BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg483560
Length=1779
Score E
Sequences producing significant alignments: (Bits) Value
AT2G44350.2 | Symbols: ATCS, CSY4 | Citrate synthase family pro... 2832 0.0
AT3G60100.1 | Symbols: CSY5 | citrate synthase 5 | chr3:2219273... 1282 0.0
> AT2G44350.2 | Symbols: ATCS, CSY4 | Citrate synthase family protein
| chr2:18316278-18320789 FORWARD LENGTH=1822
Length=1822
Score = 2832 bits (1533), Expect = 0.0
Identities = 1712/1792 (96%), Gaps = 37/1792 (2%)
Strand=Plus/Plus
Query 20 ACACGCAGACGCAGCtttttgttttttttttCAACAATCGC---tttttttCTCGATCTC 76
||||||||||||||||||| | | ||||||||||||||||| ||||||||||||||||
Sbjct 36 ACACGCAGACGCAGCTTTTAG-TATTTTTTTCAACAATCGCTTTTTTTTTTCTCGATCTC 94
Query 77 CGTCAAGCTCCCGAATCTCTGGTTTTGAGTTTTGGAGAATGGTGTTTTTCCGCAGCGTAT 136
||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 95 CGTGAAGCTCTCGAATCTCTGGTTTTGAGTTTTGGAGAATGGTGTTTTTCCGCAGCGTAT 154
Query 137 CGGCCTTTACTAGGCTGAGGTCTCGCGTCCAGGGGCAACAATCTTCGCTCAGCAATTCGG 196
|||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||| |
Sbjct 155 CGGCCTTTACTAGGCTGAGGTCTCGCGTCCAGGGCCAACAATCTTCACTCAGCAATTCTG 214
Query 197 TCAGATGGATTCAGATGCAGAGCTCTACCGACCTGGACCTGAAGTCGCAGCTGCAAGAGT 256
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 215 TCAGATGGATTCAGATGCAGAGCTCTACCGACCTGGACCTGAAGTCGCAGCTGCAAGAGT 274
Query 257 TAATTCCGGAACAGCAGGACCGTCTGAAGAAACTGAAGTCAGAACATGGGAAGGTCCAAC 316
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 275 TAATTCCGGAACAGCAGGACCGTCTGAAGAAACTGAAGTCAGAACATGGGAAGGTCCAAC 334
Query 317 TGGGAAACATCACTGTTGATATGGTTATCGGTGGGATGAGAGGGATGACTGGATTGCTTT 376
|||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct 335 TGGGAAACATCACTGTTGATATGGTTATTGGTGGAATGAGAGGGATGACTGGATTGCTTT 394
Query 377 GGGAAACCTCATTGCTTGACCCGGAAGAGGGTATTCGCTTTAGGGGCTTGTCAATTCCTG 436
|||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||
Sbjct 395 GGGAAACCTCATTGCTTGACCCGGAAGAGGGTATTCGCTTTAGGGGATTGTCGATTCCTG 454
Query 437 AGTGCCAAAAAGTATTACCTACTGCCCAGTCTGGAGCAGAACCATTACCGGAGGGTCTGT 496
||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||| |
Sbjct 455 AGTGCCAGAAAGTATTACCTACTGCCCAGTCTGGAGCTGAACCATTACCGGAGGGTCTTT 514
Query 497 TGTGGCTTCTCTTAACTGGAAAGGTACCTAGCAAAGAGCAAGTTGAAGCACTGTCGAAAG 556
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 515 TGTGGCTTCTCTTAACTGGAAAGGTACCTAGCAAAGAGCAAGTTGAAGCACTGTCGAAAG 574
Query 557 ACTTGGC-AAGCCGTGCTGCTGTGCCAGATTATGTGTACAATGCCATCGATGCTCTGCCT 615
