BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg483556
Length=753
Score E
Sequences producing significant alignments: (Bits) Value
AT2G44300.1 | Symbols: | Bifunctional inhibitor/lipid-transfer... 996 0.0
AT2G44290.1 | Symbols: | Bifunctional inhibitor/lipid-transfer... 828 0.0
> AT2G44300.1 | Symbols: | Bifunctional inhibitor/lipid-transfer
protein/seed storage 2S albumin superfamily protein | chr2:18307309-18308349
REVERSE LENGTH=837
Length=837
Score = 996 bits (539), Expect = 0.0
Identities = 675/740 (91%), Gaps = 12/740 (2%)
Strand=Plus/Plus
Query 18 AAAACAAAATGGGA-TCATGGAGGATTAATCTAATGGCGACAGCAATAGCTTTAATCATG 76
|||||||||| ||| ||| ||| |||||| |||||||||||||||||||||||||| |
Sbjct 56 AAAACAAAAT-GGAGTCACGGAAGATTAACCTAATGGCGACAGCAATAGCTTTAAT-A-- 111
Query 77 GTGGTGGCTATGGTGGTGG-ATGCCGGAGATGATAAGGCGAAAGACAAGGAGGAGTGTAC 135
||||||||||||||||||| | || | ||||||||| ||||||||||||||||||||||
Sbjct 112 GTGGTGGCTATGGTGGTGGCA-GCTGCTGATGATAAGACGAAAGACAAGGAGGAGTGTAC 170
Query 136 GGAGCAGCTGGTTGGTATGGCCACGTGTCTTCCTTACGTGCAAGGACAGGCAAAATCTCC 195
|||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 171 GGAGCAGCTGGTCGGTATGGCCACGTGTCTTCCTTACGTGCAAGGACAAGCAAAATCTCC 230
Query 196 AACGCCGGACTGTTGCTCCGGCCTCAAACAAGTTCTTAATTCCAACAAGAAGTGTCTTTG 255
||||| |||||||||||||| |||||||||||||||||||| |||||||||||||||||
Sbjct 231 GACGCCAGACTGTTGCTCCGGTCTCAAACAAGTTCTTAATTCAAACAAGAAGTGTCTTTG 290
Query 256 TGTGATCATCCAAGATAGGAATGATCCTGATTTGGGTCTCCAGATCAACGTCTCTCTAGC 315
||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 291 TGTGATCATTCAAGACAGGAATGATCCTGATTTGGGTCTCCAGATCAACGTCTCTCTAGC 350
Query 316 TCTTGCTCTTCCTTCTGTTTGTCACGCCACTGCCGACATCACTAAGTGTCCTGCTTTGCT 375
||| || ||||||||||||||||||||| |||| ||| ||||||| || |||||||||||
Sbjct 351 TCTCGCACTTCCTTCTGTTTGTCACGCCGCTGCTGACGTCACTAAATGCCCTGCTTTGCT 410
Query 376 TCACTTGGACCCAAATTCTCCGGATGCCCAAGTCTTCTATCAGCTAGCTAAAGGTTCAAA 435
||||||||| || |||||||| ||||||||||||||||| |||||||||||||||| |||
Sbjct 411 TCACTTGGATCCGAATTCTCCAGATGCCCAAGTCTTCTACCAGCTAGCTAAAGGTTTAAA 470
Query 436 CAAAACCAGCCCAGCCTCTGCTCCCACTGGCTTGGCCTCTGGGCCCACCAGCATGTCTCC 495
||||||| |||||||||||||||||||||||| | || |||| || | ||||| |||||
Sbjct 471 CAAAACCGGCCCAGCCTCTGCTCCCACTGGCTCGTCCCCTGGACCTATAAGCATTTCTCC 530
Query 496 GACCGCAGGATCCGATGATGGTAACAACAGTGGTCGAACAACCTCCGTGCCAGGCAGGAA 555
||| |||||||||||||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct 531 GACTTCAGGATCCGATGATGGTAACAACAGTGGTCGAACGACCTCTGTGCCAGGCAGGAA 590
Query 556 CAACGCTCAAAGCTTCTATAAACAATGGCTAGGGCTCGAAGTTGTTGT-CCATTTCTTCG 614
| |||||||||||||||||||||||||||| |||||||||||||| || |||||||||||
Sbjct 591 CCACGCTCAAAGCTTCTATAAACAATGGCTGGGGCTCGAAGTTGT-GTTCCATTTCTTCG 649
Query 615 TAATTTTTTATATTTTCATCCTCGTATAGATAGATAATAATAACGAAAAGC-GAAAAGTT 673
|||||||||||||||||||||||||||||||| ||||| |||||||||| | ||||||
Sbjct 650 TAATTTTTTATATTTTCATCCTCGTATAGATAAATAATGATAACGAAAA-CTGAAAAGCA 708
Query 674 TGTAACGTTGATTTTGTGAAATTGCGGTGACGCTGAGTTTTGCAGTTACTGTTTCGATTA 733
