BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg483545
Length=1708
Score E
Sequences producing significant alignments: (Bits) Value
AT2G44210.2 | Symbols: | Protein of Unknown Function (DUF239) ... 2200 0.0
AT3G13510.1 | Symbols: | Protein of Unknown Function (DUF239) ... 267 3e-70
> AT2G44210.2 | Symbols: | Protein of Unknown Function (DUF239)
| chr2:18280623-18282876 FORWARD LENGTH=1809
Length=1809
Score = 2200 bits (1191), Expect = 0.0
Identities = 1345/1417 (95%), Gaps = 20/1417 (1%)
Strand=Plus/Plus
Query 311 AAGTTTCATTCTTTTGCTGAttt-t-----t--ttttGAG-TT-TTAAACAGAGCCCAGA 360
||||||||||||||||||| ||| | | ||||||| || ||||||||||||||||
Sbjct 375 AAGTTTCATTCTTTTGCTGTTTTCTGGGAATAATTTTGAGTTTCTTAAACAGAGCCCAGA 434
Query 361 TGGAGATATAATTGACTGTGTTCCAATCACTGACCAACCAGCTTTTTCTCATCCTCTGCT 420
||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 435 TGGAGATATGATTGACTGTGTTCCAATCACTGACCAACCAGCTTTTGCTCATCCTCTGCT 494
Query 421 CATTAATCACACTGTCCAGATGTGGCCAAGTTTTAACCCAGAAAGTGTTTTTAGTGAGAG 480
||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||
Sbjct 495 CATTAATCACACTGTCCAGATGTGGCCAAGTTTGAACCCAGAAAGTGTATTTAGTGAGAG 554
Query 481 TAAAGTTTCATCAAAAACTAAGAATCAGCAGTCTAGTTCTATAAAGCAGCTTTGGCATGT 540
|||||||||||||||||| |||||||||||||||| | ||||| | ||||||||||||||
Sbjct 555 TAAAGTTTCATCAAAAACCAAGAATCAGCAGTCTAATGCTATACATCAGCTTTGGCATGT 614
Query 541 GAATGGGAAATGTCCAGTGAACACAATTCCCATCAGAAGAACGAGAAGGCAAGATCTTTA 600
|||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||
Sbjct 615 GAATGGGAAATGTCCAAAGAACACAATTCCCATCAGAAGAACGAGAAGACAAGATCTTTA 674
Query 601 TC-GAGCGAATTCCGTCGAGAATTACGGTAGGAAGAATCAGAAAAGTATCCCTAAACCTA 659
| |||||| |||||| ||||||||||||| |||||||||||| ||||||||||||||||
Sbjct 675 -CAGAGCGAGTTCCGTTGAGAATTACGGTATGAAGAATCAGAAGAGTATCCCTAAACCTA 733
Query 660 AATCTTCTGAGCCACCTAATGTACTTACACAAAATGGTCATCAGCACGCGATAATGTATG 719
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 734 AATCTTCTGAGCCACCTAATGTCCTTACACAAAATGGTCATCAGCACGCGATAATGTATG 793
Query 720 TCGAAGATGGTATTTTCTACGGGGCTAAAGCGAAGATAAATGTATGGAAGCCTGATGTCG 779
|||||||||| |||||||||||||||||||||||||||||||||||||||| ||||| |
Sbjct 794 TCGAAGATGGGGTTTTCTACGGGGCTAAAGCGAAGATAAATGTATGGAAGCCGGATGTTG 853
Query 780 AAATGCCTAATGAGTTTAGCTTGGCTCAGATTTGGGTTTTGGGTGGAAATTTTAACTCTG 839
|||||||||||||||||||||| ||||||||||||||||| ||||||||||| |||||||