||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 575 ACTTGGCGAA-CCGTGCTGCTGTGCCAGATTATGTGTACAATGCCATCGATGCTCTGCCT 633
Query 616 TCCACAGCTCATCCAATGACTCAATTTGCTAGCGGTGTTATGGCCCTCCAGGTGCAAAGT 675
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 634 TCCACAGCTCATCCAATGACTCAATTTGCTAGCGGTGTTATGGCCCTCCAGGTGCAAAGT 693
Query 676 GAGTTCCAAAAGGCATATGAGAATGGAATTCATAAGTCAAAGTTCTGGGAGCCAACATAT 735
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 694 GAGTTTCAAAAGGCATATGAGAATGGAATTCATAAGTCAAAGTTCTGGGAGCCAACATAT 753
Query 736 GAGGATTGCCTCAACCTGATTGCTCGTGTTCCTGTTGTAGCTGCATATGTTTATCGAAGG 795
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 754 GAGGATTGCCTCAACCTGATTGCTCGTGTTCCTGTTGTAGCTGCATATGTTTATCGAAGG 813
Query 796 ATGTATAAGAATGGTGATTCCATTCCCTCAGATAAATCTTTGGATTATGGTGCAAATTTT 855
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 814 ATGTATAAGAATGGTGATTCCATTCCCTCAGATAAATCTTTGGATTATGGTGCAAATTTT 873
Query 856 TCCCACATGTTGGGATTTGATGATGAAAAGATGAAAGAGCTTATGAGGCTTTACATCACT 915
|||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||
Sbjct 874 TCCCACATGTTGGGATTTGATGATGAAAAGGTGAAAGAGCTCATGAGGCTTTACATCACC 933
Query 916 ATCCACAGTGATCATGAAGGTGGAAATGTTAGTGCTCACACTGGTCACCTGGTCGGTAGT 975
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 934 ATCCACAGTGATCATGAAGGTGGAAATGTTAGTGCTCACACTGGTCACCTGGTTGGTAGT 993
Query 976 GCACTTTCAGATCCATATCTGTCATTTGCAGCTGCATTAAATGGTTTAGCTGGGCCACTC 1035
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 994 GCACTTTCAGACCCATATCTGTCATTTGCAGCTGCATTAAATGGTTTAGCTGGGCCACTC 1053
Query 1036 CATGGTTTGGCTAATCAGGAAGTTTTGCTTTGGATCAAA-CAAGTTGTCGAGGAATGTGG 1094
||||||||||||||||||||||||||||||||||||||| | ||| || |||||||||||
Sbjct 1054 CATGGTTTGGCTAATCAGGAAGTTTTGCTTTGGATCAAATC-AGTCGTAGAGGAATGTGG 1112
Query 1095 AGAAGACGTATCGAAAGAACAGTTGAAAGAATATGTTCAGAAAACATTAAACAGTGGCAA 1154
|||||| |||| |||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1113 AGAAGATATATCAAAAGAACAGTTGAAAGAATATGTTTGGAAAACATTAAACAGTGGCAA 1172
Query 1155 GGTTGTTCCGGGATATGGACACGGTGTTCTGCGCAATACTGATCCAAGATATGTATGCCA 1214
|||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1173 GGTTATTCCGGGATATGGTCACGGTGTTCTGCGCAATACTGATCCAAGATATGTATGCCA 1232
Query 1215 AAGAGAATTTGCCTTGAAGCATCTACCTGATGACCCTCTTTTCCAGCTGGTGTCAAAGCT 1274
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1233 AAGAGAATTTGCCTTGAAGCATCTACCTGACGACCCTCTTTTCCAGCTGGTGTCAAAGCT 1292
