BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg483552
Length=1165
Score E
Sequences producing significant alignments: (Bits) Value
AT2G44270.2 | Symbols: ROL5 | repressor of lrx1 | chr2:18297861... 1544 0.0
AT1G76170.1 | Symbols: | 2-thiocytidine tRNA biosynthesis prot... 1229 0.0
AT2G46730.1 | Symbols: | pseudogene, similar to 68 kDa protein... 95.3 1e-18
> AT2G44270.2 | Symbols: ROL5 | repressor of lrx1 | chr2:18297861-18300273
REVERSE LENGTH=1414
Length=1414
Score = 1544 bits (836), Expect = 0.0
Identities = 1045/1136 (92%), Gaps = 53/1136 (5%)
Strand=Plus/Plus
Query 1 TCCGCATGAGCTCCGGTGAAAAATGGAGGCCAAGAGCAAGAAAGCAGGAGCCTCTCGTCT 60
||||||||||||||||||||||||||||||||||| ||||||||||| |||||| |||||
Sbjct 99 TCCGCATGAGCTCCGGTGAAAAATGGAGGCCAAGAACAAGAAAGCAGTAGCCTCCCGTCT 158
Query 61 CTGCTGCTTATGCAACCTGAGACGTCCCGTTCTCAAAAGACCTAAAACCCTTCAACAG-A 119
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
Sbjct 159 CTGCTGCTTATGCAACCTGAGACGTCCCGTCCTCAAAAGACCTAAAACCCTTCAACAGCA 218
Query 120 TATGCA-G-AG-AG-TG-CT-T-CT---A-TG--AG-G--T--TTTT--GAGG------A 153
| || | | | | || | || | || || | | |||| |||| |
Sbjct 219 GAAGCTTGGAACACATTTCTATACTGTTAGTGTTAGAGAGTGCTTTTATGAGGTTTTTGA 278
Query 154 GGAG-A--TTCATCAAGTCATTGTTCAGAATCGTTTATTCAAATCCGGTGAACGTGTTGC 210
|||| | ||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 279 GGAGGAGATTCATCAAGTCATTGTTCAGAATCGTTTATTCAAATCTGGTGAACGTGTTGC 338
Query 211 TATAGGTGCCTCTGGTGGAAAAGATTCTACCGTTCTGGCATATGTGTTATCAGAACTAAA 270
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 339 TATAGGTGCCTCTGGTGGAAAAGATTCTACTGTTCTGGCATATGTGTTATCAGAACTAAA 398
Query 271 CAGACGCCACAATTACGGGCTAGACCTCTTTCTCTTGTCCATAGATGAAGGGATTACGGG 330
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 399 CAGACGCCACAATTATGGGCTAGACCTCTTTCTCTTGTCCATAGATGAAGGGATTACGGG 458
Query 331 TTATCGTGATGATTCTCTTGAGACTGTGAAACGGAACGAAGTCCAATATGGTTTGCCTCT 390
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 459 TTATCGTGATGATTCTCTTGAGACTGTTAAACGGAACGAAGTCCAATATGGTTTGCCTCT 518
Query 391 CCAA-ATTGTTTCATACAAAGATCTGTATGGATGGACAATGGACGAGATTGTGAAAATGA 449
|| ||||||||||| |||||||||||||||||||||||||| ||||||||||||||||
Sbjct 519 T-AAGATTGTTTCATATAAAGATCTGTATGGATGGACAATGGATGAGATTGTGAAAATGA 577
Query 450 TTGGTTTGAAGAACAATTGCACCTTTTGTGGTGTATTCCGTCGACAGGCACTTGATCGAG 509
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 578 TTGGTTTGAAGAACAATTGCACCTTTTGTGGTGTATTCCGTCGACAGGCACTTGACCGAG 637
Query 510 GAGCTGCCTTATTGAAAGTAGATAAGCTAGTCACTGGACATAATGCTGATGATATAGCAG 569
||||||| |||||||||||||| ||||||||||||||||||||||| |||||||||||||
Sbjct 638 GAGCTGCGTTATTGAAAGTAGAGAAGCTAGTCACTGGACATAATGCAGATGATATAGCAG 697
Query 570 AAACCGTTCTCTTGAACATATTGCGAGGGGATATTGCTAGATTAAGTCGGTGCACATCGA 629
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 698 AAACCGTTCTCTTGAACATATTGCGAGGGGATATTGCTAGATTAAGTAGGTGCACATCGA 757
Query 630 TTACTACTGGTGAAGATGGTCCCATTCCAAGATGTAAACCTTTCAAGTATACGTACGAAA 689
|||||||||||||||||||||||||||||||||||||||||||||| | | ||||