Sbjct 854 AAATGCCTAATGAGTTTAGCTTAGCTCAGATTTGGGTTTTAGGTGGAAATTTCAACTCTG 913
Query 840 ATCTTAATAGTATTGAAGCTGGTTGGCAGGTCAGCCCACAATTGTATGGTGATAACCGGA 899
|||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||
Sbjct 914 ATCTTAATAGTATTGAAGCTGGCTGGCAGGTCAGCCCACAATTGTATGGTGATAATAGGA 973
Query 900 CCAGACTCTTCACTTATTGGACTAGTGATGCATACCAAGGCACAGGCTGCTATAATCATC 959
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 974 CCAGACTCTTCACTTATTGGACTAGTGATGCATACCAAGGCACAGGCTGCTATAATCTTC 1033
Query 960 TGTGCTCAGGATTTGTTCAAATTAATAGAGAAATCGCAATGGGTGGATCGATCTCTCCTT 1019
| |||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||
Sbjct 1034 TATGCTCAGGATTTGTTCAAATCAATAGAGAAATCGCAATGGGTGGATCAATCTCTCCTT 1093
Query 1020 TATCGAACTACGGAAACTCTCAGTATGACATTACCATACTCATCTGGAAGGACCCAAAAG 1079
|||| ||||| ||||||||||| |||||||| |||||||||||||||||||| |||||||
Sbjct 1094 TATCAAACTATGGAAACTCTCAATATGACATCACCATACTCATCTGGAAGGATCCAAAAG 1153
Query 1080 AAGGACATTGGTGGTTACAATTTGGAGAGAAATACATAATCGGATACTGGCCAGCTTCAC 1139
||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||
Sbjct 1154 AAGGACATTGGTGGTTACAGTTTGGAGAGAAATACATAATAGGATACTGGCCAGCTTCAC 1213
Query 1140 TCTTCTCTTACTTATCAGAAAGTGCATCGATGATCGAATGGGGAGGCGAAGTGGTTAACT 1199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1214 TCTTCTCTTACTTATCAGAAAGTGCATCGATGATCGAATGGGGAGGCGAAGTGGTTAACT 1273
Query 1200 CGCAGTCCGAGGAAGGACAACACACGACCACTCAGATGGGAAGTGGGAGGTTTGCAGAGG 1259
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1274 CGCAGTCCGAGGAAGGACAACACACAACCACTCAGATGGGAAGTGGGAGGTTTGCAGAGG 1333
Query 1260 AAGGTTGGGGAAAAGCAAGTTACTTCAAGAACGTTCAAGTAGTCGATGGATCGAATGAAC 1319
|||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1334 AAGGTTGGGGAAAAGCGAGTTACTTCAAGAACGTTCAAGTAGTTGATGGATCGAATGAAC 1393
Query 1320 TGAGAAACCCGGAAAATCTTCAAGTCTTTACTGATCAAGAGAACTGTTACAATGTGAAAA 1379
||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1394 TGAGAAACCCGGAGAATCTTCAAGTGTTTACTGATCAAGAGAACTGTTACAATGTGAAAA 1453
Query 1380 GTGGGAATGGAGGTTCTTGGGGAAGTTACTTCTACTATGGTGGTCCTGGTCGAAACCCTA 1439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1454 GTGGGAATGGAGGTTCTTGGGGAAGTTACTTCTACTATGGTGGTCCTGGTCGAAACCCTA 1513
Query 1440 ATTGCCCTTAA-GATTTGGCCGACTTACTCATATTGCAGATCATTCCAAATCAATTGTAT 1498
||||||||||| ||||||| ||||||||||| ||||||||||||||||||||||||||||
Sbjct 1514 ATTGCCCTTAAAGATTTGGTCGACTTACTCACATTGCAGATCATTCCAAATCAATTGTAT 1573
