BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg483526
Length=1035
Score E
Sequences producing significant alignments: (Bits) Value
AT5G38640.1 | Symbols: | NagB/RpiA/CoA transferase-like superf... 1504 0.0
AT2G44070.1 | Symbols: | NagB/RpiA/CoA transferase-like superf... 1458 0.0
> AT5G38640.1 | Symbols: | NagB/RpiA/CoA transferase-like superfamily
protein | chr5:15467679-15470724 REVERSE LENGTH=2320
Length=2320
Score = 1504 bits (814), Expect = 0.0
Identities = 935/993 (94%), Gaps = 10/993 (1%)
Strand=Plus/Plus
Query 1 CTTGACCCTATGCATCCTGCTGTGTACAAGGTTGGTCTTCAATATCTTTCTGGGGATATT 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 990 CTTGACCCTATGCATCCTGCTGTGTACAAGGTTGGTCTTCAATATCTTTCTGGGGATATC 1049
Query 61 TCTGGTGGCAATGCCAGGTGTATTGCGATGCTCCAGGCATTCCAAGAGGTTGTCAAAGAT 120
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1050 TCTGGTGGCAATGCCAGGTGTATTGCGATGCTCCAAGCATTCCAAGAGGTTGTCAAAGAT 1109
Query 121 TATTCTACACCGCCTGAGAAGACTCTTAACAGGAACATGGCTGCGAAAATAAGTAGCTAC 180
||||| ||||||||||||||| ||||||||||| ||||| ||||||||||||||||||||
Sbjct 1110 TATTCAACACCGCCTGAGAAGTCTCTTAACAGGGACATGACTGCGAAAATAAGTAGCTAC 1169
Query 181 GTCTCTTTTCTCAGAGATTGTCGTCCGCTTTCGGTTAGCATGGAAAACGCAATCCGGTTT 240
||||| || |||| ||| || |||||||||||| ||||||||| ||||||||| || |||
Sbjct 1170 GTCTCCTTCCTCATAGAATGCCGTCCGCTTTCGATTAGCATGGGAAACGCAATACGATTT 1229
Query 241 GTGAAAAACAGGATTGCAAAGCTGCCTATAACACTTTCTGAATCTGAAGCAAAAGCTGCT 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1230 GTGAAAAACAGGATTGCAAAGCTGCCTATAACACTTTCTGAATCTGAAGCAAAAGCTACT 1289
Query 301 CTTAAGTCAGATATCGCACGGTTCATCAACGAGAAAATCATAGGGGCAGATACGGTGATA 360
||| |||||||||| | ||||||||| |||||||| ||||||| ||||||||||||||||
Sbjct 1290 CTTCAGTCAGATATTGAACGGTTCATTAACGAGAAGATCATAGTGGCAGATACGGTGATA 1349
Query 361 GTCAAACATGCTGTCACTAAGATAAGAGACGGTGATGTCCTTCTGACCTACGGATCTCCC 420
|||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1350 GTCAAACATGCTGTTACTAAAATAAGAGACGGTGATGTCCTTCTGACCTACGGATCTCCC 1409
Query 421 ACTGCTGTTGAGATGGTATTATTACATGCACATGAACTCAGGAAAAAGTTTCGTGTCTTG 480
|||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||
Sbjct 1410 ACTGCTGTTGAGATGGTAATATTACATGCACATGAACTCAGGAAAAAGTTTCGAGTCTTG 1469
Query 481 GTGGTGGATTCTCGCCCAAAGCTTCAAGGGCAGCTACTGCTTCGTAGATTGATCAAACGA 540
|||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1470 GTGGTGGATTCTCGTCCAAAGCTTGAAGGGCAGCTACTGCTTCGTAGATTGATCAAACGA 1529
Query 541 GGCATTAACTGTGCATACACTCATATAAATGCCATTTCATATATCATGCACCAAGTCACC 600
|||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1530 GGCATTAACTGTACATACACTCATATAAATGCCATTTCATATATCATGCATGAAGTCACC 1589
Query 601 AAAGTGTTTTTGGGCGCCTCATCAGTTTTCTCTAACGGAACAGTTTACTCTAGGGTTGGG 660
