BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg483550
Length=1829
Score E
Sequences producing significant alignments: (Bits) Value
AT2G44260.2 | Symbols: | Plant protein of unknown function (DU... 2294 0.0
AT2G44255.1 | Symbols: | other RNA | chr2:18295756-18297567 RE... 1144 0.0
> AT2G44260.2 | Symbols: | Plant protein of unknown function (DUF946)
| chr2:18295838-18297867 FORWARD LENGTH=2030
Length=2030
Score = 2294 bits (1242), Expect = 0.0
Identities = 1429/1519 (94%), Gaps = 14/1519 (1%)
Strand=Plus/Plus
Query 315 GAGGACCAGACAATCTCGGAGCTACATTCTTTGAACCATCCTCAATCCCTTCCGGTTTCT 374
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 455 GAGGACCAGACAATCTCGGAGCTACATTCTTTGAACCATCCTCAATCCCTTCCGGTTTCT 514
Query 375 CCATCCTCGGCTACTACGCTCAACCAAACAACCGTAAACTTTTCGGTTGGGTACTCACAG 434
||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 515 CCATCCTTGGCTACTACGCTCAACCAAACAACCGTAATCTTTTCGGTTGGGTACTCACAG 574
Query 435 CTAGAGATCTCTCAAGCAACACCTTAAAACCTCCAGTAGATTACACCCTCGTAGGAAACA 494
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 575 CTAGAGATCTCTCAAGCAACACCTTAAAACCACCAGTAGATTACACCCTCGTAGGAAACA 634
Query 495 CCGAGTCACTCAAAATCAAACAAGACGGAACTGGGTATTTCTGGCAGCCCGTTCCTCCTG 554
|||||||||||||||| |||||||||||||| || || |||||||| |||||||||||||
Sbjct 635 CCGAGTCACTCAAAATTAAACAAGACGGAACCGGATACTTCTGGCAACCCGTTCCTCCTG 694
Query 555 ATGGATATCAAGCCGTTGGTCTAATAGTCACAAACTCCTCACAAAAGCCATCTCTAGACA 614
||||||||||||||||||| |||||||||||||||| ||||||||| ||| |||||||||
Sbjct 695 ATGGATATCAAGCCGTTGGCCTAATAGTCACAAACTACTCACAAAAACCACCTCTAGACA 754
Query 615 AACTAAGCTGCGTTCGATCCGATTTAACCGAACAATGTGAAGCTGATACATGGATATGGG 674
||||| ||||| | ||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 755 AACTACGCTGCATCCGATCAGATTTAACCGAACAATGTGAAGCTGATACATGGATATGGG 814
Query 675 GAACAAACGGAGTCAACATCTCAAATCTAAGACCAACCACAAGAGGAACACAAGCTACAG 734
| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 815 GCACAAACGGAGTCAACATCTCAAATCTAAAACCAACCACAAGAGGAACACAAGCTACAG 874
Query 735 GTGTCTCTGTAGGTACATTCACTTGCCAAACCCAAAATTCTTCTCTTCCTCCTCCAGCTT 794
| |||| |||||||||||| || || ||||||||||| | || | | | |||||| | |
Sbjct 875 GAGTCTATGTAGGTACATTTACATGGCAAACCCAAAA--C-TC-C-T-CGCCTCCATCAT 928
Query 795 TATCTTGCATAAAGAACACGAAATTGGACTTCTCTACAATGCCAAATGGGTCCCAAATCG 854
|||||||| |||||||||||||| | ||||||||||||||||||||||||||||||||||
Sbjct 929 TATCTTGCTTAAAGAACACGAAACTCGACTTCTCTACAATGCCAAATGGGTCCCAAATCG 988
Query 855 AAGAATTGTTCCAAACTTATTCTCCATGGATCTATTTCCATCCAGACGAAGAATATCTAC 914
|||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||
Sbjct 989 AAGAATTGTTCCAAACTTTTTCTCCATGTATCTATTTCCATCCAGACGAAGAATATCTAC 1048
Query 915 CTTCCTCTGTCAATTGGTACTTCAACAACGGAGCATTACTATACAAGAAAGGCGAAGAAT 974
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1049 CTTCCTCTGTCACTTGGTACTTCAACAACGGAGCATTACTATACAAGAAAGGCGAAGAAT 1108
