BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg483534
Length=977
Score E
Sequences producing significant alignments: (Bits) Value
AT2G44120.2 | Symbols: | Ribosomal protein L30/L7 family prote... 1229 0.0
AT2G01250.1 | Symbols: | Ribosomal protein L30/L7 family prote... 606 1e-172
AT3G13580.3 | Symbols: | Ribosomal protein L30/L7 family prote... 527 8e-149
> AT2G44120.2 | Symbols: | Ribosomal protein L30/L7 family protein
| chr2:18249042-18250708 REVERSE LENGTH=1220
Length=1220
Score = 1229 bits (665), Expect = 0.0
Identities = 789/848 (93%), Gaps = 12/848 (1%)
Strand=Plus/Plus
Query 133 GCTTTGTTTGTAGGAGAAATGGCTGAATCCAAGGTAGTGGTACCAGAGTCTGTATTAAAA 192
||| ||| ||||||||||||||||||||||||||||||||| ||||||||||| ||||
Sbjct 289 GCTATGTATGTAGGAGAAATGGCTGAATCCAAGGTAGTGGTTCCAGAGTCTGTGCTAAAG 348
Query 193 AAGATCAAGAGGCAAGAGGAATGGGCATTGGCCAAGAAAGAGGAAACTGTTGCTGCTAAG 252
||||||||||||||||||||||||||||||||||||||||| ||| |||| |||||||||
Sbjct 349 AAGATCAAGAGGCAAGAGGAATGGGCATTGGCCAAGAAAGATGAAGCTGTAGCTGCTAAG 408
Query 253 AAGAAGAGTGTTGACACCCGCAAGCTCATCTTCAAGAGAGCTGAGCAGTATGCCAAAGAA 312
|||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||
Sbjct 409 AAGAAGAGTGTTGAGGCCCGCAAGCTTATCTTCAAGAGAGCTGAGCAGTATGCCAAAGAA 468
Query 313 TACGCTGAGAAGGATAATGAGTTGATCCGATTGAAAAGGGAGGCTAAGTTGAAAGGAGGG 372
||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||
Sbjct 469 TACGCTGAGAAGGATAACGAGTTGATCCGATTGAAGCGGGAGGCTAAGTTGAAAGGAGGT 528
Query 373 TTCTATGTTGATCCAGAGGCGAAATTGCTCTTTATCATTCGTATCCGTGGTATCAATGCC 432
||||| ||||| || ||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 529 TTCTACGTTGACCCTGAGGCTAAGTTGCTCTTTATCATTCGTATCCGTGGTATCAATGCC 588
Query 433 ATTGACCCAAAAACCAAGAAAATTTTGCAGCTCCTGCGTTTGAGACAGATCTTTAATGGT 492
|||||||||||||||||||| ||| |||||||||||||||||||||||||||| ||||||
Sbjct 589 ATTGACCCAAAAACCAAGAAGATTCTGCAGCTCCTGCGTTTGAGACAGATCTTCAATGGT 648
Query 493 GTGTTTCTTAAGGTGAACAAGGCAACAGTAAACATGTTGCGCCGAGTTGAACCTTACGTG 552
|||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||
Sbjct 649 GTGTTTCTTAAGGTGAACAAGGCAACAGTAAACATGCTGCGCCGAGTTGAACCATACGTG 708
Query 553 ACTTACGGATACCCAAACTTGAAGAGTGTCAAGGAACTGATCTACAAAAGGGGTTATGGA 612
|||||||||||||||||||||||||| || |||||||||||||||||||| |||||||||
Sbjct 709 ACTTACGGATACCCAAACTTGAAGAGCGTTAAGGAACTGATCTACAAAAGAGGTTATGGA 768
Query 613 AAGCTGAACCACCAGAGGATAGCACTTACTGACAACTCGATTGTGGATCAAGCTCTAGGG 672
|||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| ||
