BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg483537
Length=1383
Score E
Sequences producing significant alignments: (Bits) Value
AT2G44140.1 | Symbols: | Peptidase family C54 protein | chr2:1... 1929 0.0
AT2G44130.1 | Symbols: | Galactose oxidase/kelch repeat superf... 1929 0.0
AT3G59940.1 | Symbols: | Galactose oxidase/kelch repeat superf... 309 5e-83
> AT2G44140.1 | Symbols: | Peptidase family C54 protein | chr2:18253497-18258035
REVERSE LENGTH=3221
Length=3221
Score = 1929 bits (1044), Expect = 0.0
Identities = 1268/1375 (92%), Gaps = 19/1375 (1%)
Strand=Plus/Minus
Query 25 ACTTTGCTCAACCAAACACGCTCTCt-tt-t-ttttt-tttAACTTGATTAAGTTCAATG 80
||||||||||| ||||||| |||||| || | ||||| | |||||| |||||||| |||
Sbjct 3044 ACTTTGCTCAATCAAACACACTCTCTGTTCTGTTTTTCTCAAACTTGTTTAAGTTCGATG 2985
Query 81 ATTATGGAAGTGTCGAAAAAGAAAGCTGGAGATTTCCAGAAATGTCACGACGATTTGATT 140
| ||||||||||||||||||||||| ||||||||| ||| |||||||||| | ||||||
Sbjct 2984 ACTATGGAAGTGTCGAAAAAGAAAGGTGGAGATTTTCAGCAATGTCACGA--A-TTGATT 2928
Query 141 CCCGGTTTACCGTCTGAATTAGCTTTGGAGTGTTTGGTCAGAGTTCCGTACCAATTTCTA 200
||||||||||| || ||| |||||||||||||||||||||||||||||| |||||| | |
Sbjct 2927 CCCGGTTTACCTTCCGAACTAGCTTTGGAGTGTTTGGTCAGAGTTCCGTTCCAATTCCAA 2868
Query 201 TCCGCCATGAAATCTGTTTGCCGTTCTTGGCGAAGCTTACTCTCTGACTCTTCTTTCATT 260
|||||||||| ||| ||||||||||||||||| ||||||||||| ||||||||||| ||
Sbjct 2867 TCCGCCATGAGATCCGTTTGCCGTTCTTGGCGTAGCTTACTCTCCGACTCTTCTTTTATC 2808
Query 261 CGAGAAAGGCACAGATGCGGTAAAACAGAGCTTCTCCTCTGTCTCGTTCAACCGCTTACG 320
| |||| ||| |||||||| |||||||||||||||||||| |||||||||||||| |||
Sbjct 2807 CAAGAACGGCGGAGATGCGGCAAAACAGAGCTTCTCCTCTGCCTCGTTCAACCGCTAACG 2748
Query 321 CCGCCAATTTCAGCTTCTAAATCGGTTGGGGAGACATTTATGGTGGACGTGAAGAAATCA 380
||||||||| |||| ||||||||||||| |||||||| ||||| |||| ||| ||||||
Sbjct 2747 CCGCCAATTCCAGCGTCTAAATCGGTTGACGAGACATTAATGGTTGACGAGAAAAAATCA 2688
Query 381 GAGGATGAGTCACAACCGCGCGTTTTCTGCACACCGCGGTTTGGATTGAGCGTTTACAAC 440
|||||||||||||| ||||||||||||||||| ||||| |||||||||||||||||||||
Sbjct 2687 GAGGATGAGTCACACCCGCGCGTTTTCTGCACGCCGCGTTTTGGATTGAGCGTTTACAAC 2628
Query 441 TCCGCGCTGTCCACGTGGCACCGCATCGCGTTTCCCGAGGAGGAGCAGATCCCGCTTTTC 500
| ||| ||||||||||||| ||| | |||||||| ||||||||||||||||||||||||
Sbjct 2627 GCTGCGATGTCCACGTGGCATCGCGTTGCGTTTCCAGAGGAGGAGCAGATCCCGCTTTTC 2568
Query 501 TGCGAGTGCGTCGTGCTTCAGGACGCCGGGAAGATTCTTCTCATCGGCGGTTGGGATCCG 560
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 2567 TGCGAGTGCGTCGTGCTTCAGGACGCCGGGAAGATTCTGCTCATCGGCGGTTGGGATCCG 2508
Query 561 GAGACGTTACAGCCGACGAGAGACGTTCACGTTCTGGAATTCGCCGGAAGGAAGTGGAGA 620