Query 1499 AAAAA-Catataatatatatata--CACATTCTTAAGTATATTATTAATTTCAGGTTTGA 1555
||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1574 AAAAAACATATAATATATATATATACACATTCTTAAGTATATTATTAATTTCAGGTTTGA 1633
Query 1556 AGAGTGGTTTATTGTATATTCAAATTC-TGT--AGAATTTGTTTGTTTGTTTGTTTGAGA 1612
|||||||| ||| |||||||||||||| | | ||||||||||||||||| |||||||||
Sbjct 1634 AGAGTGGTATATGGTATATTCAAATTCATCTGCAGAATTTGTTTGTTTGTGTGTTTGAGA 1693
Query 1613 GTGTTTTCTCTGTTTCCATGGAGTGAAGAGAAGATAAATTTCTTA-AAAGAACATGGTCC 1671
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1694 GTGTTTTCTCTGTTTCCATGGAGTGAAGAGAAGATAAATTTCTTTTAAAGAACATGGTCC 1753
Query 1672 CATGTGTATACTGAAATCAAATGATCACATTATTAAT 1708
|||||||||||||||||||||||||| ||||||||||
Sbjct 1754 CATGTGTATACTGAAATCAAATGATCCCATTATTAAT 1790
Score = 361 bits (195), Expect = 2e-98
Identities = 292/333 (88%), Gaps = 30/333 (9%)
Strand=Plus/Plus
Query 1 TTTTTATGAAGGTTTTGCCAAAGTGTCATTAGTGTCCAGAATTAAACGCAATCCACTTCA 60
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 14 TTTTTATGAAGGTTTTGCCAAAGTGTCATTAGTGCCCAGAATTAAACGCAATCCACTTCA 73
Query 61 ATCCAAAA---C--AC---------A--AAGA-A-AGAAAG-AAGAA-AAACCTCTCATC 100
|||||||| | || | || | | || ||| ||||| ||||||||||||
Sbjct 74 ATCCAAAATCCCATACTAAATTAAAACCAACACACAGGAAGAAAGAAGAAACCTCTCATC 133
Query 101 TTCTCCTCTCTTTCTGTTAAAGAAAGCTTAAACCTTTCTGGGTTTCTTTAAACTATGGCT 160
||| |||||| ||||||| |||||||||||||||||||||||||||||| |||||| |
Sbjct 134 TTCCCCTCTC-TTCTGTTGAAGAAAGCTTAAACCTTTCTGGGTTTCTTTTAACTAT-G-- 189
Query 161 GCTAATTGGACAAGGGTTATTTTCTTCTTAGCTCTGGTAATGACGGTGGCGATTCTTGCT 220
|| ||||||||||| ||||||||||||||||||||||||||||| ||||||||||
Sbjct 190 GC------GACAAGGGTTAGTTTCTTCTTAGCTCTGGTAATGACGGTGGTGATTCTTGCT 243
Query 221 CCTTCTGTCGTCTCCGGCGAAAATGGTTTTTCCGATCTTAAAATCCGTACTCACTTGAAA 280
|||||||||||||| || |||||||| |||||||||||||||||||||||||||||||||
Sbjct 244 CCTTCTGTCGTCTCTGGAGAAAATGGGTTTTCCGATCTTAAAATCCGTACTCACTTGAAA 303
Query 281 CGACTCAACAAGCCAGCTCTCAAATCGATTAAG 313
|||||||||||||||||||||||||||||||||
Sbjct 304 CGACTCAACAAGCCAGCTCTCAAATCGATTAAG 336
> AT3G13510.1 | Symbols: | Protein of Unknown Function (DUF239)
| chr3:4403500-4406091 FORWARD LENGTH=1886
Length=1886
Score = 267 bits (144), Expect = 3e-70
Identities = 481/640 (75%), Gaps = 37/640 (6%)
Strand=Plus/Plus
Query 689 CAAAATGGTCATCAGCACGCGATA-ATGTATGTCGAA-GATGGTATTTTCTACGGGGCTA 746