Sbjct 758 TTACTACTGGTGAAGATGGTCCCATTCCAAGATGTAAACCTTTCAACT-T---TACG--- 810
Query 690 AGGAGATTGTCATGTATGCTTATTTCAAGAAGCTCGATTACTTCTCCACCGAATGCATAT 749
| ||| |||||||||||||||| |||||||||||||| |||||||| |
Sbjct 811 ------T----ATG----CTTATTTCAAGAAGCTGGATTACTTCTCCACTGAATGCATTT 856
Query 750 ACTCTCCTAATGCATATCGTGGGTTTGCCCGTGAGTTCATCAAAGATTTGGAAAGAATAA 809
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 857 ACTCTCCTAATGCATATCGTGGGTTTGCCCGTGAGTTCATCAAAGATTTGGAAAGAATAA 916
Query 810 GGCCAAGGGCGATTCTGGACATCATAAAATCTGGTGAAGATTTTAGAATTGCGACAACCA 869
|||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||
Sbjct 917 GGCCAAGGGCGATTCTGGACATCATAAAGTCTGGTGAAGATTTTAGAATTGCAACAACCA 976
Query 870 CAAAGATGCCTGAGCAAGGGACGTGTGAGCGATGCGGGTATATTTCTAGCCAGAAATGGT 929
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 977 CAAAGATGCCTGAGCAAGGGACGTGTGAGCGATGCGGGTATATTTCTAGCCAGAAATGGT 1036
Query 930 GCAAAGCTTGTGTTTTGTTGGAAGGACTGAACCGTGGTTTGCCTAAGATGGGTATTGGAA 989
| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1037 GTAAAGCTTGTGTTTTGCTGGAAGGACTGAACCGTGGTTTGCCTAAGATGGGTATTGGAA 1096
Query 990 GACCGCGAGGCTTAAATAGCGACCATAACAAGGAAACAAAGAAGCCTGGATATGTTGCAA 1049
|||| |||||| ||||| | || ||||| |||||||||||||||||||||| ||| ||||
Sbjct 1097 GACCTCGAGGCGTAAATGGTGATCATAATAAGGAAACAAAGAAGCCTGGATCTGTAGCAA 1156
Query 1050 AATCTATAGAGAGCAAACAATGTGGATCTCTGGATTTCTAAAATTTTGAGaaaaaa 1105
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1157 AATCTATAGAGAGCAAACAATGTGGATCTCTGGATTTCTAAAATTTTGAGAAAAAA 1212
> AT1G76170.1 | Symbols: | 2-thiocytidine tRNA biosynthesis protein,
TtcA | chr1:28584039-28586225 REVERSE LENGTH=1139
Length=1139
Score = 1229 bits (665), Expect = 0.0
Identities = 879/983 (89%), Gaps = 12/983 (1%)
Strand=Plus/Plus
Query 126 GAGAGTGCTTCTATGAGGTTTTTGAGGAGGAGATTCATCAAGTCATTGTTCAGAATCGTT 185
||||||| |||||||||||||||||||| |||||||| |||||||||||| ||||||||
Sbjct 38 GAGAGTGTTTCTATGAGGTTTTTGAGGAAGAGATTCACCAAGTCATTGTTGGGAATCGTT 97
Query 186 TATTCAAATCCGGTGAACGTGTTGCTATAGGTGCCTCTGGTGGAAAAGATTCTACCGTTC 245
| || || | ||||||||| ||||||||||||||||| ||||||||||||||| | || |
Sbjct 98 TGTTTAAGTTCGGTGAACGAGTTGCTATAGGTGCCTCCGGTGGAAAAGATTCTTCAGTGC 157
Query 246 TGGCATATGTGTTATCAGAACTAAACAGACGCCACAATTACGGGCTAGACCTCTTTCTCT 305
||||||||||||||||||||||||||||||| |||| |||||| || || || ||||| |
Sbjct 158 TGGCATATGTGTTATCAGAACTAAACAGACGTCACAGTTACGGACTCGATCTTTTTCTTT 217
Query 306 TGTCCATAGATGAAGGGATTACGGGTTATCGTGATGATTCTCTTGAGACTGTGAAACGGA 365
|||| || ||||||||||| ||||||||||||||||||||||| |||||||| ||| |||
Sbjct 218 TGTCTATTGATGAAGGGATAACGGGTTATCGTGATGATTCTCTCGAGACTGTTAAAAGGA 277
Query 366 ACGAAGTCCAATATGGTTTGCCTCTCCAAATTGTTTCATACAAAGATCTGTATGGATGGA 425
||||||| |||||||| |||||||| || |||||||||||||||||||||||||||||||
Sbjct 278 ACGAAGTTCAATATGGATTGCCTCTTCAGATTGTTTCATACAAAGATCTGTATGGATGGA 337
Query 426 CAATGGACGAGATTGTGAAAATGATTGGTTTGAAGAACAATTGCACCTTTTGTGGTGTAT 485
||||||||||||||||||| ||||| ||||||||||||||||||||||| ||||||||||