Sbjct 769 AAGCTGAACCACCAGAGGATAGCACTTACTGACAACTCCATTGTGGATCAGGCTCTCGGA 828
Query 673 AAGCATGGTATCATCTGCGTGGAGGATCTGATCCATGAGATCATGACCGTTGGACCTCAC 732
|||||||| ||||||||||| |||||||| ||||| ||||||||||| ||||||||||||
Sbjct 829 AAGCATGGGATCATCTGCGTTGAGGATCTCATCCACGAGATCATGACTGTTGGACCTCAC 888
Query 733 TTCAAGGAAGCCAACAACTTCCTATGGCCATTCCAATTGAAGGCACCACTCGGTGGTCTT 792
||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||
Sbjct 889 TTCAAGGAAGCCAACAACTTCCTGTGGCCATTCCAATTGAAGGCACCACTCGGTGGCCTT 948
Query 793 AAGAAGAAGAGAAACCACTACGTCGAAGGTGGTGATGCTGGAAACAGGGAGAACTTCATC 852
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 949 AAGAAGAAGAGAAACCACTACGTCGAAGGTGGTGATGCTGGAAACAGGGAGAATTTCATC 1008
Query 853 AACGAGCTTGTCAGGAGAATGAATTGATGAAAGCAAGCTTCCTTCTTTATCTTTGCCCAT 912
|||||||||||||||||||||||||||||||||| |||||||||||||||||| |
Sbjct 1009 AACGAGCTTGTCAGGAGAATGAATTGATGAAAGC----TTCCTTCTTTATCTTTGC--A- 1061
Query 913 TAATTTCATAGATTTTGGGATCTGAGTGTTCTTTTT---GTTCCAGTGATCAGAGACTTG 969
||||||| ||||||||||| | |||| || ||||| |||| ||| ||||||||||||
Sbjct 1062 -AATTTCAAAGATTTTGGGACC-GAGTTTTTTTTTTTTTGTTCAAGTTATCAGAGACTTG 1119
Query 970 TGATCTTT 977
||||||||
Sbjct 1120 TGATCTTT 1127
Score = 76.8 bits (41), Expect = 4e-13
Identities = 50/54 (93%), Gaps = 2/54 (4%)
Strand=Plus/Plus
Query 1 ATTTGTTTGTTCTGATGTTTGTGAGATCAATAAACCC-GATTGTTCCAGTTCTA 53
|||||||||||||||||||||||||||| |||||||| | |||||| |||||||
Sbjct 24 ATTTGTTTGTTCTGATGTTTGTGAGATCGATAAACCCAG-TTGTTCTAGTTCTA 76
> AT2G01250.1 | Symbols: | Ribosomal protein L30/L7 family protein
| chr2:132697-134455 REVERSE LENGTH=1081
Length=1081
Score = 606 bits (328), Expect = 1e-172
Identities = 615/749 (82%), Gaps = 38/749 (5%)
Strand=Plus/Plus
Query 148 GAAATGGCTGAATCCAAGGTAGTGGTACCAGAGTCTGTATTAAAAAAGATCAAGAG-GCA 206
||||||| ||| || ||||| || || |||||||| || || || |||| ||||| | |
Sbjct 104 GAAATGGTTGAGTCAAAGGTTGTAGTTCCAGAGTCGGTGTTGAAGAAGAGGAAGAGAG-A 162
Query 207 AGAGGAATGGGCATTGGCCAAGAAAG-AGGAAACTGTT---GCTGCTAAGAAGAAGAGTG 262
||||||||||| |||| ||| ||| | | || |||| || || |||||||||| |
Sbjct 163 GGAGGAATGGGCTTTGGAGAAG-AAGCA-G-AA-TGTTGAAGCCGCCAAGAAGAAGAACG 218
Query 263 TTGACACCCGCAAGCTCATCTTCAAGAGAGCTGAGCAGTA-TGCCAAAGAATACGCTGAG 321
|| | | | ||||| |||||||| ||||| ||||| || | |||| ||||| || |||
Sbjct 219 CCGAGAACAGGAAGCTTATCTTCAAAAGAGCCGAGCAATACT-CCAAGGAATATGCCGAG 277
Query 322 AAGGATAATGAGTTGATC-CGATTGAAAAGGGAGGCTAAG-TTGAAAGGAGGGTTCTATG 379
