BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg483519
Length=1214
Score E
Sequences producing significant alignments: (Bits) Value
AT2G44000.1 | Symbols: | Late embryogenesis abundant (LEA) hyd... 1509 0.0
> AT2G44000.1 | Symbols: | Late embryogenesis abundant (LEA) hydroxyproline-rich
glycoprotein family | chr2:18214324-18215571
FORWARD LENGTH=1248
Length=1248
Score = 1509 bits (817), Expect = 0.0
Identities = 1122/1257 (89%), Gaps = 69/1257 (5%)
Strand=Plus/Plus
Query 1 TTCATGATACCTTCCCTTTGTTCCAGGTCTT-G------G--aa--a-a-aaaaGGAGAA 47
||||||||||||| ||||||||||||||||| | | || | | ||||||||||
Sbjct 18 TTCATGATACCTTTCCTTTGTTCCAGGTCTTGGAAAAAAGCAAAGTATACAAAAGGAGAA 77
Query 48 ACAAAGCTAAAAAGGGTTCTTCTAAGCATCTCTTACTTATTTCGGAAACCACACATCATC 107
||||||||||||||||||||| |||||||||||||||||||||| ||| ||| |||||||
Sbjct 78 ACAAAGCTAAAAAGGGTTCTTTTAAGCATCTCTTACTTATTTCGTAAAACACTCATCATC 137
Query 108 TTTTAATGTAATGTTGATCAAGAACCCATTCATACTTTCAACTTTCCACATATTCTCAGC 167
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 138 TTTTAATGTAATGTTGATCAAGAACCCATTCATACTTTCTACTTTCCACATATTCTCAG- 196
Query 168 CTTTTTCTGTTGGGATTTGGCTTTGCTGACTATATATCTTTTTGTTATCATCTAAGTTCC 227
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 197 CTTTTTCTGTTGGGATTTGGCTTTGCTGAGTATATATCTTTTTGTTATCATCTAAGTTCC 256
Query 228 TCTTGACAATACTGAAATTGTTATCGGTCATAACAATCTCTG-GGGAAAAATGTCAGTTT 286
||||||||||||||||| ||||||||||| ||||||||||| ||| ||||||| ||||
Sbjct 257 TCTTGACAATACTGAAA-AGTTATCGGTCA-AACAATCTCTGAGGG-GAAATGTCTGTTT 313
Query 287 ATGTTGAAACAACATATGGAAGAACGAGCAAAGATGTTGATGAAGCTCACAGAATTTACC 346
||| ||||||| |||||||||||| ||||||||||||||||||||||| |||||||||||
Sbjct 314 ATGCTGAAACAGCATATGGAAGAAGGAGCAAAGATGTTGATGAAGCTCGCAGAATTTACC 373
Query 347 AACCGAAACAGAGTGATATCACCGGCAAAATGATCATCTTCATCCTTGCAGGGCTTTGCA 406
|||||||||||||||| |||||||||||||| |||||||| |||||||||||||||||||
Sbjct 374 AACCGAAACAGAGTGACATCACCGGCAAAATCATCATCTTTATCCTTGCAGGGCTTTGCA 433
Query 407 TGCTGCTCTTCATCTTCATCGTCATCGGTTTCTTTTTCATAGCCAAGCCACTCAAAGCAA 466
|||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||
Sbjct 434 TGCTGCTCTTCATCTTCATCGTCATCGGTTTCTTTTTCATAGCCAAGCCACTGACAGCAA 493
Query 467 GCTTGACATCTGTTGCTA-TAAGAAACCTCAGGTACAAAAACGATACATCATCATCATCA 525
||||||||||||||| | ||||||||||||||||||| ||| |||||||||||||||||
Sbjct 494 GCTTGACATCTGTTG-AAGTAAGAAACCTCAGGTACAACAACAATACATCATCATCATCA 552
Query 526 TCGCTTTACTTTAACGCAACACTGGCTATGGAAATCAGAATTGAGAATCCGAATCTCGGG 585