Sbjct 338 CAATGGACGAGATTGTGAAGATGATCGGTTTGAAGAACAATTGCACCTTCTGTGGTGTAT 397
Query 486 TCCGTCGACAGGCACTTGATCGAGGAGCTGCCTTATTGAAAGTAGATAAGCTAGTCACTG 545
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 398 TCCGTCGACAGGCACTTGATCGAGGAGCTGCGTTATTGAAAGTAGATAAGCTAGTCACTG 457
Query 546 GACATAATGCTGATGATATAGCAGAAACCGTTCTCTTGAACATATTGCGAGGGGATATTG 605
|||||||||| ||||||||||| ||||| ||| |||| |||||| ||||||| |||||||
Sbjct 458 GACATAATGCAGATGATATAGCCGAAACAGTTGTCTTAAACATACTGCGAGGCGATATTG 517
Query 606 CTAGATTAAGTCGGTGCACATCGATTACTACTGGTGAAGATGGTCCCATTCCAAGATGTA 665
||||||| ||| |||||||||| || ||||| || ||||||||||| |||||||||||||
Sbjct 518 CTAGATTGAGTAGGTGCACATCAATCACTACAGGCGAAGATGGTCCAATTCCAAGATGTA 577
Query 666 AACCTTTCAAGTATACGTACGAAAAGGAGATTGTCATGTATGCTTATTTCAAGAAGCTCG 725
|||||||||| ||||| ||||| ||||||||||||||||||||||||||||||||||| |
Sbjct 578 AACCTTTCAAATATACATACGAGAAGGAGATTGTCATGTATGCTTATTTCAAGAAGCTGG 637
Query 726 ATTACTTCTCCACCGAATGCATATACTCTCCTAATGCATATCGTGGGTTTGCCCGTGAGT 785
| ||||||||||| |||||||||||||| |||||||| |||||||| || ||| ||||||
Sbjct 638 ACTACTTCTCCACTGAATGCATATACTCCCCTAATGCTTATCGTGGATTCGCCTGTGAGT 697
Query 786 TCATCAAAGATTTGGAAAGAATAAGGCCAAGGGCGATTCTGGACATCATAAAATCTGGTG 845
||||||| || ||||||||| ||||||||||||| |||||||| ||||| || || ||||
Sbjct 698 TCATCAATGACTTGGAAAGACTAAGGCCAAGGGCTATTCTGGATATCATCAAGTCAGGTG 757
Query 846 AAGATTTTAGAATTGCGACAACCAC-AAAGATGCCTGAGCAAGGGACGTGTGAGCGATGC 904
|||| || |||||||| |||||||| ||| ||||||||||||||||| |||||||||||
Sbjct 758 AAGACTTCAGAATTGCCACAACCACGAAA-ATGCCTGAGCAAGGGACTTGTGAGCGATGT 816
Query 905 GGGTATATTTCTAGCCAGAAATGGTGCAAAGCTTGTGTTTTGTTGGAAGGACTGAACCGT 964
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 817 GGGTATATTTCTAGCCAGAAATGGTGCAAAGCTTGTGTTTTGTTGGAAGGATTGAACCGT 876
Query 965 GGTTTGCCTAAGATGGGTATTGGAAGACCGCGAGG---CTTAAATAGCGACCATAACAAG 1021
||| ||||||||||||| ||||||||||| |||| | ||||| | || |||| |
Sbjct 877 GGTCTGCCTAAGATGGGCATTGGAAGACCAAGAGGAAACGTAAATGGTGATTATAA---G 933
Query 1022 GAAACAAAGAAGCCTGGATATGTTGCAAAATCTATAGAGAGCAAACAATGTGGATCTCTG 1081
|| | |||| || | ||| | ||||||| |||||||||||||||||||||||||||||
Sbjct 934 GACATAAAG--GC-TAGATCTACTGCAAAAACTATAGAGAGCAAACAATGTGGATCTCTG 990
Query 1082 GATTTCTAAAATTTTGAGaaaaa 1104
|||||||||| || ||||||||
Sbjct 991 GATTTCTAAA-TTAAGAGAAAAA 1012
> AT2G46730.1 | Symbols: | pseudogene, similar to 68 kDa protein,
blastp match of 68% identity and 4.7e-17 P-value to GP|7271113|emb|CAB81547.1||AJ276420
68 kDa protein {Cicer arietinum}
| chr2:19200860-19203138 FORWARD LENGTH=2279
Length=2279
Score = 95.3 bits (51), Expect = 1e-18
Identities = 55/57 (96%), Gaps = 0/57 (0%)
Strand=Plus/Plus
Query 646 TGGTCCCATTCCAAGATGTAAACCTTTCAAGTATACGTACGAAAAGGAGATTGTCAT 702
||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||
Sbjct 1166 TGGTCCCATTCCAAGATGTAAACCTTTCAAGCATACATACGAAAAGGAGATTGTCAT 1222
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57178420755
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5