BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg483558
Length=556
Score E
Sequences producing significant alignments: (Bits) Value
AT2G44330.1 | Symbols: | RING/U-box superfamily protein | chr2... 494 5e-139
> AT2G44330.1 | Symbols: | RING/U-box superfamily protein | chr2:18310586-18311185
FORWARD LENGTH=600
Length=600
Score = 494 bits (267), Expect = 5e-139
Identities = 350/388 (90%), Gaps = 14/388 (4%)
Strand=Plus/Plus
Query 172 TTCGAAGACGACGAGGAATCTCTA-TTTCTCGATTCCATGGAATCTCTTCCGACCGTTGA 230
||||||||||| |||||||||| | ||||||||| |||||||||||||||||||| || |
Sbjct 210 TTCGAAGACGATGAGGAATCTC-AGTTTCTCGATCCCATGGAATCTCTTCCGACCATTAA 268
Query 231 GATCTCATCTTCAATGTTGTCTTGCGCTTCCTCAGACGATTCTAATTTACCATGCGCCAT 290
||||||||||||||||||||||| ||||||||||||||||||| ||||||||| |||||
Sbjct 269 GATCTCATCTTCAATGTTGTCTTCCGCTTCCTCAGACGATTCTGCTTTACCATGTGCCAT 328
Query 291 TTGTAGAGAAGATTTCGTGGTTGGAGAATCTGCTAGGAAATTGCCATGCAACCATTTATA 350
||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 329 TTGCAGAGAAGATTTCGTGGTTGGAGAATCTGCTAGGAGATTGCCATGCAACCATTTATA 388
Query 351 CCATAATGATTTGCATTATTCCTTGGCTCACAAGTCATAACTCGTGCCCTCTCTGTCGAT 410
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 389 CCATAATGA-TTGCATTATTCCTTGGCTCACAAGTCATAACTCGTGCCCTCTCTGTCGAG 447
Query 411 TTGAGCTCCCAGTTGCATTTAGTGGAGACGACAGTGGTCTG-ACCATGTGGTTTGATGCA 469
|||||||||| ||||||| ||||| |||||| ||||||||| || ||||||||||||||
Sbjct 448 TTGAGCTCCCGGTTGCATCTAGTGAAGACGATAGTGGTCTGGAC-ATGTGGTTTGATGCT 506
Query 470 TTGACCCTAGAGGACGACTTGCGTCTTGCGGGAAGATA-CGGTAGTCACTCTCGCTTTGT 528
|||| |||||||||||||||| | | | |||| | ||| |||||| |||| ||||
Sbjct 507 TTGAACCTAGAGGACGACTTG-GA---G-G--AAGA-AGCGGGAGTCACGCTCGATTTGG 558
Query 529 ACCAAAGTTTAGACGGCTAAAATTGTAG 556
| |||||||||||||||||||||| |||
Sbjct 559 AGCAAAGTTTAGACGGCTAAAATTCTAG 586
Score = 217 bits (117), Expect = 1e-55
Identities = 146/159 (92%), Gaps = 6/159 (4%)
Strand=Plus/Plus
Query 1 CTTCTAAATTTCCTCAACCACC-A--A-CTTCTCAATGTCGTCCTCCTCTACCCAATACC 56
|||||||||||||||||||||| | | |||||||||||||||||||||||||||| |||
Sbjct 1 CTTCTAAATTTCCTCAACCACCAACCACCTTCTCAATGTCGTCCTCCTCTACCCAAAACC 60
Query 57 AACTGGAGATGCGGAATTACACGTGTCCAGAATGTAACATAATG-CTTAGGGTTCTCTCA 115
|| ||||||||||| ||||||||||||| ||||||||||| | | |||||||||||||||
Sbjct 61 AATTGGAGATGCGGGATTACACGTGTCCGGAATGTAACAT-AGGTCTTAGGGTTCTCTCA 119
Query 116 TCGCCTTCTGCTTCTCCTCCATACTGTCCTCTATGCAAT 154
| |||||| ||||||||||||||||||||||||||||||
Sbjct 120 TTGCCTTCCGCTTCTCCTCCATACTGTCCTCTATGCAAT 158
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 26674332057
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5