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 2507 GAGACGTTACAGCCGACGAGAGACGTTTACGTTCTGGAATTCGCCGGAAGGAAGTGGAGA 2448
Query 621 CGAGGTGCGCCGATGAAGGAATCGCGATCGTTCTTCGCTTGCGCCTCCGTCGGTTCAACT 680
||||||||||| ||||||||||| ||||| |||||||| ||||||||||| || ||||
Sbjct 2447 CGAGGTGCGCCAATGAAGGAATCACGATCATTCTTCGCCTGCGCCTCCGTAAGTCCAACG 2388
Query 681 AAGGTATACGTCGCCGGAGGTCACGACGATCAGAAAAACGCTTTACGCTCGGCGGAGGTG 740
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2387 AAGGTATACGTCGCCGGAGGTCACGACGATCAGAAAAACGCTTTACGCTCGGCGGAGGTG 2328
Query 741 TACGACGTCGAGAAAGACGAGTGGTCGACGGTTCCTCCGATGACGGAAGGAAGAGACGAA 800
||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 2327 TACGACGTCGAGAAAGACGAGTGGTCGTCGGTTACTCCGATGACGGAAGGAAGAGACGAA 2268
Query 801 TGTCAAGGATTCGCCATTGGTACGGATCTAAGGTTTTGCGTATTGAGTGGTTACGGAACG 860
||||||||||||||| |||||| || ||||||||||||||| |||| ||||||||||||
Sbjct 2267 TGTCAAGGATTCGCCGTTGGTATGGGTCTAAGGTTTTGCGTGCTGAGCGGTTACGGAACG 2208
Query 861 GAATCTCAAGGAAGATTCCGATCTGACGGAGAGATTTACGAGCCAGCTACAAATTCCTGG 920
|||||||||||||||||||||||||||||||| |||||||| ||||| ||| |||| |||
Sbjct 2207 GAATCTCAAGGAAGATTCCGATCTGACGGAGAAATTTACGATCCAGCGACAGATTCATGG 2148
Query 921 TCCAAAATCGAAAACATCTGGAGATTTCCAGATACTAGCCCGAGAGGTCGCACCGTCGGA 980
|| | |||||| ||| ||||| ||||||||||||||||||||||||||||||||| ||||
Sbjct 2147 TCGAGAATCGACAACGTCTGGCGATTTCCAGATACTAGCCCGAGAGGTCGCACCGCCGGA 2088
Query 981 GACTTTAGAAGCTCCTCTAAGTTATGGTGTTTCACAGACACTGATTTACAGAGTGAACGT 1040
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 2087 GACTTTAGAAGCTCCTCTACGTTATGGTGTTTCACAGACACTGATTTACAGAGTGAACGT 2028
Query 1041 CGATGGGAAACTAACGATGATTCGAGAAATTGGAAACTGGATCTTGAAACTGTACAGCTT 1100
||||||||||||||||||||||||||||||| ||||||||||||| || || ||||||||
Sbjct 2027 CGATGGGAAACTAACGATGATTCGAGAAATTTGAAACTGGATCTTCAATCTATACAGCTT 1968
Query 1101 CCGATGACAGGAAGCTCAGTTTTCGCCGGAAGCTTAGGAGGTGAATCGGTGGTAATGATT 1160
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1967 CCGATGACAGGAAGCTCAGTTTTCGCCGGAAGCTTAGGAGGTGAATCGGTGGTAATGATT 1908
Query 1161 GGCGGCAAAAGAGAGAGTG--G---A-GGTGAAGGAGGAGTGATGATGAAGATGACGACT 1214
||||| ||||||||||||| | | |||||||||||||||||||||||||||||||||
Sbjct 1907 GGCGGTAAAAGAGAGAGTGAAGGTGAAGGTGAAGGAGGAGTGATGATGAAGATGACGACT 1848
Query 1215 GAGAAGAAAATGGGAAAATGGAGTCAT---GTTCACATACCTTCTGATTTCTCTACTCTT 1271
||||||||||||||||||||||||||| ||||| ||||||| ||||||||||||||||
Sbjct 1847 GAGAAGAAAATGGGAAAATGGAGTCATCATGTTCATATACCTTGTGATTTCTCTACTCTT 1788
Query 1272 CCATTTTCACATGCTTCAATCTATGTTTGAAAATCC-AAA-GATTTTATGGTACAACATT 1329
|||||||| ||||||||||||||||||||||||||| ||| |||||||| ||||||||||