Query 1275 TTATGAAGTTGTGCCTCCTGTTCTCACTGAGCTTGGAAAGGTGAAGAACCCGTGGCCAAA 1334
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1293 TTATGAAGTTGTGCCTCCTGTTCTCACTGAGCTTGGAAAGGTGAAGAACCCGTGGCCAAA 1352
Query 1335 TGTTGATGCTCACAGTGGGGTCTTGCTGAACCACTATGGTCTAACCGAAGCAAGGTACTA 1394
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1353 TGTTGATGCTCACAGTGGGGTCTTGCTGAACCACTATGGTCTAACCGAAGCAAGGTACTA 1412
Query 1395 CACCGTGCTCTTTGGTGTTTCAAGGAGTCTTGGCATCTGCTCTCAGCTAATATGGGACCG 1454
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1413 CACCGTGCTCTTTGGTGTTTCAAGGAGTCTTGGCATCTGCTCTCAGCTTATATGGGACCG 1472
Query 1455 AGCTCTTGGACTTGCACTTGAGAGGCCAAAGAGTGTTACAATGGACTGGCTTGAAGCCCA 1514
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1473 AGCTCTTGGACTTGCACTTGAGAGGCCAAAGAGTGTTACCATGGACTGGCTTGAAGCCCA 1532
Query 1515 TTGTAAGAAAGCTTCATCTGCTTAAG-C-C-ACC-A--CCT-------C----TC----G 1553
|||||||||||||||||||||||||| | | ||| | ||| | || |
Sbjct 1533 TTGTAAGAAAGCTTCATCTGCTTAAGTCACCACCGAGTCCTGAGTTGTCGCACTCTCTCG 1592
Query 1554 TGTTTAAACAAAAGCCATTCTCTTCCACACTGAATAGCCtttttt-t----ACCTTCTAT 1608
||||| |||||||| ||||||||||||||||| ||||| |||||| | |||||||||
Sbjct 1593 TGTTTCAACAAAAGTCATTCTCTTCCACACTGGATAGCTTTTTTTGTTTTTACCTTCTAT 1652
Query 1609 TTGACAGAAGAAACATTTGTTCATGTAGAAATTGTTCCTGAGAAACACATGCTTGGTGCA 1668
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1653 T-GACAGAAGAAACATTTGTTCATGTAGAAATTGTTCCTGAGAAACACATGCTTGGTGCA 1711
Query 1669 AATTTGCATT-CCGGGAAAACTCGTGATAATAAATAAACAGTTGTATTCAATTTGCATAA 1727
|||||||||| |||||||| |||||||||||||||||||||||||||||| ||||| |||
Sbjct 1712 AATTTGCATTTCCGGGAAA-CTCGTGATAATAAATAAACAGTTGTATTCAGTTTGCGTAA 1770
Query 1728 ACATCCAACATCAATATCACTCATGAATTTAAGCTTTTCTTAGTTTTGATAT 1779
| ||| ||||||||||||||||||||||| |||||| |||| ||||||||||
Sbjct 1771 AAATCAAACATCAATATCACTCATGAATTAAAGCTTATCTTGGTTTTGATAT 1822
> AT3G60100.1 | Symbols: CSY5 | citrate synthase 5 | chr3:22192730-22196447
FORWARD LENGTH=1754
Length=1754
Score = 1282 bits (694), Expect = 0.0
Identities = 1201/1435 (84%), Gaps = 77/1435 (5%)
Strand=Plus/Plus
Query 98 GTTTTGAGTTTTG-GAGAATGGTGTTTTTCCGCAGCGTATCGGCC-TTTACTAGGCTGA- 154
||| |||| |||| |||||||||||||| ||||||||||| ||| ||| | || || |
Sbjct 141 GTTGTGAGGTTTGAAAGAATGGTGTTTTTTCGCAGCGTATCAGCCATTT-CAAGACT-AC 198
Query 155 GGTCTCGCGTCCAGGGGCAACAATCTTCGCTCAGCAATTCGGTCAGATGGATTCAGATGC 214
||||||| | || | ||||||||| || || || || || ||||||||| | | |