Query 975 CGAAACCAATCCCTATCGAATCAAACGGCTCTAATCTTCCACAAGGCGGATCAAACGATG 1034
|||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||
Sbjct 1109 CGAAACCAATCCCTATCGAATCAAACGGTTCTAATCTTCCACAAGGAGGATCAAACGATG 1168
Query 1035 GATCATACTGGCTAGATCTTCCAATAGACAAAAATGGTAAAGAGAGAGTCAAAAAAGGAG 1094
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1169 GATCATACTGGCTAGATCTTCCTATAGACAAAAATGGTAAAGAGAGAGTCAAAAAAGGAG 1228
Query 1095 ACTTACAAAGCACAAAAGTGTATCTTCACATCAAACCAATGCTTGGAGCAACATTCACAG 1154
|||||||||||||||||||||| ||||| |||||||||||||| ||||||||||||||||
Sbjct 1229 ACTTACAAAGCACAAAAGTGTACCTTCATATCAAACCAATGCTCGGAGCAACATTCACAG 1288
Query 1155 ACATATCAATCTGGATCTTTTACCCTTTCAATGGTCCAGCAAAAGCTAAAGTCAAATTCG 1214
| |||||||||||||| ||||||||||||||||| ||||||||||| || ||||||||||
Sbjct 1289 ATATATCAATCTGGATATTTTACCCTTTCAATGGACCAGCAAAAGCCAAGGTCAAATTCG 1348
Query 1215 TGAATCTACCATTGGGGAGAATCGGAGAACACATTGGAGATTGGGAACACACGACGTTAC 1274
| |||||||| ||||| ||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1349 TAAATCTACCGTTGGGTAGAATCGGAGAACACATTGGAGATTGGGAACACACGACGCTAC 1408
Query 1275 GGATCAGTAATTTCACCGGAGAGCTATGGAGAGTGTTCTTATCGCAGCATAGCGGTGGAG 1334
||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct 1409 GGATCAGTAATTTCACCGGAGAGCTTTGGAGAGTGTTCTTATCGCAGCATAGTGGTGGAA 1468
Query 1335 TTTGGGTCGACGCTTGCGATTTAGAGTTCCAAGGAGGAGGAGGAAGTAACAAGTTTGTGG 1394
||||| |||| ||||||||||| ||||||||| || ||||||| ||||||||||||||
Sbjct 1469 TTTGGATCGATGCTTGCGATTTGGAGTTCCAA-GA--CGGAGGAAATAACAAGTTTGTGG 1525
Query 1395 CGTACGCTTCGCTTCATGGACACGCGATGTATCCGAAACCTGGATTGGTGTTGCAAGGAG 1454
||||||| ||||| ||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1526 CGTACGCATCGCTACATGGACACGCGATGTATCCGAAACCTGGGTTGGTGTTGCAAGGAG 1585
Query 1455 ACGATGGGGTTGGGATTAGGAACGATACGGCGAAGGGTAAAAAGGTAATTGATACGGGGT 1514
|||||||||||||||||||||| ||||||| ||| ||||| ||||| ||||||||||||
Sbjct 1586 ACGATGGGGTTGGGATTAGGAATGATACGGGGAAAGGTAAGAAGGTGCTTGATACGGGGT 1645
Query 1515 TAGGGTATGAGGTGATAGCGGCGGAGTATGACGGCGGAGGAGTGGTGGAGCCGCCGTGGG 1574
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1646 TAGGGTATGAGGTGATTGCGGCGGAGTATGACGGCGGAGGAGTGGTGGAGCCGCCGTGGG 1705
Query 1575 TTAATTATTTCAGGAAGTGGGGACCGAAGATTGATTATAATGTTGATGATGAAGTTAGGA 1634
|||| ||||||||||||||||| |||||||||||||||||||||||||||||||||| ||
Sbjct 1706 TTAAGTATTTCAGGAAGTGGGGGCCGAAGATTGATTATAATGTTGATGATGAAGTTAAGA 1765
Query 1635 GTGTTGAGAGGATATTGCCTGGGCTTTTGAAAAAGGCCTTTGTTAAATTTGTGAAGAAGA 1694
|||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1766 GTGTGGAGAGGATATTGCCTGGGCTTTTGAAAAAGGCTTTTGTTAAATTTGTGAAGAAGA 1825
Query 1695 TTCCTGATGAAGTTTATGGTGAAGATGGGCCTACTGGGCCTAAACTCAAGAGTAATTGGG 1754
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1826 TTCCTGATGAAGTTTATGGTGAAGATGGGCCTACTGGGCCTAAACTCAAGAGTAATTGGG 1885