Sbjct 1787 CCATTTTCGCATGCTTCAATCTATGTTTGAAAATCCCAAAAGATTTTATAGTACAACATT 1728
Query 1330 GTGTT-TGATCTGATGTAATTTACACCAACACATAGAAAAAACAAAGAACTGGTT 1383
||||| |||||||||||||| |||||||||||||| |||||||||||||||||||
Sbjct 1727 GTGTTCTGATCTGATGTAATATACACCAACACATATAAAAAACAAAGAACTGGTT 1673
> AT2G44130.1 | Symbols: | Galactose oxidase/kelch repeat superfamily
protein | chr2:18253610-18255054 FORWARD LENGTH=1445
Length=1445
Score = 1929 bits (1044), Expect = 0.0
Identities = 1268/1375 (92%), Gaps = 19/1375 (1%)
Strand=Plus/Plus
Query 25 ACTTTGCTCAACCAAACACGCTCTCt-tt-t-ttttt-tttAACTTGATTAAGTTCAATG 80
||||||||||| ||||||| |||||| || | ||||| | |||||| |||||||| |||
Sbjct 65 ACTTTGCTCAATCAAACACACTCTCTGTTCTGTTTTTCTCAAACTTGTTTAAGTTCGATG 124
Query 81 ATTATGGAAGTGTCGAAAAAGAAAGCTGGAGATTTCCAGAAATGTCACGACGATTTGATT 140
| ||||||||||||||||||||||| ||||||||| ||| |||||||||| | ||||||
Sbjct 125 ACTATGGAAGTGTCGAAAAAGAAAGGTGGAGATTTTCAGCAATGTCACGA--A-TTGATT 181
Query 141 CCCGGTTTACCGTCTGAATTAGCTTTGGAGTGTTTGGTCAGAGTTCCGTACCAATTTCTA 200
||||||||||| || ||| |||||||||||||||||||||||||||||| |||||| | |
Sbjct 182 CCCGGTTTACCTTCCGAACTAGCTTTGGAGTGTTTGGTCAGAGTTCCGTTCCAATTCCAA 241
Query 201 TCCGCCATGAAATCTGTTTGCCGTTCTTGGCGAAGCTTACTCTCTGACTCTTCTTTCATT 260
|||||||||| ||| ||||||||||||||||| ||||||||||| ||||||||||| ||
Sbjct 242 TCCGCCATGAGATCCGTTTGCCGTTCTTGGCGTAGCTTACTCTCCGACTCTTCTTTTATC 301
Query 261 CGAGAAAGGCACAGATGCGGTAAAACAGAGCTTCTCCTCTGTCTCGTTCAACCGCTTACG 320
| |||| ||| |||||||| |||||||||||||||||||| |||||||||||||| |||
Sbjct 302 CAAGAACGGCGGAGATGCGGCAAAACAGAGCTTCTCCTCTGCCTCGTTCAACCGCTAACG 361
Query 321 CCGCCAATTTCAGCTTCTAAATCGGTTGGGGAGACATTTATGGTGGACGTGAAGAAATCA 380
||||||||| |||| ||||||||||||| |||||||| ||||| |||| ||| ||||||
Sbjct 362 CCGCCAATTCCAGCGTCTAAATCGGTTGACGAGACATTAATGGTTGACGAGAAAAAATCA 421
Query 381 GAGGATGAGTCACAACCGCGCGTTTTCTGCACACCGCGGTTTGGATTGAGCGTTTACAAC 440
|||||||||||||| ||||||||||||||||| ||||| |||||||||||||||||||||
Sbjct 422 GAGGATGAGTCACACCCGCGCGTTTTCTGCACGCCGCGTTTTGGATTGAGCGTTTACAAC 481
Query 441 TCCGCGCTGTCCACGTGGCACCGCATCGCGTTTCCCGAGGAGGAGCAGATCCCGCTTTTC 500
| ||| ||||||||||||| ||| | |||||||| ||||||||||||||||||||||||
Sbjct 482 GCTGCGATGTCCACGTGGCATCGCGTTGCGTTTCCAGAGGAGGAGCAGATCCCGCTTTTC 541
Query 501 TGCGAGTGCGTCGTGCTTCAGGACGCCGGGAAGATTCTTCTCATCGGCGGTTGGGATCCG 560
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 542 TGCGAGTGCGTCGTGCTTCAGGACGCCGGGAAGATTCTGCTCATCGGCGGTTGGGATCCG 601
Query 561 GAGACGTTACAGCCGACGAGAGACGTTCACGTTCTGGAATTCGCCGGAAGGAAGTGGAGA 620
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 602 GAGACGTTACAGCCGACGAGAGACGTTTACGTTCTGGAATTCGCCGGAAGGAAGTGGAGA 661
