BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg483522
Length=1367
Score E
Sequences producing significant alignments: (Bits) Value
AT2G44040.1 | Symbols: | Dihydrodipicolinate reductase, bacter... 2211 0.0
AT3G59890.1 | Symbols: | Dihydrodipicolinate reductase, bacter... 1029 0.0
> AT2G44040.1 | Symbols: | Dihydrodipicolinate reductase, bacterial/plant
| chr2:18221769-18224104 REVERSE LENGTH=1366
Length=1366
Score = 2211 bits (1197), Expect = 0.0
Identities = 1315/1371 (96%), Gaps = 12/1371 (1%)
Strand=Plus/Plus
Query 1 CTCTCACCGGCCGGGAAA-TTTCAGACAAAAGTGAAAGATTTGAACTTTTG--TCCGTAG 57
|||||||||||| ||||| ||||||||||||||||||||||| |||||||| |||||
Sbjct 4 CTCTCACCGGCC-GGAAATTTTCAGACAAAAGTGAAAGATTTAAACTTTTGACTCCGT-- 60
Query 58 ACGTAACAAAGAACAAAACTTTCGTCTCCTGGGAGAAG-AAATTCCTTAATGGCTACGAA 116
|||||||||||||||||||| ||| |||| |||| || ||||||||| |||||||||||
Sbjct 61 -CGTAACAAAGAACAAAACTTCCGTATCCT-GGAG-AGTAAATTCCTTTATGGCTACGAA 117
Query 117 TGGGTTAATGGCGTCTTCCAGTGTGTTTCTTCATCGCCCGCGAATTGCATTTGCTTCTAG 176
||||||||||||||| |||||||||||||||||||||||||| || ||||||||||||||
Sbjct 118 TGGGTTAATGGCGTCGTCCAGTGTGTTTCTTCATCGCCCGCGTATCGCATTTGCTTCTAG 177
Query 177 AACGAATCAGACTGCAGGAAAATACGGTAAAGGCCGTGTTAGTTTCATGGGCATTGGGAC 236
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 178 AACGAATCAGACTGTAGGAAAATACGGTAAAGGCCGTGTTAGTTTCATGGGCATTGGGAC 237
Query 237 ACGTCGTCTTCCGGTGATTTTATCAATGACAGCGACGGCGGAGTCCGGTGAGGAGGCTGT 296
|||||||||||||||| ||||||| ||||| |||| |||||| |||||||||||||| ||
Sbjct 238 ACGTCGTCTTCCGGTGGTTTTATCCATGACGGCGATGGCGGATTCCGGTGAGGAGGCCGT 297
Query 297 GAAATCTGTTTTGCCTGGAAATGGCATATCCATCATGGTGAATGGATGTAGTGGCAAAAT 356
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 298 GAAATCTGTTTTGCCTGGAAATGGCATATCCATCATGGTGAATGGATGTAGTGGCAAAAT 357
Query 357 GGGGAAAGCTGTAATCAAAGCAGCAGACTCTGCAGGAGTAAATATTGTTCCCATATCATT 416
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 358 GGGGAAAGCTGTAATTAAAGCAGCAGACTCTGCAGGAGTAAATATTGTTCCCATATCGTT 417
Query 417 TGGATCTGCTGGTGAGGATGGTCAGAGAGTTGAGGTCTGTGGAAAGGAGATTACTGTGCA 476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 418 TGGATCTGCTGGTGAGGATGGTCAGAGAGTTGAGGTCTGTGGAAAGGAGATTACTGTGCA 477
Query 477 CGGTCCTACTGAAAGAGAAAAGGTTCTTTCTTCGGTGTTTGAGAAGCACCCGGAGCTAAT 536
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 478 CGGTCCAACTGAAAGAGAAAAGGTTCTTTCTTCGGTGTTTGAGAAGCACCCGGAGCTAAT 537
Query 537 TGTTGTGGACTACACAATTCCTTCTGCAGTAAATGATAATGCGGAGCTGTATAGCAAAGT 596
|||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 538 TGTTGTCGACTACACAATTCCCTCTGCAGTAAATGATAATGCGGAGCTGTATAGCAAAGT 597
Query 597 AGGTGTTCCTTTCGTCATGGGAACAACTGGTGGAGATAGGAACAAATTGTATGAAACTGT 656
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 598 AGGTGTTCCTTTCGTCATGGGAACAACTGGTGGAGATAGGAACAAATTGTATGAAACTGT 657
Query 657 TGAGGAAGCAAAGATTTATGCTGTGATTTCCCCACAGATGGGTAAACAGGTTGTAGCATT 716
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 658 TGAGGAAGCAAAGATTTATGCTGTGATTTCTCCACAGATGGGTAAACAGGTTGTAGCATT 717