Query 1755 CTGGTGACGAAAGTTGATGAATTTGTTTGTTTTTCTTTTAGATTGTTTGCCT--T--GAT 1810
||||||| ||||||||||||| | ||| ||||||||||||||||||||| | | |||
Sbjct 1886 CTGGTGATGAAAGTTGATGAAAT-GTTGGTTTTTCTTTTAGATTGTTTGTTTGGTTTGAT 1944
Query 1811 TCTTTGTTTATAAAATTCT 1829
||||||| |||||||||||
Sbjct 1945 TCTTTGTATATAAAATTCT 1963
Score = 95.3 bits (51), Expect = 2e-18
Identities = 59/63 (94%), Gaps = 0/63 (0%)
Strand=Plus/Plus
Query 252 TGATGGTTTTGCGAAACGAACAATTGACTTGGGTGGTGGTCTCGAAGTTAGTCAAGTTTC 311
|||||||||||||||| |||| |||||||| || ||||||||||||||||||||||||||
Sbjct 363 TGATGGTTTTGCGAAAGGAACCATTGACTTAGGAGGTGGTCTCGAAGTTAGTCAAGTTTC 422
Query 312 GAC 314
|||
Sbjct 423 GAC 425
> AT2G44255.1 | Symbols: | other RNA | chr2:18295756-18297567
REVERSE LENGTH=1690
Length=1690
Score = 1144 bits (619), Expect = 0.0
Identities = 702/742 (95%), Gaps = 6/742 (1%)
Strand=Plus/Minus
Query 315 GAGGACCAGACAATCTCGGAGCTACATTCTTTGAACCATCCTCAATCCCTTCCGGTTTCT 374
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1154 GAGGACCAGACAATCTCGGAGCTACATTCTTTGAACCATCCTCAATCCCTTCCGGTTTCT 1095
Query 375 CCATCCTCGGCTACTACGCTCAACCAAACAACCGTAAACTTTTCGGTTGGGTACTCACAG 434
||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1094 CCATCCTTGGCTACTACGCTCAACCAAACAACCGTAATCTTTTCGGTTGGGTACTCACAG 1035
Query 435 CTAGAGATCTCTCAAGCAACACCTTAAAACCTCCAGTAGATTACACCCTCGTAGGAAACA 494
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1034 CTAGAGATCTCTCAAGCAACACCTTAAAACCACCAGTAGATTACACCCTCGTAGGAAACA 975
Query 495 CCGAGTCACTCAAAATCAAACAAGACGGAACTGGGTATTTCTGGCAGCCCGTTCCTCCTG 554
|||||||||||||||| |||||||||||||| || || |||||||| |||||||||||||
Sbjct 974 CCGAGTCACTCAAAATTAAACAAGACGGAACCGGATACTTCTGGCAACCCGTTCCTCCTG 915
Query 555 ATGGATATCAAGCCGTTGGTCTAATAGTCACAAACTCCTCACAAAAGCCATCTCTAGACA 614
||||||||||||||||||| |||||||||||||||| ||||||||| ||| |||||||||
Sbjct 914 ATGGATATCAAGCCGTTGGCCTAATAGTCACAAACTACTCACAAAAACCACCTCTAGACA 855
Query 615 AACTAAGCTGCGTTCGATCCGATTTAACCGAACAATGTGAAGCTGATACATGGATATGGG 674
||||| ||||| | ||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 854 AACTACGCTGCATCCGATCAGATTTAACCGAACAATGTGAAGCTGATACATGGATATGGG 795
Query 675 GAACAAACGGAGTCAACATCTCAAATCTAAGACCAACCACAAGAGGAACACAAGCTACAG 734
| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 794 GCACAAACGGAGTCAACATCTCAAATCTAAAACCAACCACAAGAGGAACACAAGCTACAG 735
Query 735 GTGTCTCTGTAGGTACATTCACTTGCCAAACCCAAAATTCTTCTCTTCCTCCTCCAGCTT 794
| |||| |||||||||||| || || ||||||||||| | || | | | |||||| | |
Sbjct 734 GAGTCTATGTAGGTACATTTACATGGCAAACCCAAAA--C-TC-C-T-CGCCTCCATCAT 681
Query 795 TATCTTGCATAAAGAACACGAAATTGGACTTCTCTACAATGCCAAATGGGTCCCAAATCG 854
|||||||| |||||||||||||| | ||||||||||||||||||||||||||||||||||
Sbjct 680 TATCTTGCTTAAAGAACACGAAACTCGACTTCTCTACAATGCCAAATGGGTCCCAAATCG 621