Query 621 CGAGGTGCGCCGATGAAGGAATCGCGATCGTTCTTCGCTTGCGCCTCCGTCGGTTCAACT 680
||||||||||| ||||||||||| ||||| |||||||| ||||||||||| || ||||
Sbjct 662 CGAGGTGCGCCAATGAAGGAATCACGATCATTCTTCGCCTGCGCCTCCGTAAGTCCAACG 721
Query 681 AAGGTATACGTCGCCGGAGGTCACGACGATCAGAAAAACGCTTTACGCTCGGCGGAGGTG 740
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 722 AAGGTATACGTCGCCGGAGGTCACGACGATCAGAAAAACGCTTTACGCTCGGCGGAGGTG 781
Query 741 TACGACGTCGAGAAAGACGAGTGGTCGACGGTTCCTCCGATGACGGAAGGAAGAGACGAA 800
||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 782 TACGACGTCGAGAAAGACGAGTGGTCGTCGGTTACTCCGATGACGGAAGGAAGAGACGAA 841
Query 801 TGTCAAGGATTCGCCATTGGTACGGATCTAAGGTTTTGCGTATTGAGTGGTTACGGAACG 860
||||||||||||||| |||||| || ||||||||||||||| |||| ||||||||||||
Sbjct 842 TGTCAAGGATTCGCCGTTGGTATGGGTCTAAGGTTTTGCGTGCTGAGCGGTTACGGAACG 901
Query 861 GAATCTCAAGGAAGATTCCGATCTGACGGAGAGATTTACGAGCCAGCTACAAATTCCTGG 920
|||||||||||||||||||||||||||||||| |||||||| ||||| ||| |||| |||
Sbjct 902 GAATCTCAAGGAAGATTCCGATCTGACGGAGAAATTTACGATCCAGCGACAGATTCATGG 961
Query 921 TCCAAAATCGAAAACATCTGGAGATTTCCAGATACTAGCCCGAGAGGTCGCACCGTCGGA 980
|| | |||||| ||| ||||| ||||||||||||||||||||||||||||||||| ||||
Sbjct 962 TCGAGAATCGACAACGTCTGGCGATTTCCAGATACTAGCCCGAGAGGTCGCACCGCCGGA 1021
Query 981 GACTTTAGAAGCTCCTCTAAGTTATGGTGTTTCACAGACACTGATTTACAGAGTGAACGT 1040
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1022 GACTTTAGAAGCTCCTCTACGTTATGGTGTTTCACAGACACTGATTTACAGAGTGAACGT 1081
Query 1041 CGATGGGAAACTAACGATGATTCGAGAAATTGGAAACTGGATCTTGAAACTGTACAGCTT 1100
||||||||||||||||||||||||||||||| ||||||||||||| || || ||||||||
Sbjct 1082 CGATGGGAAACTAACGATGATTCGAGAAATTTGAAACTGGATCTTCAATCTATACAGCTT 1141
Query 1101 CCGATGACAGGAAGCTCAGTTTTCGCCGGAAGCTTAGGAGGTGAATCGGTGGTAATGATT 1160
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1142 CCGATGACAGGAAGCTCAGTTTTCGCCGGAAGCTTAGGAGGTGAATCGGTGGTAATGATT 1201
Query 1161 GGCGGCAAAAGAGAGAGTG--G---A-GGTGAAGGAGGAGTGATGATGAAGATGACGACT 1214
||||| ||||||||||||| | | |||||||||||||||||||||||||||||||||
Sbjct 1202 GGCGGTAAAAGAGAGAGTGAAGGTGAAGGTGAAGGAGGAGTGATGATGAAGATGACGACT 1261
Query 1215 GAGAAGAAAATGGGAAAATGGAGTCAT---GTTCACATACCTTCTGATTTCTCTACTCTT 1271
||||||||||||||||||||||||||| ||||| ||||||| ||||||||||||||||
Sbjct 1262 GAGAAGAAAATGGGAAAATGGAGTCATCATGTTCATATACCTTGTGATTTCTCTACTCTT 1321
Query 1272 CCATTTTCACATGCTTCAATCTATGTTTGAAAATCC-AAA-GATTTTATGGTACAACATT 1329
|||||||| ||||||||||||||||||||||||||| ||| |||||||| ||||||||||
Sbjct 1322 CCATTTTCGCATGCTTCAATCTATGTTTGAAAATCCCAAAAGATTTTATAGTACAACATT 1381
