BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg483524
Length=742
Score E
Sequences producing significant alignments: (Bits) Value
AT2G44065.1 | Symbols: | Ribosomal protein L2 family | chr2:18... 1210 0.0
> AT2G44065.1 | Symbols: | Ribosomal protein L2 family | chr2:18228473-18230549
FORWARD LENGTH=974
Length=974
Score = 1210 bits (655), Expect = 0.0
Identities = 717/746 (96%), Gaps = 7/746 (1%)
Strand=Plus/Plus
Query 1 CCATGTCAGCTCTTGTGGCGTTATGCAGAGCTCGAGCTACTGCTTCGTTTTCTTTATTCA 60
||||||||| |||||||||||||||||||||||||||| ||||||||| |||||||||||
Sbjct 147 CCATGTCAGGTCTTGTGGCGTTATGCAGAGCTCGAGCTTCTGCTTCGTCTTCTTTATTCA 206
Query 61 ACAGCGTTATTCGTCCTGCATTTCGCAATTTCTCTACAGGTTTTGCTGATGCACAGAACA 120
|||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||
Sbjct 207 ACAGCGTTATTCGTCCAGCATTTCGCAATTTCTCTACAGGTTTTGCTGATACACAGAACA 266
Query 121 AATCATTGGTGGCGCAAATGAAAGAAGAGATGCTCCACATGGACATCAACTCAATGGTAG 180
|||||||||| || |||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 267 AATCATTGGTAGCACAAATGAAAGAAGAGATGCTCCACATGGACATCAACTCAATGATAG 326
Query 181 GAAGTTCCATGCCACTAGGTATGATGCGTATCGGAACAATCATCCACAACATCGAGATGA 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 327 GAAGTTCCATGCCACTAGGTATGATGCGTATCGGAACAATCATCCACAACATCGAGATGA 386
Query 241 ACCCAGGGCAAGGCGCGAAGATGGTCCGAGCTGCAGGAACCAACGCCAAGATCTTAAAGG 300
|||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||
Sbjct 387 ACCCAGGGCAAGGCGCAAAGATGGTCCGAGCTGCAGGAACCAACGCCAAGATCCTAAAGG 446
Query 301 AGCCTGCTTCAGGGAAATGCTTGATAAAGCTTCCGTCAGGGAACACCAAGTGGATCAACG 360
|||||||| ||||||||||||||||||||||||||||||| |||||||||||||||| |
Sbjct 447 AGCCTGCTAAAGGGAAATGCTTGATAAAGCTTCCGTCAGGGGACACCAAGTGGATCAATG 506
Query 361 CCAAATGTCGTGCTACGATTGGCACAGTGTCGAACCCGTCTCATGGAACGAAGAAGCTAT 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 507 CCAAATGTCGTGCTACGATTGGCACAGTGTCGAACCCGTCTCATGGAACGAAGAAGCTAT 566
Query 421 ATAAAGCAGGACAGAGTAGGTGGTTAGGGATAAGGCCCAAAGTTAGAGGAGTGGCGATGA 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 567 ATAAAGCAGGACAGAGTAGGTGGTTAGGGATAAGGCCCAAAGTTAGAGGAGTGGCGATGA 626
Query 481 ATCCGTGTGATCATCCACACGGTGGAGGTGAAGGAAAAAGCAAAAGTAGTGGAAGCAGAG 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 627 ATCCGTGTGATCATCCACACGGTGGAGGTGAAGGAAAAAGCAAAAGTAGTGGAAGCAGAG 686
Query 541 GAAGGACATCGGTTAGTCCGTGGGGGAAACCGTGTAAAGGCGGTTACAAATCAGCTAGTG 600
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 687 GAAGGACATCGGTTAGTCCGTGGGGAAAACCGTGTAAAGGCGGTTACAAATCAGCTAGTG 746
Query 601 TCAAGAAGAAGAAGAAGCGTTTGGCAGAAGCAGCAGCCAAAATGTGATATGGGTGAACAA 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 747 TCAAGAAGAAGAAGAAGCGTTTGGCAGAAGCAGCAGCCAAAATGTGATATGGGTGAACAA 806
Query 661 GTTACCATTTTCTTCTTCAAATGCTTCTTTCTTTAAAAAAGCCTC-AAGGTT-TT-G-TG 716
||| | ||||||||| ||| | |||||||||| |||||||||| || ||| || | |
Sbjct 807 GTTTCGATTTTCTTC---AAACGTTTCTTTCTTTTAAAAAGCCTCCAATGTTATTTGGTT 863
Query 717 ACGTTATTGAATCTGTTTTTTGAGAG 742
||||||||||||||||||||||||||
Sbjct 864 ACGTTATTGAATCTGTTTTTTGAGAG 889
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36017883399
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5