Query 717 TCTTGCGGCCATGGAGATCATGGCTGAGCAGTTTCCGGGAGCCTTTTCTGGTTATTCATT 776
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 718 TCTTGCGGCCATGGAGATCATGGCTGAGCAGTTTCCGGGAGCCTTTTCTGGTTATTCCTT 777
Query 777 GGATGTGATGGAGTCTCATCAAGCTAGCAAATTGGATGCATCCGGAACAGCAAAAGCTGT 836
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 778 GGATGTGATGGAGTCTCATCAAGCTAGCAAATTGGATGCATCCGGAACAGCAAAAGCTGT 837
Query 837 TATTTCTTGCTTCCAGGAATTGGGTGTGTCTTACGACATGGATCAGATACAATTGATTCG 896
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 838 TATTTCTTGCTTCCAGGAATTGGGTGTGTCTTACGACATGGATCAGATACAATTGATTCG 897
Query 897 GGATCCAAAACAGCAAGTGGAGATGGTGGGTGTTCCCGAAGAGCATATCTCTGGCCATGC 956
||||||||||||||||||||||||||||||||| || || |||||||||||||| || ||
Sbjct 898 GGATCCAAAACAGCAAGTGGAGATGGTGGGTGTACCTGAGGAGCATATCTCTGGTCACGC 957
Query 957 TTTCCATCTTTATCACTTGACATCACCCGATGAAACTGTCTCCTTCGAGTTCCAGCATAA 1016
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 958 TTTCCATCTTTATCACTTGACATCACCCGATGAAACTGTCTCCTTCGAGTTCCAGCACAA 1017
Query 1017 TGTCTGCGGCAGATCAATATACGCCGAGGGTACTGTTGATGCCGTGCTCTTCCTCGCCAA 1076
|||||||||| ||||||| || || |||||||||||||||||||||||||||||||||||
Sbjct 1018 TGTCTGCGGCCGATCAATTTATGCTGAGGGTACTGTTGATGCCGTGCTCTTCCTCGCCAA 1077
Query 1077 AAAGATTCGATTGAAAGCAGATCAGCGAATCTACAACATGATCGATGTTTTGAGAGAGGG 1136
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1078 AAAGATTCGATTGAAAGCAGATCAGCGAATCTACAACATGATCGATGTCTTGAGAGAGGG 1137
Query 1137 AAACATGCGTTAAGCTTCCGAGTTTTGTCAGTGCATTGACCAAATGGTGGTTCTAGAAAA 1196
||| ||||||| ||||| ||||||||| |||||||||||||||||||||||| ||||| |
Sbjct 1138 AAATATGCGTTGAGCTTTCGAGTTTTGCCAGTGCATTGACCAAATGGTGGTTGTAGAAGA 1197
Query 1197 AGCTGAGATTAGATTTACCAAATCATCAGCTGTGAAGATTAGATGTTTGGTTTCCCACTT 1256
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1198 -GCTGAGATTAGATTTACCAAATCATCAGCTGTGAAAATTAGATGTTTGGTTTCCCACTT 1256
Query 1257 CTTCTGCCTTTAGCACAGGCTTTTAAAACTCCTTGGTATATACAGGAACTTGCCATTGTA 1316
|||||||||| ||||||||||||| ||| ||||||||||||||| |||||||||||||||
Sbjct 1257 CTTCTGCCTTGAGCACAGGCTTTTGAAATTCCTTGGTATATACAAGAACTTGCCATTGTA 1316
Query 1317 TTGTTCATGTTTTGACCTCTTTACCTTAAATGTTATTCTCCTTTCTGGATC 1367
|||||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct 1317 TTGTTCATGTTTTGACCTCTTTACCTCAA-TGTTATTCTCCTTTCTGGATC 1366
> AT3G59890.1 | Symbols: | Dihydrodipicolinate reductase, bacterial/plant
| chr3:22124242-22126630 REVERSE LENGTH=1444
Length=1444
Score = 1029 bits (557), Expect = 0.0
Identities = 823/951 (87%), Gaps = 19/951 (2%)
Strand=Plus/Plus
Query 205 AAAGGCCGTGTTAGTTTCATGGGCATTGGGACACGTC-GTCTTCCGGTGATTTTATCAAT 263
|||||||||||||||||||| |||| || || ||| | || |||||||| | || |||||
Sbjct 248 AAAGGCCGTGTTAGTTTCATCGGCAATGTGAAACG-CTGTTTTCCGGTGGTATTGTCAAT 306
Query 264 GACAGCG-ACGGCGGAGTCCGGT-GAGGAGGCTGTGAAA-TCTGTTTTGCCTGGAAATGG 320
| | | | | ||||| | | ||||| |||| |||| || ||| |||||| || ||
Sbjct 307 G---G-GAAAGTCGGAG-ACTTTCGAGGAAGCTG-GAAATTCCGTTGCGCCTGGTAACGG 360
Query 321 CATATCCATCATGGTGAATGGATGTAGTGGCAAAATGGGGAAAGCTGTAATCAAAGCAGC 380
