BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg483520
Length=707
Score E
Sequences producing significant alignments: (Bits) Value
AT2G44010.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 974 0.0
> AT2G44010.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT3G59880.1);
Has 18 Blast hits to 18 proteins in 7 species: Archae - 0;
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 18; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr2:18216684-18217438
FORWARD LENGTH=755
Length=755
Score = 974 bits (527), Expect = 0.0
Identities = 654/709 (92%), Gaps = 33/709 (5%)
Strand=Plus/Plus
Query 28 tataaagaaagataaatataaaagaagaatattggaagGTAACTAAGCaccaaacccaaa 87
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 51 TATAAAGAAAGACAAATATAAAAGAAGAATATTGGAAGGTAACTAAGCACCAAACCCAAA 110
Query 88 gtcaataacca-t-----aaa----------ca---c-aa-aaccacaaagagagaaata 126
||||||||||| | ||| || | || |||||||||||| ||||||
Sbjct 111 GTCAATAACCATTAACAAAAACCTTTTGCTTCATCTCAAAGAACCACAAAGAGCGAAATA 170
Query 127 agaaaacaaaaataGAGTGAATCATAAATGGATGGTTTAATACCGATGGCCCTTAAGGCC 186
|||||||||||| ||||| ||||| |||||||||||||||||| |||||||||||||||
Sbjct 171 AGAAAACAAAAAGAGAGT--ATCATCAATGGATGGTTTAATACCAATGGCCCTTAAGGCC 228
Query 187 GTGAAGAAGAATCTAACTCGTCGTCGTTACGAACGTCTCTCCTCCTCCGCCACAACTCGT 246
||||||||||| ||||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct 229 GTGAAGAAGAACCTAACTCGTCGTCGTTACGAACGTCTCTCCTATTCCGCAACAACTCGT 288
Query 247 GAGTCTTACGACTTTGTTTCCGATATTGAAATGAACGTCGACGGTCGTCACCATCGCCGT 306
|||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct 289 GAGTCTTACGACTTCGCTTCCGATATTGAAATGAACGTCGACGGTCGTCACCATCGCCGT 348
Query 307 GGCTGGTCCGTTGGAGACTTCCCATCGTTATCAAGCCGGGAAACAAAAAGAAACGGTGGT 366
||||||||||||||||| ||| |||||||||||||||||||||| |||||||||||||||
Sbjct 349 GGCTGGTCCGTTGGAGATTTCTCATCGTTATCAAGCCGGGAAACCAAAAGAAACGGTGGT 408
Query 367 GTAGCTCCGGAGAAGGGAT-TTACTCCGCCGCGGGAGGGTCAACTTGTACGATTCAAGAG 425
||||||||||||||| | | ||||||||||||||||||||||||||||| ||||||||||
Sbjct 409 GTAGCTCCGGAGAAGAG-TCTTACTCCGCCGCGGGAGGGTCAACTTGTAAGATTCAAGAG 467
Query 426 CCATAGATTGTTTTCTTGCATCTCAGGTCAATAATTTTATCAATTCAAGAAAATTCTCAA 485
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
Sbjct 468 CCATAGATTGTTTTCTTGCATCTCAGGTCAATAATTTTATCATTTCAAGAAAATTCTC-A 526
Query 486 AATACAGaaaaaaacaaaaaTAAA-----TAGGAAATTTGCA-TTTTCTTTCGTGTTGTG 539
|||||||||||||| ||||| ||| ||||||||||||| |||| ||||||||||||
Sbjct 527 AATACAGAAAAAAAAAAAAAAAAATTTTTTAGGAAATTTGCATTTTTATTTCGTGTTGTG 586
Query 540 TTTGATTTTATGTACAAAGAATCATGTAGATATCGTTATTTTGTGATCTTTTGATGTATA 599
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 587 TTTGATTTTATGTACAACGAATCATGTAGATATCGTTATTTTGTGATCTTTTGATGTATA 646
Query 600 CGTAAAGTTTGTAGTTGGGGTTTGTTGTTAAAATGTATATTTGTAAGGTCATAAACGAGA 659
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 647 CGTAAAGTTTGTAGTTGGGGTTTGTTGTTAAAATGTATATTTGTAAGGTCATAAACGAGA 706
Query 660 AA-TGAAAAGTTGTATGGACCAAACTAGAAATAATGTTAATAACTCTCC 707
|| |||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 707 AAATGAAAACTTGTATGGACCAAACTAGAAATAATGTTAATAACTCTCC 755
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34259688254
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5