTTATTCACCTTTCCGCCTGTGATGGTGAAGCTTCAGCATTCGACGCTTCCCC 1302
||||||||| ||||||||||| | ||||||||||||||||||||||||||| |||||||
Sbjct 1286 CAGAAGATTCATTCACCTTTCATCATGTGATGGTGAAGCTTCAGCATTCGACACTTCCCC 1345
Query 1303 TACGTGTGAGCTGGATCCTTCTGAGCATTTGAAAGGAGACAAATCGTCTCCCTTATCTGT 1362
||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1346 TACATGTGAGCTAGATCCTTCTGAGCATTTGAAAGGAGACAAATCGTCTCCCTTATCTGT 1405
Query 1363 TGATACGCTGGGAAGTGAGAATGTTATTCAAACACCTGAATCCAACTCAAGCTTCGACAA 1422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1406 TGATACGCTGGGAAGTGAGAATGTTATTCAAACACCTGAATCCAACTCAAGCTTCGACAA 1465
Query 1423 TTATTTCAGACTCTCATGTTCTCAAGCTGAAATCCAAAAGAAACATGATGTTGGTTCATA 1482
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1466 TTATTTTGGACTCTCATGTTCTCAAGCTGAAATCCAAAAGAAACATGATGTTGGTTCAGA 1525
Query 1483 TTTGGAAGCACTGACAATGAATTTTCAGTCAGCCGGTTTGTCACCAAGGATCCAGGCTTC 1542
||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1526 TTTGGAATCACTGACAATGAAGTTTCAGTCAGCCGGTTTGTCACCAAGGATCCAGGCTTC 1585
Query 1543 ATCACGGGAGCCGAGCCGTTCAAGTTTCAACTTTGACTCTTTGGCCACATCTTCTGATTC 1602
|||| |||||||||||||||||||||||||||| |||| |||||||||||||||||||||
Sbjct 1586 ATCATGGGAGCCGAGCCGTTCAAGTTTCAACTTCGACTATTTGGCCACATCTTCTGATTC 1645
Query 1603 CATTGATCTCTCACAGTTTCAGGGAGCTTTAGTGGACAGAAGTTCTCGTCATCCTTATGT 1662
||||||||||||||||||||| ||| |||||| ||||| |||||| |||||||| ||||
Sbjct 1646 TATTGATCTCTCACAGTTTCAGAGAGGTTTAGTTGACAGGAGTTCTTGTCATCCTCATGT 1705
Query 1663 AACACTGGATACAGTGTCAAGGACACATGTGAGAGTAGAGCAAACAAATAGCCACATGCC 1722
||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1706 AACACTGGATAAAGTGTCAAGGACACATTTGAGAGTAGAGCAAACAAATAGCCACATGCC 1765
Query 1723 TGAAATAAAATCCCAACAGATTACAGATACTGAATTTGATATGCAAAATCACAAAGAAAG 1782
|||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1766 TGAAATGAAATCCCAACAGATTACAGATACTGAATTTGATATTCAAAATCACAAAGAAAG 1825
Query 1783 TGCTGCTCCTCTGGGAATAGAAAGAGAATTACTTCCATTCTCTGCTGCAGAGTCAATAAG 1842
||||||| ||||||||| || ||||||||| ||||||| |||||||||||||||||||||
Sbjct 1826 TGCTGCTTCTCTGGGAAAAGGAAGAGAATTGCTTCCATGCTCTGCTGCAGAGTCAATAAG 1885
Query 1843 CACTGATGGTGGTGGTCTGATTTGTTCTGAGGATTCAAATTGGATGGCATGTTACAAGAA 1902
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1886 CACTGATGGAGGTGGTCTGATTTGTTCTGAGGATTCAAATTGGATGGCATGTTACAAGAA 1945
Query 1903 TTAACTTCCTAGAAAGAATAGTTTTAGCATCTGTCTCTTTGTAAGTAGGTCCAC 1956
|||||||||||||||||||||||||||| ||||| |||||||||||||||||||
Sbjct 1946 TTAACTTCCTAGAAAGAATAGTTTTAGCTTCTGTTTCTTTGTAAGTAGGTCCAC 1999
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 96887051850
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5