|||||| ||||||||||||||||| ||||| ||||||||||||||||| |||||||| ||
Sbjct 361 CATATCGATCATGGTGAATGGATGCAGTGGTAAAATGGGGAAAGCTGTCATCAAAGCGGC 420
Query 381 AGACTCTGCAGGAGTAAATATTGTTCCCATATCATTTGGATCTGCTGGTGAGGATGGTCA 440
||| ||||| ||||| ||||||||||| | ||||||||| |||| || |||| ||| ||
Sbjct 421 AGATTCTGCTGGAGTGAATATTGTTCCTACATCATTTGGGTCTGTTGAAGAGGCTGGCCA 480
Query 441 GAGAGTTGAGGTCTGTGGAAAGGAGATTAC-TGTGCACGGTCCTACTGAAAGAGAAAAGG 499
|| |||||||||||||||||||||||| | |||||| ||||||||||||||||||||||
Sbjct 481 GACTGTTGAGGTCTGTGGAAAGGAGATT-CTTGTGCATGGTCCTACTGAAAGAGAAAAGG 539
Query 500 TTCTTTCTTCGGTGTTTGAGAAGCACCCGGAGCTAATTGTTGTGGACTACACAATTCCTT 559
| || ||||| |||||||||||| | || || |||||||||||||||||||||||||| |
Sbjct 540 TGCTGTCTTCAGTGTTTGAGAAGTATCCTGAACTAATTGTTGTGGACTACACAATTCCCT 599
Query 560 CTGCAGTAAATGATAATGCGGAGCTGTATAGCAAAGTAGGTGTTCCTTTCGTCATGGGAA 619
||||||||||||||||||| ||||||||| |||||||||| ||||| ||||| |||||||
Sbjct 600 CTGCAGTAAATGATAATGCAGAGCTGTATGGCAAAGTAGGAGTTCCGTTCGTAATGGGAA 659
Query 620 CAACTGGTGGAGATAGGAACAA-ATTGTATGAAACTGTTGAGGAAGCAAAGATTTATGCT 678
||||||| ||||| ||| |||| ||||||| ||||||| |||||| ||||||||||||||
Sbjct 660 CAACTGGAGGAGACAGG-ACAAGATTGTATAAAACTGTCGAGGAATCAAAGATTTATGCT 718
Query 679 GTGATTTCCCCACAGATGGGTAAACAGGTTGTAGCATTTCTTGCGGCCATGGAGATCATG 738
|||||||| ||||||||||||||||||||||| || |||||||| || ||||||||||||
Sbjct 719 GTGATTTCTCCACAGATGGGTAAACAGGTTGTTGCGTTTCTTGCAGCAATGGAGATCATG 778
Query 739 GCTGAGCAGTTTCCGGGAGCCTTTTCTGGTTATTCATTGGATGTGATGGAGTCTCATCAA 798
||||||||||||| || || ||| |||||||||| || || ||||||||||||||||||
Sbjct 779 TCTGAGCAGTTTCCTGGTGCATTTGCTGGTTATTCCTTAGAGGTGATGGAGTCTCATCAA 838
Query 799 GCTAGCAAATTGGATGCATCCGGAACAGCAAAAGCTGTTATTTCTTGCTTCCAGGAATTG 858
|||||||||||||||||||| || || ||||||||||||||||||||||| ||| ||||
Sbjct 839 GCTAGCAAATTGGATGCATCTGGTACTGCAAAAGCTGTTATTTCTTGCTTTCAGAAATTA 898
Query 859 GGTGTGTCTTACGACATGGATCAGATACAATTGATTCGGGATCCAAAACAGCA-AGTGGA 917
|| ||||||||||||||||| ||||||||||| ||||| ||||| || ||||| | || |
Sbjct 899 GGCGTGTCTTACGACATGGACCAGATACAATTAATTCGAGATCCTAAGCAGCAGATTG-A 957
Query 918 GATGGTGGGTGTTCCCGAAGAGCATATCTCTGGCCATGCTTTCCATCTTTATCACTTGAC 977
| ||||||||||||| || |||||| |||| || ||||||||||||||||||||||||||
Sbjct 958 GGTGGTGGGTGTTCCAGAGGAGCATGTCTCGGGTCATGCTTTCCATCTTTATCACTTGAC 1017
Query 978 ATCACCCGATGAAACTGTCTCCTTCGAGTTCCAGCATAATGTCTGCGGCAGATCAATATA 1037
|||||| ||| ||||||| ||||| ||||||||||| ||||| ||||| |||||||||||
Sbjct 1018 ATCACCAGATAAAACTGTGTCCTTTGAGTTCCAGCACAATGTTTGCGGAAGATCAATATA 1077
Query 1038 CGCCGAGGGTACTGTTGATGCCGTGCTCTTCCTCGCCAAAAAGATTCGAT-TGAAAGCAG 1096
|| ||||||||||||||||| ||||| ||||| ||||||||||| || | | |||||||
Sbjct 1078 TGCTGAGGGTACTGTTGATGCAGTGCTATTCCTTGCCAAAAAGATCCGGTCT-AAAGCAG 1136
Query 1097 ATCAGCGAATCTACAACATGATCGATGTTTTGAGAGAGGGAAACATGCGTT 1147
| || | ||||| |||||||| ||||| ||||||||||||||||||||||
Sbjct 1137 AGAAGAGGATCTATAACATGATTGATGTCTTGAGAGAGGGAAACATGCGTT 1187
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 67318930845
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5