Sbjct 199 GGTCTCGAG--CA-GTGCAACAATCCTCACTTAGTAACTCCGTCAGATGG---C---T-C 248
Query 215 AGAGCTCTACCGACCTGGACCTGAAGTCGCAGCTGCAAGAGTTAATTCCGGAACAGCAGG 274
| |||| | || ||||| ||||||||||| |||||||| | ||||| ||||| ||||
Sbjct 249 -CA-CTCTTCTGAATTGGACTTGAAGTCGCAGATGCAAGAGATCATTCCAGAACAACAGG 306
Query 275 ACCGTCTGAAGAAACTGAAGTCAGAACATGGGAAGG-TCCAACTGGGAAACATCACTGTT 333
||||| ||||||||||||| |||||||| || |||| ||| | |||| |||||||| |||
Sbjct 307 ACCGTTTGAAGAAACTGAAATCAGAACAAGGAAAGGTTCC-AGTGGGGAACATCACCGTT 365
Query 334 GATATGGTTA-TCGGTGGGATGAGAGGGATGACTGGATTGCTTTGGGAAACCTCATTGCT 392
||||||| || | ||||| |||||||||||||||||||| || |||||||||||||||||
Sbjct 366 GATATGG-TACTTGGTGGAATGAGAGGGATGACTGGATTACTCTGGGAAACCTCATTGCT 424
Query 393 TGACCCGGAAGAGGGTATTCGCTTTAGGGGCTTGTCAATTCCTGAGTGCCA-AAAAGTAT 451
||| | || ||||| || || ||||| ||| |||| |||||||| || || |||| |||
Sbjct 425 TGATGCAGATGAGGGAATACGGTTTAGAGGCATGTCGATTCCTGAATGTCAGAAAA-TAT 483
Query 452 TACCTACTGCCCAGTCTGGAGCAGAACCATTACCGGAGGGTCTGT-TGTGGCTTCTCTTA 510
||||| | || ||||||||| ||| || || || ||| |||| | |||||||||| |||
Sbjct 484 TACCTTCAGCTGAGTCTGGAGAAGAGCCCTTGCCTGAGAGTCT-TCTGTGGCTTCTATTA 542
Query 511 ACTGGAAAGGTACCTAGC-AAAGAGCAAGTTGAA-GCACTGTCGAA-AGACTTGGC-AAG 566
||||||||||| || | | |||||||||| | || || |||| || ||| ||||| |
Sbjct 543 ACTGGAAAGGTGCC-AACTAAAGAGCAAGCT-AATGCTTTGTC-AACAGAGTTGGCTCA- 598
Query 567 CCGTGCTGCTGTGCCAGATTATGTGTACAATGCCATCGATGCTCTGCCTTCCACAGCTCA 626
||||| |||||||| | | | | || |||||| ||||||| ||||||||
Sbjct 599 TCGTGCGGCTGTGCC-----A---G--C--T---ATAGATGCTTTGCCTTCAACAGCTCA 643
Query 627 TCCAATGACTCAATTTGCTAGCGGTGTTATGGCCCTCCAGGTGCAAAGTGAGTTCCAAAA 686
||||||||||||||||||||| |||||||||||||| ||||| ||||||||||| |||||
Sbjct 644 TCCAATGACTCAATTTGCTAGTGGTGTTATGGCCCTTCAGGTTCAAAGTGAGTTTCAAAA 703
Query 687 GGCATATGAG-AATG-GA-A-TTCATAAGTCAAAGTTCTGGGAGCCAACATAT-GAGGAT 741
||| |||||| | | || | ||| ||||||||||| |||||| ||||| | | || ||
Sbjct 704 GGCGTATGAGCAGGGTGATATTTC-TAAGTCAAAGTACTGGGAACCAACCT-TCGAAGA- 760
Query 742 TG-CCTCAACCTGATTGCTCGTGTTCCTGTTGTAGCTGCATATGTTTATCGAAGGATGTA 800
|| ||| ||| |||||||||||||||||||||||||| |||| |||||||| ||||||||
Sbjct 761 TGCCCTAAACTTGATTGCTCGTGTTCCTGTTGTAGCTTCATACGTTTATCGGAGGATGTA 820
Query 801 TAAGAATGGT-G-ATTCCATTCCCTCAGATAAATCTTTGGATTATGGTGCAAATTTTTCC 858
||| ||||| | | | |||||| | |||| | ||||||||||||||||||||||||||
Sbjct 821 CAAGGATGGTAGCA-T-CATTCCATTAGATGATTCTTTGGATTATGGTGCAAATTTTTCA 878
Query 859 CACATGTTGGGATTTGATGA-TGAAAAGATGAAAGAGCTTATGAGGCTTTACATCACTAT 917
