BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg483527
Length=780
Score E
Sequences producing significant alignments: (Bits) Value
AT2G44080.1 | Symbols: ARL | ARGOS-like | chr2:18237152-1823817... 745 0.0
> AT2G44080.1 | Symbols: ARL | ARGOS-like | chr2:18237152-18238173
FORWARD LENGTH=924
Length=924
Score = 745 bits (403), Expect = 0.0
Identities = 543/604 (90%), Gaps = 35/604 (6%)
Strand=Plus/Plus
Query 203 ATTTCATCATCAGGGTTCTTCAACCAAGCTACATTGAC---AGAAGAAG-a-aa-aaaaG 256
|||||||| |||||||||||||||||| ||||||| || |||||||| | || |||||
Sbjct 313 ATTTCATCGTCAGGGTTCTTCAACCAAACTACATTTACAGAAGAAGAAGAAGAAGAAAAG 372
Query 257 TTCGTTGCTTTTTATGCGTTTGGATAAAACAAACTCAAG--T-TTCTTCATACATCGATC 313
|||||| |||||||||||||||||| ||||||||||||| | |||||||||||||||||
Sbjct 373 TTCGTTACTTTTTATGCGTTTGGAT-AAACAAACTCAAGTTTCTTCTTCATACATCGATC 431
Query 314 TGATTTTCCAGATCGAACCTCGAGAAAATaaaaaaaaaaaaCTTTCTTTTAAATGATTCG 373
|||||||||||||| ||| || | | ||| | ||||| | ||| |||||||||||||
Sbjct 432 TGATTTTCCAGATCAAACTTC--G---A-AAAGAGAAAAAGCCTTC-TTTAAATGATTCG 484
Query 374 TGAAATCTCCAGTCTACAAAACGACATCATAAACATTCAAGAACATTGTTCTCT---CAA 430
||| |||||||||||||||||||||||||||||||||||||||||| |||||| |||
Sbjct 485 TGAGTTCTCCAGTCTACAAAACGACATCATAAACATTCAAGAACATTATTCTCTCAACAA 544
Query 431 CAACA---AC----------A--ATAACCGGAAAAACATGACTTTTCGTGGGTCAGCTCC 475
||||| || | ||||||||||||||| || ||||||||| ||||||||
Sbjct 545 CAACATGGACGTGAGAGGAGATCATAACCGGAAAAACACGAGTTTTCGTGGTTCAGCTCC 604
Query 476 AGCTCCGATTGTTGGGAAGCAAGAGTTGTTTCGGACATTGTCGTCGCAGAACAGTCCAAG 535
|||||||||| | ||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 605 AGCTCCGATTATGGGGAAGCAAGAATTGTTTCGGACATTGTCGTCGCAGAACAGTCCAAG 664
Query 536 GAGGCTAATATCAGCGAGTTACTTCAGTTTAGAATCAATGGTTTTGCTTGTTGGTCTCAC 595
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 665 GAGGCTAATATCAGCGAGTTACTTCAGTTTAGAATCAATGGTTGTGCTTGTTGGTCTCAC 724
Query 596 AGCATCTCTCTTGATCTTACCGTTGATTCTTCCGCCATTGCCTCCTCCTCCCTTTATGCT 655
||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct 725 AGCATCTCTCTTGATCTTACCGTTGATTCTTCCACCATTGCCTCCTCCTCCTTTTATGCT 784
Query 656 TCTTTTGATTCCTATTGGGATTATGGTTTTGCTTATGGTTCTTGCGTTCATGCCTTCTTC 715
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 785 GCTTTTGATTCCTATTGGGATTATGGTTTTGCTTATGGTTCTTGCTTTCATGCCTTCTTC 844
Query 716 TAATTCCAAACATGTTACTTCTTGTTCCACTTTTATGTAATAAACGTTTCTTTAATTGAA 775
|||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||
Sbjct 845 TAATTCCAAACATGTTTCTTCTTCTTCCACTTTTATGTAATAAACGTTTCTTTAATTGAA 904
Query 776 GAAA 779
||||
Sbjct 905 GAAA 908
Score = 104 bits (56), Expect = 1e-21
Identities = 60/62 (97%), Gaps = 0/62 (0%)
Strand=Plus/Plus
Query 22 GTTTTCTTACAAAAAGAAACTTTCTTCGTCTTCCTCTGTATTTAAGCTTTAACACCCAGT 81
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 57 GTTTTCTTACCAAAAGAAACTTTCTTCGTCTTCCTCTGTATTTAAGCTTTAACACCCTGT 116
Query 82 TT 83
||
Sbjct 117 TT 118
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37926780985
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5