Query 855 AAGAATTGTTCCAAACTTATTCTCCATGGATCTATTTCCATCCAGACGAAGAATATCTAC 914
|||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||
Sbjct 620 AAGAATTGTTCCAAACTTTTTCTCCATGTATCTATTTCCATCCAGACGAAGAATATCTAC 561
Query 915 CTTCCTCTGTCAATTGGTACTTCAACAACGGAGCATTACTATACAAGAAAGGCGAAGAAT 974
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 560 CTTCCTCTGTCACTTGGTACTTCAACAACGGAGCATTACTATACAAGAAAGGCGAAGAAT 501
Query 975 CGAAACCAATCCCTATCGAATCAAACGGCTCTAATCTTCCACAAGGCGGATCAAACGATG 1034
|||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||
Sbjct 500 CGAAACCAATCCCTATCGAATCAAACGGTTCTAATCTTCCACAAGGAGGATCAAACGATG 441
Query 1035 GATCATACTGGCTAGATCTTCC 1056
||||||||||||||||||||||
Sbjct 440 GATCATACTGGCTAGATCTTCC 419
Score = 612 bits (331), Expect = 4e-174
Identities = 391/420 (93%), Gaps = 3/420 (1%)
Strand=Plus/Minus
Query 1177 CCCTTTCAATGGTCCAGCAAAAGCTAAAGTCAAATTCGTGAATCTACCATTGGGGAGAAT 1236
|||||||||||| ||||||||||| || ||||||||||| |||||||| ||||| |||||
Sbjct 420 CCCTTTCAATGGACCAGCAAAAGCCAAGGTCAAATTCGTAAATCTACCGTTGGGTAGAAT 361
Query 1237 CGGAGAACACATTGGAGATTGGGAACACACGACGTTACGGATCAGTAATTTCACCGGAGA 1296
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 360 CGGAGAACACATTGGAGATTGGGAACACACGACGCTACGGATCAGTAATTTCACCGGAGA 301
Query 1297 GCTATGGAGAGTGTTCTTATCGCAGCATAGCGGTGGAGTTTGGGTCGACGCTTGCGATTT 1356
||| |||||||||||||||||||||||||| |||||| ||||| |||| |||||||||||
Sbjct 300 GCTTTGGAGAGTGTTCTTATCGCAGCATAGTGGTGGAATTTGGATCGATGCTTGCGATTT 241
Query 1357 AGAGTTCCAAGGAGGAGGAGGAAGTAACAAGTTTGTGGCGTACGCTTCGCTTCATGGACA 1416
||||||||| || ||||||| ||||||||||||||||||||| ||||| ||||||||
Sbjct 240 GGAGTTCCAA-GA--CGGAGGAAATAACAAGTTTGTGGCGTACGCATCGCTACATGGACA 184
Query 1417 CGCGATGTATCCGAAACCTGGATTGGTGTTGCAAGGAGACGATGGGGTTGGGATTAGGAA 1476
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 183 CGCGATGTATCCGAAACCTGGGTTGGTGTTGCAAGGAGACGATGGGGTTGGGATTAGGAA 124
Query 1477 CGATACGGCGAAGGGTAAAAAGGTAATTGATACGGGGTTAGGGTATGAGGTGATAGCGGC 1536
||||||| ||| ||||| ||||| |||||||||||||||||||||||||||| |||||
Sbjct 123 TGATACGGGGAAAGGTAAGAAGGTGCTTGATACGGGGTTAGGGTATGAGGTGATTGCGGC 64
Query 1537 GGAGTATGACGGCGGAGGAGTGGTGGAGCCGCCGTGGGTTAATTATTTCAGGAAGTGGGG 1596
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 63 GGAGTATGACGGCGGAGGAGTGGTGGAGCCGCCGTGGGTTAAGTATTTCAGGAAGTGGGG 4
Score = 95.3 bits (51), Expect = 2e-18
Identities = 59/63 (94%), Gaps = 0/63 (0%)
Strand=Plus/Minus
Query 252 TGATGGTTTTGCGAAACGAACAATTGACTTGGGTGGTGGTCTCGAAGTTAGTCAAGTTTC 311
|||||||||||||||| |||| |||||||| || ||||||||||||||||||||||||||
Sbjct 1246 TGATGGTTTTGCGAAAGGAACCATTGACTTAGGAGGTGGTCTCGAAGTTAGTCAAGTTTC 1187
Query 312 GAC 314
|||
Sbjct 1186 GAC 1184
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 90511582635
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5