Query 1330 GTGTT-TGATCTGATGTAATTTACACCAACACATAGAAAAAACAAAGAACTGGTT 1383
||||| |||||||||||||| |||||||||||||| |||||||||||||||||||
Sbjct 1382 GTGTTCTGATCTGATGTAATATACACCAACACATATAAAAAACAAAGAACTGGTT 1436
> AT3G59940.1 | Symbols: | Galactose oxidase/kelch repeat superfamily
protein | chr3:22142900-22144439 FORWARD LENGTH=1540
Length=1540
Score = 309 bits (167), Expect = 5e-83
Identities = 447/575 (78%), Gaps = 47/575 (8%)
Strand=Plus/Plus
Query 429 AGCGTTTACAACTCCGCGCTGTCCACGTGGCACCGCA-TCGCGTTTCCCGAGGAGGAGCA 487
|||||||| ||| | ||||| |||||||||||| | ||||| || || || | |
Sbjct 470 AGCGTTTATAACGCAACGCTGGACACGTGGCACCG-AGTCGCGATT-CC--TGA--A-CG 522
Query 488 GATCCCGCTT-TTCTGCGAGTGCGTCGTGCTTCAGGACGCCGGGAAGATTCTT-CTCATC 545
||| || || |||||||| ||||| | | |||||||||| ||||| | | || | |||
Sbjct 523 GATTCC-TTTGTTCTGCGAATGCGTTGCGATTCAGGACGCGGGGAA-AGTGTTGTTAATC 580
Query 546 GGCGGTTGGGATCCGGAGACGTTACAGCC-GACGAGAGACGTTCACGTTCTGGA---ATT 601
||||||||||||||||||||||| ||||| | | |||| ||| |||||||| ||
Sbjct 581 GGCGGTTGGGATCCGGAGACGTTGCAGCCTG-TGCGAGATGTTTTTGTTCTGGATTTCTT 639
Query 602 CGCC-G-GAAGGAAGTGG-AG-A----C-G-AG-GTGC--GCCGATGAAGGAATCGCGAT 648
|||| | |||||||| || || | | | || | || ||||||| || || |||
Sbjct 640 CGCCGGAGAAGGAAGCGGAAGAAGGTTCAGAAGAG-GCAGGCCGATGTCGGCGGCGAGAT 698
Query 649 CGTTCTTCGCTTGCGCCTCCGTCGGTTCAACTAAGGTATACGTCGCCGGAGGTCACGACG 708
|||| ||||| || || || || ||||| || ||||| |||||||||||||| || || |
Sbjct 699 CGTTTTTCGCCTGTGCTTCTGTTGGTTCGACGAAGGTTTACGTCGCCGGAGGACATGATG 758
Query 709 ATCAGAAAAACGCTTTACGCTCGGCGGAGGTGTACGACGTCGAGAAAGACGAGTGGTCGA 768
||||||| |||||| | || |||||||| |||||||| || |||||||||||||||||||
Sbjct 759 ATCAGAAGAACGCTCTCCGATCGGCGGAAGTGTACGATGTAGAGAAAGACGAGTGGTCGA 818
Query 769 CGGTTCCTCCGATGACGGAAGGAAGAGACGAATGTCAAGGATTCGCCATTG-GTACGGAT 827
| |||||||||||||||||||||||||||| ||||| |||||| | || | | ||||||
Sbjct 819 TGCTTCCTCCGATGACGGAAGGAAGAGACGAGTGTCACGGATTCTCGATGGCG-ACGGAT 877
Query 828 C-TAAGG-TTTTGCGTATTGAGTGGTTACGGAACGGA-ATCTCAAGGA-AGATTCCGATC 883
| | || ||||| || ||||| ||||| |||||||| | | ||||| | |||||||||
Sbjct 878 CCT--GGATTTTGTGTTTTGAGCGGTTATGGAACGGAGA-CGCAAGGCCA-ATTCCGATC 933
Query 884 TGACGGAGAGATTTACGAGCCAGCT-ACAAATTCCTGGTCCAAAATCGAAAACATCTGGA 942
|||||| ||||||||||| || | | || ||||| ||||| | |||||| || |||||
Sbjct 934 TGACGGCGAGATTTACGATCC-GATTACGAATTCATGGTCGACAATCGAGAATGTCTGGC 992
Query 943 -GATTTCCAGATACT-AGCCCGAGAGGTCGCACCG 975
| ||||| ||| | || ||||||||||||||||
Sbjct 993 CG-TTTCCCGATT-TGAGTCCGAGAGGTCGCACCG 1025
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 68122139565
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5