||| | ||||||| ||||||||||||||||||||| ||||||||||||||||| ||||
Sbjct 709 TGTGATGTTGATTA-GTGAAATTGCGGTGACGCTGATTTTTGCAGTTACTGTTTTGATTG 767
Query 734 GTATATTTAATTCTAGTTCG 753
|| |||||||||||||||||
Sbjct 768 GTGTATTTAATTCTAGTTCG 787
> AT2G44290.1 | Symbols: | Bifunctional inhibitor/lipid-transfer
protein/seed storage 2S albumin superfamily protein | chr2:18305201-18306251
REVERSE LENGTH=884
Length=884
Score = 828 bits (448), Expect = 0.0
Identities = 583/646 (90%), Gaps = 17/646 (3%)
Strand=Plus/Plus
Query 10 AAATCACAA-AAACAAAATGGGA-TCATGGAGGATTAATCTAATGGCGACAGCAATAGCT 67
|||||| || ||||||||| ||| ||| ||| |||||| ||||||||||||||||||||
Sbjct 33 AAATCAGAACAAACAAAAT-GGAGTCACGGAAGATTAAAGTAATGGCGACAGCAATAGCT 91
Query 68 TTAATCATGGTGGTGGCTATGGTGGTGGAT---GCCGGAGATGAT-AAGGCGAAAGACAA 123
||||| | |||||||||||||||||||| ||||||| |||| |||| |||||||||
Sbjct 92 TTAAT-A--ATGGTGGCTATGGTGGTGGATGCCGCCGGAGCTGATAAAGG-GAAAGACAA 147
Query 124 GGAGGAGTGTACGGAGCAGCTGGTTGGTATGGCCACGTGTCTTCCTTACGTGCAAGGACA 183
||| |||||||||| ||||||||| ||||||||||| ||||||||||||||||||||| |
Sbjct 148 GGAAGAGTGTACGGCGCAGCTGGTCGGTATGGCCACATGTCTTCCTTACGTGCAAGGAAA 207
Query 184 GGCAAAATCTCCAACGCCGGACTGTTGCTCCGGCCTCAAACAAGTTCTTAATTCCAACAA 243
|||||||||||| ||||| ||||||||||||||||||||||||||| |||||||| |||
Sbjct 208 GGCAAAATCTCCGACGCCAGACTGTTGCTCCGGCCTCAAACAAGTTATTAATTCCGACAT 267
Query 244 GAAGTGTCTTTGTGTGATCATCCAAGATAGGAATGATCCTGATTTGGGTCTCCAGATCAA 303
||||||||||||| ||||||||||||| ||||||||||||||||||||||||||| ||||
Sbjct 268 GAAGTGTCTTTGTATGATCATCCAAGAGAGGAATGATCCTGATTTGGGTCTCCAGGTCAA 327
Query 304 CGTCTCTCTAGCTCTTGCTCTTCCTTCTGTTTGTCACGCCACTGCCGACATCACTAAGTG 363
||||||||| ||||| ||||||||||||||||| ||||||||||| ||||||||||||||
Sbjct 328 CGTCTCTCTCGCTCTCGCTCTTCCTTCTGTTTGCCACGCCACTGCTGACATCACTAAGTG 387
Query 364 TCCTGCTTTGCTTCACTTGGACCCAAATTCTCCGGATGCCCAAGTCTTCTATCAGCTAGC 423
|||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 388 CCCTGCTTTGCTTCATTTGGACCCAAATTCTCCGGATGCCCAAGTGTTCTATCAGCTAGC 447
Query 424 TAAAGGTTC-AAACAAAACCAG-CCCAGCCTCTGCTCCCACTGGCTTGGCCTCTGGGCCC 481
|||||| || ||| ||| ||| | ||||||||||||||||||||| |||||||| ||||
Sbjct 448 TAAAGG-TCTGAACGAAA-CAGTCTCAGCCTCTGCTCCCACTGGCTCGGCCTCTGAGCCC 505
Query 482 ACCAGCATGTCTCCGACCGCAGGATCCGA-TGATGGTAACAACAGTGGTCGAACAACCTC 540
|| || |||||| ||||| |||||||| | || |||||||||||||||||| || |||||
Sbjct 506 ACTAGTATGTCTTCGACCCCAGGATCC-AGTGCTGGTAACAACAGTGGTCGGACGACCTC 564
Query 541 CGTGCCAGGCAGGAACAACGCTCAAAGCTTCTATAAACAATGGCTAGGGCTCGAAGTTGT 600
|||||||||| |||| ||||||||||||||| ||||||||||||||||||||||||||
Sbjct 565 TGTGCCAGGCACGAACCACGCTCAAAGCTTCTCCAAACAATGGCTAGGGCTCGAAGTTGT 624
Query 601 TGTCCATTTCTTCGTAATTTTTTATATTTTCATCCTCGTATAGATA 646
|| |||||||||||||||||||||||||||||||||||| ||||||
Sbjct 625 TGCCCATTTCTTCGTAATTTTTTATATTTTCATCCTCGTTTAGATA 670
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36570459016
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5