||||| || ||||||||| || |||||| | ||||| ||| || || ||||| |||||||
Sbjct 278 AAGGAGAAGGAGTTGATCTCG-TTGAAACGCGAGGCCAAGCTT-AAGGGAGGTTTCTATG 335
Query 380 TTGATCCAGAGGCGAAATTGCTC-T-TT-ATCATTCGTATCCGTGGTATCAATGCCATTG 436
|||| || || || || |||| | || ||||| |||||||||||||||||||||||||
Sbjct 336 TTGACCCTGAAGC-TAA--GCTCTTGTTCATCATCCGTATCCGTGGTATCAATGCCATTG 392
Query 437 ACCCAAAAACCAAGAAAATTTTGCAGCTCCTGCGTTTGAGACAGATCTTT-AATGGTGTG 495
|||| || || ||||| ||| | |||||| |||||||||||||||| ||| ||||||||
Sbjct 393 ACCCTAAGACTAAGAAGATTCTCCAGCTCTTGCGTTTGAGACAGAT-TTTCAATGGTGT- 450
Query 496 TTTC-TTAAGGTGAACAAGGCAAC-AGTAAACATG-TTGCGCCGAGTTGAACCTTACGTG 552
|||| |||| || |||||||| || | | |||||| || ||||| ||||| || || ||
Sbjct 451 TTTCCTTAAAGTCAACAAGGCTACGA-TGAACATGCTT-CGCCGTGTTGAGCCCTATGTC 508
Query 553 ACTTACGGATACCCAAACTTGAAGAGTGTCAAGGAACTGATCTACAAAAGGGGTTATGGA 612
|||||||||| ||| ||||||||||||||||||||| |||||||||| || ||||| |||
Sbjct 509 ACTTACGGATTCCCTAACTTGAAGAGTGTCAAGGAATTGATCTACAAGAGAGGTTACGGA 568
Query 613 AAGCTGAACCACCAGAGGATAGCACTT-ACTGACAACTCGATTGTGGATCAAGCTCTAGG 671
||||| ||||||||||||||||| || ||||||||||| ||||| || || ||||| ||
Sbjct 569 AAGCTTAACCACCAGAGGATAGCT-TTGACTGACAACTCTATTGTAGAGCAGGCTCTTGG 627
Query 672 GAAGCATGGTATCATCTGCG-TGGAGGATCTGATCCATGAGAT-CATGACCGTTGGACCT 729
|||||||||||||| ||| || ||||| ||||||| ||||| | | || || ||||||
Sbjct 628 AAAGCATGGTATCATTTGCACTG-AGGATTTGATCCACGAGATTC-TAACAGTAGGACCT 685
Query 730 CACTTCAAGGAAGCCAACAACTTCCTATGGCCATTCCAA-TTGAAGGCACCACTCGGTGG 788
|| ||||||||||||||||||||||| ||||||||||| || ||||||||||| |||||
Sbjct 686 CATTTCAAGGAAGCCAACAACTTCCTTTGGCCATTCCAGCTT-AAGGCACCACTAGGTGG 744
Query 789 TCTTAAGAAGAAGAGAAACCACTACGTCGAAGGTGGTGATGCTGGAAACAGGGAGAACTT 848
|| |||||||||||||| |||||||| |||||||||||||| |||||| | ||||||||
Sbjct 745 CCTCAAGAAGAAGAGAAATCACTACGTGGAAGGTGGTGATGCCGGAAACCGTGAGAACTT 804
Query 849 CATCAACGAGCTTGTCAGGAGAATGAATT 877
|||||| |||||| ||||||| |||||||
Sbjct 805 CATCAATGAGCTTATCAGGAGGATGAATT 833
> AT3G13580.3 | Symbols: | Ribosomal protein L30/L7 family protein
| chr3:4433171-4435305 FORWARD LENGTH=1569
Length=1569
Score = 527 bits (285), Expect = 8e-149
Identities = 576/715 (81%), Gaps = 26/715 (4%)
Strand=Plus/Plus
Query 178 GAGTCTGTATTAAAAAAGATCAAGAGGCAAGAGGAATGGGCA-TTGGCCAAGAAAGAGGA 236
||||| || || || |||| |||||| | || ||||||||| || ||||||||| |||
Sbjct 672 GAGTCAGTGTTGAAGAAGAGAAAGAGGGAGGAAGAATGGGCACTT-GCCAAGAAACAGG- 729
