BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg483559

Length=507
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G44340.1 | Symbols:  | VQ motif-containing protein | chr2:18...   793    0.0  


> AT2G44340.1 | Symbols:  | VQ motif-containing protein | chr2:18314279-18314845 
FORWARD LENGTH=567
Length=567

 Score =  793 bits (429),  Expect = 0.0
 Identities = 482/508 (95%), Gaps = 2/508 (0%)
 Strand=Plus/Plus

Query  1    ATGGAGATTACTCAATATCAAAGTTTTAATGAAGGTTCGAGTTCTAGGGTTTCCATGAAC  60
            ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct  1    ATGGAGATTACTCAATATCAAAGTTTTCATGAAGGTTCGAGTTCTAGGGTTTCCATGAAC  60

Query  61   AAGAATTCACAAGTAATATCCAAGATCAAACCCAAGATTCGCATAATCCATATATTCGCA  120
            | |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct  61   AGGAATTCACAAGTAATATCCAAGATCAAACCCAAGATTCGCATAATCCATATATTTGCA  120

Query  121  CCGGAGGTCATCAAGACCGACGTCAAGAACTTCCGTTCACTCGTCCAGAGTCTAACCGGG  180
            |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct  121  CCGGAGGTCATCAAGACCGACGTCAAGAACTTTCGTTCACTCGTCCAGAGTCTAACCGGG  180

Query  181  AAACCGGCACCGGGAGAGGCCAAAACCGGTAAAAAGAGAGCCAAATCGAGAATTCCGACG  240
            ||||||||||||||||| ||||||||||||||||||||||||||||| |||||| |||| 
Sbjct  181  AAACCGGCACCGGGAGAAGCCAAAACCGGTAAAAAGAGAGCCAAATCAAGAATTACGAC-  239

Query  241  T-CCCAAGAACCGGTTGGCGAAAATCATCAGCCGGTCAACAGGCTTTCGGGTTTCACCGG  299
            | |||||||||||||| ||||  |||||||||||||||||||||||||||||||||||||
Sbjct  240  TCCCCAAGAACCGGTTTGCGATGATCATCAGCCGGTCAACAGGCTTTCGGGTTTCACCGG  299

Query  300  TTTACTAGCAAACGGAGGAAACCATCAGGTGAAAGAAGAATGGGGATCAGGTGATCAGAG  359
            |||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||
Sbjct  300  TTTACTAGCAAACGGAGGAAACCACCAGGTGAAAGAAGAGTGGGGATCAGGTGATCAGAG  359

Query  360  TACTTCAAACACAAGCACTTACTTTGATCTAGAAGGTTTGATCCAAGATGTCGGAGAAGA  419
            |||||| ||||||| ||| |||||||||||||||||||| || |||||||||||||||||
Sbjct  360  TACTTCGAACACAAACACGTACTTTGATCTAGAAGGTTTAATTCAAGATGTCGGAGAAGA  419

Query  420  TTACTTCACCTCCTTTCCCATGAGATCCTCTTCTTCTTCACAAGTTGAAGGTTTCATCTT  479
            ||||||| | || |||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct  420  TTACTTCTCTTCGTTTCCCATGAGATCCTCTTCTTCTTCACAAGTCGAAGGTTTCATCTT  479

Query  480  CAACAACAACACCAACACCAACACCAAC  507
            ||||||||||| ||||| ||||| ||||
Sbjct  480  CAACAACAACAACAACAACAACAACAAC  507



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 24212858854


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5