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 553 TCGCTTTACTTTAACGCAACACTGGCTATGGAAATCAGAATTGAGAATCCGAATCTCGGG 612
Query 586 TTCTTTGAGTTTCCCACTAGTAAAGGAGATATCTTGTACAACGGTCATGTTGTTGGTGAA 645
||||| |||||||||||||||| |||||| ||||||||||||||| ||||||||||||||
Sbjct 613 TTCTTCGAGTTTCCCACTAGTAGAGGAGAAATCTTGTACAACGGTGATGTTGTTGGTGAA 672
Query 646 ATGAGGATTAATGGACAACGAGTGGCTTCATATGGTGCCATGAGAACAGAAGTTAG-GAC 704
||||||||||||||||||||||||||||||| ||||| | | |||||||| ||||| | |
Sbjct 673 ATGAGGATTAATGGACAACGAGTGGCTTCATTTGGTGACTTAAGAACAGAGGTTAGTG-C 731
Query 705 ACAAGTGGGTTACAGAGGGAATCAGACATCACCTGTTTGGTTGAAGAATGATATAGAGAG 764
| |||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 732 AGAAGTGGCTTACAGAGGGAATCAGAAATCACCTGTTTGGTTGAAGAATGATATAGAGAG 791
Query 765 AAGGTTAATAATCCTCGAGGCCAGAGCTAAACTGAGAGGTGAAGTACACTTGAAGGCCTT 824
|||| |||||||||||||| ||||||||||||| ||||||||||| |||||||||| |||
Sbjct 792 AAGGCTAATAATCCTCGAGACCAGAGCTAAACTAAGAGGTGAAGTGCACTTGAAGGACTT 851
Query 825 GAACAAGAGAACAGTGAATTTGAAGTGTTTAATGCATCTTAATCTAA-TAGATGAAGTTA 883
|||||||||||||||||||||||||||||||||||| |||||||| | | ||||| ||||
Sbjct 852 GAACAAGAGAACAGTGAATTTGAAGTGTTTAATGCAACTTAATCTCAGT-GATGATGTTA 910
Query 884 TTCATCGTTTCTGGTGTAAATGAAACACTCtt---tt-ttt-at--tttt-tAGC-TA-T 933
|||||||||| ||||||||||||||||| ||| || ||| || |||| | | || |
Sbjct 911 TTCATCGTTTGTGGTGTAAATGAAACACACTTAGGTTGTTTCATACTTTTCTTGGGTAAT 970
Query 934 ACAGTATT--------AG-TATA----CAT-TT-ATAAGTGAATATTGAAATACTTAGGT 978
||| || || |||| ||| || |||||||||||| ||||||||||||
Sbjct 971 T-AGTTTTTCTTCTTTAGCTATATTAGCATATTTATAAGTGAATATCAAAATACTTAGGT 1029
Query 979 TTCTTTTAACATAAAAATTGATATCAAAATATCATGCTTTATGCTTATACCAAAATAAAT 1038
||||||| || |||||||||||| ||||||||| | ||||| | |||||||||||
Sbjct 1030 TTCTTTTTTCACAAAAATTGATATTAAAATATCA-G-TTTAT----A--CCAAAATAAAT 1081
Query 1039 CTCGAGTTTTACAGTAAAGTTA-AATATATAAGAAATTGAGTGtttttttttCTTTAATT 1097
||| |||||||||||| | | | || || |||| | | ||||||||| ||||| |
Sbjct 1082 CTCAAGTTTTACAGTATA-TCAGAA-ATTTAAG---T-G--TGTTTTTTT--CTTTAGGT 1131
Query 1098 CTTATCTTGCTCTTTTTGTCACTTTCTTTAACTCTTATCATCAGATAAAAGTGTCGCTTT 1157
|||||||| || |||||||||||||||||| |||| ||||||||||||| |||||||||
Sbjct 1132 CTTATCTTTCTAGTTTTGTCACTTTCTTTAATTCTTGTCATCAGATAAAAATGTCGCTTT 1191
Query 1158 TGAATAATTCAATATGGTTAGTGTTTGTTAGCGTAAGAAACATCATCAGCTTTGTCG 1214
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1192 TGAATAATTCAATATGGTTAGTGTTTGTTAGCGTAAGAAACATCATCAGCTTTGTCG 1248
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59638247460
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5