|||||||||||||||||||| |||||||| ||||||||||||||||| || |||||||||
Sbjct 1590 AAAGTGTTTTTGGGCGCCTCGTCAGTTTTGTCTAACGGAACAGTTTATTCAAGGGTTGGG 1649
Query 661 ACTGCTTGTGTTGCAATGGTGGCAACTGCTTTCCGTGTTCCTGTGCTTGTTTGTTGCGAA 720
|||||||||||||||||||| |||| ||| |||||||||||||||||||| |||||||||
Sbjct 1650 ACTGCTTGTGTTGCAATGGTTGCAAATGCATTCCGTGTTCCTGTGCTTGTATGTTGCGAA 1709
Query 721 GCCTACAAGTTCCATGAGAGGGTACTATTGGATTATTCAATATGCTCGTCCAATGAGCTC 780
||||||||||||||||||||||| | ||||| |||||||||| | |||||||||||
Sbjct 1710 GCCTACAAGTTCCATGAGAGGGTGCAATTGG---ATTCAATATG-T--TCCAATGAGCTT 1763
Query 781 GGTGATCCAAATGCTATTTCAAAAGTTCATGGAAGAGAAGACATAAACTACTTT-GATGG 839
||||||||||||||||||||| |||||||||||||||||||||||||||| ||| |||||
Sbjct 1764 GGTGATCCAAATGCTATTTCAGAAGTTCATGGAAGAGAAGACATAAACTA-TTTAGATGG 1822
Query 840 CTTGACCAACAATGCAAACCTAAAGTTTTTGAACTTGATGTATGATGCTACACCTTCAGA 899
|||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1823 CTTGACCAACAACGCAAACCTGCAGTTTTTGAACTTGATGTATGATGCTACACCTTCAGA 1882
Query 900 TTACATTTCCATGATAATCACAGATTATGGCATGGTACCTCCCACAAGCGTGCCTGTCAT 959
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1883 TTACATTTCCATGATAATCACAGATTATGGCATGGTACCTCCCACAAGTGTGCCTGTCAT 1942
Query 960 CGTGAGAGAATGTCAGAAAGAACACAATTGCTT 992
||||||||||| ||||||||||||| ||||||
Sbjct 1943 CGTGAGAGAATATCAGAAAGAACAC--TTGCTT 1973
> AT2G44070.1 | Symbols: | NagB/RpiA/CoA transferase-like superfamily
protein | chr2:18231047-18232493 REVERSE LENGTH=1076
Length=1076
Score = 1458 bits (789), Expect = 0.0
Identities = 948/1024 (93%), Gaps = 14/1024 (1%)
Strand=Plus/Plus
Query 1 CTTGACCCTATGCATCCTGCTGTGTACAAGGTTGGTCTTCAATATCTTTCTGGGGATATT 60
||||||||||||||| ||||||||||||||||||||||||| ||||||||| ||||||||
Sbjct 16 CTTGACCCTATGCATTCTGCTGTGTACAAGGTTGGTCTTCATTATCTTTCTTGGGATATT 75
Query 61 TCTGGTGGCAATGCCAGGTGTATTGCGATGCTCCAGGCATTCCAAGAGGTTGTCAAAGAT 120
||||||||||||||||| ||||||||||||||||| ||||||||||||||||| ||||||
Sbjct 76 TCTGGTGGCAATGCCAGATGTATTGCGATGCTCCAAGCATTCCAAGAGGTTGTTAAAGAT 135
Query 121 TATTCTACACCGCCTGAGAAGACTCTTAACAGGA-ACATGGCTGCGAAAATAAGTAGCTA 179
|| || || ||||||||||| || ||||| | || ||||| |||| |||||||||||||
Sbjct 136 TACTCGACGCCGCCTGAGAATACCCTTAATA-GAGACATGACTGCTCAAATAAGTAGCTA 194
Query 180 CGTCTCTTTTCTCAGAGATTGTCGTCCGCTTTCGGTTAGCATGGAAAACGCAATCCGGTT 239
||||||||| |||| ||| || |||||||||||| ||||||||| |||||||||||| ||
Sbjct 195 CGTCTCTTTCCTCATAGAATGCCGTCCGCTTTCGATTAGCATGGGAAACGCAATCCGATT 254
Query 240 TGTGAAAAACAGGATTGCAAAGCTGCCTATAACACTTTCTGAATCTGAAGCAAAAGCTGC 299
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 255 TGTGAAAAACAGGATTGCAAAGCTGCCTATAACACTTTCTGAATCTGAAGCAAAAGCTTC 314
Query 300 TCTTAAGTCAGATATCGCACGGTTCATCAACGAGAAAATCATAGGGGCAGATACGGTGAT 359