|||||||||||||| ||||| ||| | ||||| ||| || | || | |||||| ||||
Sbjct 778 CAAAATGGTCATCAACACGCCATAGCT-TATGTGGAAGGA-GATAAGTACTACGGAGCTA 835
Query 747 AAGCGAAGATAAATGTATGGAAGCCTGATG-T-CGA-AATGC-CTAATGAGTTTAGCTTG 802
| |||| | ||||| ||| |||| | | | | | || | | || || || ||||||
Sbjct 836 AGGCGACTTTGAATGTGTGGGAGCC-AAAGATAC-AGAA--CACAAACGAATTCAGCTTG 891
Query 803 GCTCAGATTTGGGTTTTGGGTGG-AAATTTTAACTCTGATCTTAATAGTATTGAAGCTGG 861
| ||||| ||| ||||||| || ||| || |||||||| ||||||||||||||
Sbjct 892 TCGCAGATATGGCTTTTGGGGGGTTCCTTTGGAC-AAGATCTTAACAGTATTGAAGCTGG 950
Query 862 TTGGCAGGTCAGCCCACAAT-TGTATGGTGATAACCGGACCAGACTCTTCACTTATTGGA 920
|||||||| || || || | ||||| || || || |||||||||||||| ||||
Sbjct 951 CTGGCAGGTGAGTCC-GGATCTATATGGAGACAATAACACAAGACTCTTCACTTACTGGA 1009
Query 921 CTAGTGATGCATACCAAGGC-ACAGGCTGCTATAATCATCTGTGCTCAGGATTT-GTTCA 978
|||||||||| || ||| || || || ||||| |||| ||| |||||||| ||| ||||
Sbjct 1010 CTAGTGATGCCTATCAA-GCTACCGGTTGCTACAATCTTCTTTGCTCAGG-TTTCATTCA 1067
Query 979 AATTAATAGAGAAATCGCAATGGGTG-GATCGATCTCTCCTTTATC-GAACTACGGAAAC 1036
||| || || || || |||||||| | | | ||||| || | || | | ||| | ||
Sbjct 1068 AATCAACAGTGACATAGCAATGGGAGCAAGC-ATCTCACCAGTCTCTGGA-TACCGCAAT 1125
Query 1037 TCTCAGTATGACATTACCATACTCATCTGGAAGGACCCAAAAGAAGGACATTGGTGGTTA 1096
|| |||||||| || | || || ||||||||||| ||||| || |||||||||||| |
Sbjct 1126 TCCCAGTATGATATCAGTATTCTAATCTGGAAGGATCCAAAGGAGGGACATTGGTGGATG 1185
Query 1097 CAATTT-GGAGA-GAAATACATAATCGGATACTGGCCAGC-TTCACTCTTCTCTTACTTA 1153
|||||| ||| | | || | | || ||||||||| | || || ||||| ||| ||
Sbjct 1186 CAATTTGGGA-ATG-GGTATGTTTTGGGGTACTGGCCATCATT-TCTGTTCTCCTACCTA 1242
Query 1154 TCAGAAAGTGCATCGATGATCGAATGGGGAGGCGAAGTGGTTAACTCGCAGTCCGAGGAA 1213
||||||||||||||||||||||||||||||| ||||| || ||||| ||||| || ||
Sbjct 1243 ACAGAAAGTGCATCGATGATCGAATGGGGAGGAGAAGTTGTGAACTCACAGTC--AG-AA 1299
Query 1214 GGACAACACACGACCACTCAGATGGGAAGTGGG-AGGTTTGCAGAGGAAGGTTGGGGAAA 1272
|| || ||||| || |||||||||||||| | ||| |||| ||||||| | ||
Sbjct 1300 GGCCACCACACTTGGACACAGATGGGAAGTGGTCAC-TTTCCAGAAGAAGGTTTCAGTAA 1358
Query 1273 AGCAAGTTACTT-CAAGAACGTTCAAGTAGTCGATGGATC 1311
|||||||||||| | |||| ||||||| || ||||||||
Sbjct 1359 AGCAAGTTACTTTCG-GAACATTCAAGTCGTAGATGGATC 1397
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 84437316690
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5