Query 237 AAC-TGTTGCTGCTAAGAAGAAGAGTGTTGACACCCGCAAGCTCATCTTCAAGAGAGCTG 295
| | || ||||| || ||| ||| || ||| | | || ||||| || || | |||
Sbjct 730 AGCTTGAGGCTGCCAAAAAGCAGAATGCTGAGAAGAGGAAACTCATATTTAACCGGGCTA 789
Query 296 AGCAGTA-TGCCAAAGAATACGC-TGAGAAGGATAA-TGAGTTGATCCGA-TTGAAAAGG 351
| ||||| | |||| || ||| | ||||| || || || || |||| | |||| |
Sbjct 790 AACAGTACT-CCAAGGAGTAC-CAGGAGAAAGA-AAGGGAATTAATCC-AGCTGAAGCGT 845
Query 352 GAGGCTAAGTTGAAAGGAGGGTTCTATGTTGATCCAGAGGCGAAATTGCTCTTT-ATCAT 410
||||| || ||||||||||| || |||||||| ||||| || ||| |||| ||| || ||
Sbjct 846 GAGGCAAAATTGAAAGGAGGCTTTTATGTTGACCCAGAAGCTAAACTGCT-TTTCATTAT 904
Query 411 TCGTATCCGTGGTATCAATGCCATTGACCCAAAAACCAAGAAAATTTTGCAGCTCCTGCG 470
|||||||||||||||||||||||||||||||| || ||||| |||||||| || ||||
Sbjct 905 CCGTATCCGTGGTATCAATGCCATTGACCCAAAGACAAAGAAGATTTTGCAACTTTTGCG 964
Query 471 TTTGAGACAGATCTTT-AATGGTGTGTTTCTT-AAGGTGAACAAGGCAAC-AGTAAACAT 527
||| |||||||| ||| ||||||||||| ||| ||||| ||||||||||| | ||| |||
Sbjct 965 TTTAAGACAGAT-TTTCAATGGTGTGTT-CTTGAAGGTCAACAAGGCAACCATTAA-CAT 1021
Query 528 G-TTGCGCCGAGTTGAACCTTACGTGACTTACGGATACCCAAACTTGAAGAGTGTCAAGG 586
| || ||||| |||||||| || || || || |||||||| ||||| || ||||| ||||
Sbjct 1022 GCTT-CGCCGTGTTGAACCCTATGTAACCTATGGATACCCGAACTTAAAAAGTGTGAAGG 1080
Query 587 AACTGATCTACAAAAGGGGTTATGGAAAGCTGAACCACCAGAGGA-TAGCACTTA-CTGA 644
|| |||| |||||| | |||| ||||||||| ||||||||||||| | || |||| | ||
Sbjct 1081 AATTGATTTACAAACGAGGTTTTGGAAAGCTTAACCACCAGAGGACT-GC-CTTAACAGA 1138
Query 645 CAACTCGATTGTGGATCAAGCTCTAGGGAAGCATGGTATCATCTGCGTGGAGGATCTGAT 704
||| || ||||| ||||| | ||||| |||||||| ||||||||||| |||||||||||
Sbjct 1139 CAATTCTATTGTAGATCAGGGGCTAGGAAAGCATGGCATCATCTGCGTTGAGGATCTGAT 1198
Query 705 CCATGAGATCATGACCGTTGGACCTCACTTCAAGGAAGCCAACAACTTCCTATGGCCATT 764
||||||||||||||| ||||| || || |||||||||||||| ||||| | ||||||||
Sbjct 1199 CCATGAGATCATGACGGTTGGGCCACATTTCAAGGAAGCCAATAACTTTTTGTGGCCATT 1258
Query 765 CCAATTGAAGGCACCACTCGGTGGTCTTAAGAAGAAGAGAAACCACTACGTCGAAGGTGG 824
||| |||||||| ||| | || || | ||||||||||| ||||| ||||| ||||| ||
Sbjct 1259 CCAGTTGAAGGCTCCATTGGGAGGGATGAAGAAGAAGAGGAACCATTACGTGGAAGGAGG 1318
Query 825 TGATGCTGGAAACAGGGAGAACTTCATCAACGAGCTTGTCAGGAGAATGAATTGA 879
|||||||||||| | |||||||||||||||||||| || ||||||||||| |||
Sbjct 1319 AGATGCTGGAAACCGCGAGAACTTCATCAACGAGCTCGTTAGGAGAATGAACTGA 1373
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47822907944
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5