|||| | |||||||| | ||| ||||| ||||||||||||||||| |||||||| |||||
Sbjct 315 TCTTCACTCAGATATTGAACGTTTCATTAACGAGAAAATCATAGGTGCAGATACAGTGAT 374
Query 360 AGTCAAACATGCTGTCACTAAGATAAGAGACGGTGATGTCCTTCTGACCTACGGATCTCC 419
|||| |||||||||||||||| |||||||||||||||||||||||||||||||||||| |
Sbjct 375 AGTCGAACATGCTGTCACTAAAATAAGAGACGGTGATGTCCTTCTGACCTACGGATCTTC 434
Query 420 CACTGCT-GTTGAGATGGTATTATTACATGCACATGAACTCAGGAAAAAGTTTCGTGTCT 478
||||| | |||||||| ||||| | ||||||||||||||| ||||||||||||||||||
Sbjct 435 CACTG-TCATTGAGATGATATTAGTGCATGCACATGAACTCGGGAAAAAGTTTCGTGTCT 493
Query 479 TGGTGGTGGATTCTCGCCCAAAGCTTCAAGGGCAGCTACTGCTTCGTAGATTGATCAAAC 538
| |||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||
Sbjct 494 TTGTGGTGGATTCTCGACCAAAGCTTCAAGGGAAGCTACTGCTTCGTAGATTGATCAAAC 553
Query 539 GAGGCATTAACTGTGCATACACTCATATAAATGCCATTTCATATATCATGCACCAAGTCA 598
|||||||||||||| ||||||||||||||| |||||| ||||||||||||||||||||||
Sbjct 554 GAGGCATTAACTGTACATACACTCATATAACTGCCATATCATATATCATGCACCAAGTCA 613
Query 599 CCAAAGTGTTTTTGGGCGCCTCATCAGTTTTCTCTAACGGAACAGTTTACTCTAGGGTTG 658
||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||
Sbjct 614 CCAAAGTGTTTTTGGGCGCCTCATCAGTTTTTTCTAACGGAACAGTTTACTCAAGGGTTG 673
Query 659 GGACTGCTTGTGTTGCAATGGTGGC-AACTGCTTTCCGTGTTCCTGTGCTTGTTTGTTGC 717
| ||||||||||||||||||||||| || |||||||||||||||||||||||||||||||
Sbjct 674 GCACTGCTTGTGTTGCAATGGTGGCTAA-TGCTTTCCGTGTTCCTGTGCTTGTTTGTTGC 732
Query 718 GAAGCCTACAAGTTCCATGAGAGGGTACTA-TTGGATTATTCAATATGCTCGTCCAATGA 776
|||||||| ||||||||||||| ||| | | ||||||||||||||||| | ||||||||
Sbjct 733 GAAGCCTATAAGTTCCATGAGAAGGTGC-AGTTGGATTATTCAATATG--C-TCCAATGA 788
Query 777 GCTCGGTGATCCAAATGCTATTTCAAAAGTTCATGGAAGAGAAGACATAAACTACTTTGA 836
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 789 GCTCGGTGATCCAAATGCTATTTCAAAAGTTCATGGAAGAGAAGACATAAACTACTTAAA 848
Query 837 TGGCTTGACCAACAATGCAAACCTAAAGTTTTTGAACTTGATGTATGATGCTACACCTTC 896
||||||||||||||||||||| || |||||| ||||||||||||||||||||||||||||
Sbjct 849 TGGCTTGACCAACAATGCAAAGCTGAAGTTTCTGAACTTGATGTATGATGCTACACCTTC 908
Query 897 AGATTACATTTCCATGATAATCACAGATTATGGCATGGTACCTCCCACAAGCGTGCCTGT 956
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 909 AGATTACATTTCCATGATAATCACAGATTATGGCATGGTACCTCCCACAAGTGTGCCTGT 968
Query 957 CATCGTGAGAGAATGTCAGAAAGAACACAATTGCTTTGAAAGCCCAAAAATTGTTATTTA 1016
|||||| ||||||| ||||||||||||| |||||| ||||| |||| |||||||||||
Sbjct 969 CATCGTAAGAGAATATCAGAAAGAACAC--TTGCTTC-AAAGCTCAAAGATTGTTATTTA 1025
Query 1017 GATG 1020
||||
Sbjct 1026 GATG 1029
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50736488470
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5