BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg483548
Length=1352
Score E
Sequences producing significant alignments: (Bits) Value
AT2G44250.1 | Symbols: | Protein of Unknown Function (DUF239) ... 2037 0.0
> AT2G44250.1 | Symbols: | Protein of Unknown Function (DUF239)
| chr2:18293457-18295536 FORWARD LENGTH=1352
Length=1352
Score = 2037 bits (1103), Expect = 0.0
Identities = 1273/1355 (94%), Gaps = 11/1355 (1%)
Strand=Plus/Plus
Query 1 ATGATGCTTAATCAGACAGTGATCTTCCTCCTTCTTTGGGTGATCATAG-ATCTTGTAGT 59
||||||||||||||||||||||||||| ||||||||||||||||||||| | ||||||||
Sbjct 1 ATGATGCTTAATCAGACAGTGATCTTCTTCCTTCTTTGGGTGATCATAGCA-CTTGTAGT 59
Query 60 CGGAATTACTTTGGCCGGAAAGATCAAACTTTCTGATTTACATGAGCAGAAAATCGAACA 119
|| ||||||||||||||||||||||| | |||||||| | ||||||||||||||||||||
Sbjct 60 CGAAATTACTTTGGCCGGAAAGATCACAGTTTCTGATATCCATGAGCAGAAAATCGAACA 119
Query 120 ACGGTTGAAACAACTCAACAAACCCACCGTTAAATCTATCCATAGTCCAGATGGAGATAT 179
||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 120 ACGGTTGAACCAACTCAACAAACCCGCCGTTAAATCTATCCATAGTCCAGATGGAGATAT 179
Query 180 AATTGATTGTGTATGGATATATCACCAACCAGCTTTTGATCATCCTTTACTCAAAAACCA 239
||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 180 AATCGATTGTGTATGGATCTATCACCAACCAGCTTTTGATCATCCTTTACTCAAAAACCA 239
Query 240 CACCATTCAGATGTGGCCGAAAAGTGACTCGATAAGGGACAAGACTGGAGGTAACAAGAC 299
||||||||||||| |||||||||||||||||| ||||||||| |||||||||||||||||
Sbjct 240 CACCATTCAGATGAGGCCGAAAAGTGACTCGACAAGGGACAAAACTGGAGGTAACAAGAC 299
Query 300 AGACATTATACATCAATTGTGGCGCACAAAAGGTGAATGTCCTGAGGACACTATTCCTAT 359
||||||||| ||||||||||||||||| ||||||||||||||| || |||||||||| ||
Sbjct 300 AGACATTATCCATCAATTGTGGCGCACGAAAGGTGAATGTCCTAAGAACACTATTCCCAT 359
Query 360 CAGAAGAAGAACAAGAGATGATCTTTTAAGATCAGATTCCATCGAAACTCATGGAAGAAA 419
||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||
Sbjct 360 CAGAAGAAGAACAAGAGATGATCTTCTAAGATCAGATTCCATCAAAACTCATGGAAGAAA 419
Query 420 GAACCCACCAACCATTTTTCCAACTACTTATCACCTCCCCGATGATCAAAAAGAAGTTCA 479
||||||||||||||||| |||||||||||||||||||||||||||||| | |||||||||
Sbjct 420 GAACCCACCAACCATTTCTCCAACTACTTATCACCTCCCCGATGATCAGACAGAAGTTCA 479
Query 480 TGAGCATGCGAGTGTGCACCTGGACTATGGTGAATACCATGGCAGCAAGAGCCGTATAAG 539
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 480 TGAGCATGCGAGTGTGTACCTGGACTATGGTGAATACCATGGCAGCAAGAGCCGTATAAG 539
Query 540 TATATGGAAACCAGACGTTTCAAATACGACCGAGTTTAGTTTGGCTCAAACATGGGTCGT 599
|||||||| |||||||| || |||| |||||||||||||||||||||||||||||||||
Sbjct 540 TATATGGAGACCAGACG-TT--AATATGACCGAGTTTAGTTTGGCTCAAACATGGGTCGT 596
Query 600 CAATGGAGATTGGGACAATGGTTTGAACACTTTGGAGTCTGGTTGGCAGGTCCTACATTG 659
| |||||||||||||| || |||||||||| ||||||||||||||||| |||||||||