|||||| ||||||||||| | | ||||||||||||| ||||||||||| |||||||
Sbjct 879 CACATGCTGGGATTTGAT-AGTCCTCAGATGAAAGAGCTCATGAGGCTTTATGTCACTAT 937
Query 918 CCACAGTGATCATGAAGGTGGAAATGTTAGTGCTCACACTGGTCACCTGGTCGGTAGTGC 977
||||||||||||||||||||||||||||||||||||| ||||||||||||| || |||||
Sbjct 938 CCACAGTGATCATGAAGGTGGAAATGTTAGTGCTCACGCTGGTCACCTGGTTGGGAGTGC 997
Query 978 ACTTTCAGATCCATATCTGTCATTTGCAGCTGCATTAAATGGTTTAGCTGGGCCACTCCA 1037
|||||||||||||||||| |||||||| |||||||| |||||||||||||||||||||||
Sbjct 998 ACTTTCAGATCCATATCTTTCATTTGCTGCTGCATTGAATGGTTTAGCTGGGCCACTCCA 1057
Query 1038 TGGTTTGGCTAATCAGGAAGTTTTGCTTTGGATCAAACAAGTTGTCGAGGAATGTGGAGA 1097
||||||||||||||||||||||||||| ||||||||| |||||| ||||||||||||||
Sbjct 1058 TGGTTTGGCTAATCAGGAAGTTTTGCTGTGGATCAAATTAGTTGTTGAGGAATGTGGAGA 1117
Query 1098 AGACGTAT--CGAAAG-AACAGTTGAAAGAATATGTTCAG-AAAACATTAAACAGTGGCA 1153
| | |||| | |||| ||||| | ||||| ||||| | | ||||| |||||||||||||
Sbjct 1118 A-A-GTATATC-AAAGGAACAGCTAAAAGATTATGT-CTGGAAAACGTTAAACAGTGGCA 1173
Query 1154 AGGTTGTTCCGGGATATGGACACGGTGTTCTGCGCAATACTGATCCAAGATATGTATGCC 1213
|||||||||| |||||||| || |||||| |||| || || |||||||||||| ||||||
Sbjct 1174 AGGTTGTTCCAGGATATGGCCATGGTGTTTTGCGTAAAACGGATCCAAGATATATATGCC 1233
Query 1214 AAAGAGAATTTGCCTTGAAGCATCTACCTGATGACCCTCTTTTCCAGCTGGTGTCAAAGC 1273
||||||| |||||||||||||||||||||||||| |||||||| |||||||| ||||| |
Sbjct 1234 AAAGAGAGTTTGCCTTGAAGCATCTACCTGATGATCCTCTTTTTCAGCTGGTCTCAAAAC 1293
Query 1274 TTTATGAAGTTGTGCCTCCTGTTCTCACTGAGCTTGGAAAGGTGAAGAACCCGTGGCCAA 1333
|||||||||| ||||||||| |||| || ||||| |||||||| |||||||||||||| |
Sbjct 1294 TTTATGAAGTGGTGCCTCCTATTCTAACCGAGCTGGGAAAGGTCAAGAACCCGTGGCCTA 1353
Query 1334 ATGTTGATGCTCACAGTGGGGT-CTTGCTGAACCACTATGGTCTAACCGAAGCAAGGTAC 1392
| ||||||||||| || || || ||| |||||| |||||||||||||||||||||| |||
Sbjct 1354 ACGTTGATGCTCATAGCGGAGTGCTT-CTGAACTACTATGGTCTAACCGAAGCAAGATAC 1412
Query 1393 TACACCGTGCTCTTTGGTGTTTCAAGGAGTCTTGGCATCTGCTCTCAGCTAATATGGGAC 1452
||||| ||||| ||||| || ||||| |||||||| |||||||| ||||| |||||||||
Sbjct 1413 TACACGGTGCTTTTTGGCGTCTCAAGAAGTCTTGGAATCTGCTCGCAGCTGATATGGGAC 1472
Query 1453 CGAGCTCTTGGACTTGC-ACTTGAGAGGCCAAAGAGTGTTA-CAATGGACTGGCT 1505
| || |||||||| || ||||||||| ||||||||||| | || ||||||||||
Sbjct 1473 AGGGCACTTGGACT-GCCACTTGAGAGACCAAAGAGTGTAAACA-TGGACTGGCT 1525
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 88001555385
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5