Sbjct 597 CGGTGGAGATTGGGACACTGTTTTGAACACTGTGGAGTCTGGTTGGCAGATCCTACATTC 656
Query 660 TATGTACGGTGACAATAATACAAGATTTTTCACCTATTGGACGAGCAATTCATATGGAAA 719
||||||||||||||||||||||||| ||||| ||| |||||||||| ||||||||||| |
Sbjct 657 TATGTACGGTGACAATAATACAAGACTTTTCGCCTTTTGGACGAGCGATTCATATGGAGA 716
Query 720 GAACAGCTGCTACAATCTTGACTGTCCAGGCTTTGTTCAAGTGAATAAAGATGTTGCCCT 779
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 717 CAACAGCTGCTACAATCTTGACTGTCCAGGCTTTGTTCAAGTGAATAAAGATATTGCCCT 776
Query 780 TGGTGCAGCTTTCAACAGTATCTCGACCTACAATGGTAAACAATATGATTTCCTTCTAAC 839
||||||||| |||||| ||||||||||||||||||||| ||||||||||||||||||||
Sbjct 777 TGGTGCAGCCCTCAACACTATCTCGACCTACAATGGTAACCAATATGATTTCCTTCTAAC 836
Query 840 TATTGAGAAGGAACAAGATACCGGACTTTGGTGGCTTAAGTTTGACACAT-ATCAAGTTG 898
||||||||||||||||||||||||||||||||||||||||||||| || | ||| ||| |
Sbjct 837 TATTGAGAAGGAACAAGATACCGGACTTTGGTGGCTTAAGTTTGATAC-TCATCTAGTCG 895
Query 899 GATACTGGCCAAGCTTTCTAGTCCCGAAGCTAGCAGACTCAGCACGGATGATCGCTTGGG 958
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 896 GATACTGGCCAAGCTTTCTAGTCCCGAAGCTAGCAGACTCAGCACGGATGATCGCTTGGG 955
Query 959 GAGGTGAAATTGCGCATGATGCTAGTGGCCAAAAGGAACACACGAGTACGCAAATGGGGA 1018
|||||||||||| | ||||||||||||||||||| ||||| ||| ||||||||||||||
Sbjct 956 GAGGTGAAATTGTGTATGATGCTAGTGGCCAAAATGAACATACGCTTACGCAAATGGGGA 1015
Query 1019 GTGGCCATTTCGCGGAAGAAGGTTTTAAGAAGGCGGCTTACATCAATAGCATAGAGTACA 1078
|||||||||||||||||||||| ||||||||||||||||| ||||||| |||||||||||
Sbjct 1016 GTGGCCATTTCGCGGAAGAAGGGTTTAAGAAGGCGGCTTATATCAATAACATAGAGTACA 1075
Query 1079 TCGATAAAGCTAATTATCCAATCAAACCCTCTCCTCAAAATCTTGAAGCTA-TAGTTACT 1137
|||||||| ||||| |||| |||||||||| ||||||||||||||||||| | ||||||
Sbjct 1076 TCGATAAATCTAATCATCCGATCAAACCCTTTCCTCAAAATCTTGAAGCTTCT-GTTACT 1134
Query 1138 CGGCCTGAATGTTATAACCTCAAGGTTGGCTCTAGCCGAAGGTGGGGAACTTACATTTTC 1197
||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1135 CGGCCTGAATGCTATAACCTCAAGGTTGGCTCTAGCCGAAGATGGGGAACTTACATTTTC 1194
Query 1198 TATGGCGGACCTGGACTTAACCCTCAATGCCTATGAAAAGTGACATGATTTTCCGAAATT 1257
||||| |||||||||| ||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1195 TATGGTGGACCTGGACGTAACCCTCAATGCCTATGAAAAGTGACATGATTTTTCGAAATT 1254
Query 1258 TCTTTAGAAAATGTTTGGGACAACCTTTGTGATTGAAC-GTAATAGCGTTCTTAAGATGT 1316
| ||||||||||||||||||||||| |||||||||||| | ||||||||||| |||||||
Sbjct 1255 TATTTAGAAAATGTTTGGGACAACCCTTGTGATTGAACTG-AATAGCGTTCTAAAGATGT 1313
Query 1317 AAACTATTGAAGACTAATAAATGGTTTTGCATTTG 1351
||||| || ||||||||||||||||||||||||||
Sbjct 1314 AAACTTTTTAAGACTAATAAATGGTTTTGCATTTG 1348
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66565922670
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5