BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg483562

Length=489
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G44360.1 | Symbols:  | unknown protein; Has 23 Blast hits to...   652    0.0  


> AT2G44360.1 | Symbols:  | unknown protein; Has 23 Blast hits 
to 23 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa 
- 0; Fungi - 0; Plants - 23; Viruses - 0; Other Eukaryotes 
- 0 (source: NCBI BLink). | chr2:18320732-18321696 REVERSE 
LENGTH=643
Length=643

 Score =  652 bits (353),  Expect = 0.0
 Identities = 441/482 (91%), Gaps = 11/482 (2%)
 Strand=Plus/Plus

Query  19   tcaGAAGCAGTAATTAAATTTGAtttttttGATAAGAAAATaa---aaaaaaGA-GA-AG  73
            |||| ||||||||||||| |||||| ||||||| | |||||||   || | |||  | ||
Sbjct  47   TCAGGAGCAGTAATTAAAATTGATTATTTTGATTATAAAATAACTCAAGAGAGATCACAG  106

Query  74   AGAGATATGGCTGATGGTAAACCCGACGAACAGCTCTTTCAGCTTCTATCGGGTCTTCTT  133
            ||||||||||| || |||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct  107  AGAGATATGGCGGAGGGTAAACCCGACGAGCAGCTCTTTCAGCTTCTTTCGGGTCTTCTT  166

Query  134  CAACATGTGGAATCATTGACAAATACAGAAGAGGTTGAGCTACGTTCTAAGATTGAAGCT  193
            ||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  167  CAACAGGTAGAATCATTGACAAATACAGAAGAGGTTGAGCTACGTTCTAAGATTGAAGCT  226

Query  194  CTTGGTTTAGAAGTCACCAAAGTGCCTTCAAAATCTGCTCAACACCTCAATGAGGTGGAG  253
            ||||||||||||||||| |||||||| ||||| |||||||||||||||||||||||||||
Sbjct  227  CTTGGTTTAGAAGTCACTAAAGTGCCATCAAAGTCTGCTCAACACCTCAATGAGGTGGAG  286

Query  254  ATAGCTAAGGAATTAAACAAGTTATCAGCAAAGTTAGATGATGTAGATGAGATGATTTCA  313
            ||||||||||||||  |||||||||||||||||||||||||||| ||||||||||| |||
Sbjct  287  ATAGCTAAGGAATTGGACAAGTTATCAGCAAAGTTAGATGATGTGGATGAGATGATATCA  346

Query  314  TCTGCTATAGCTTCTGATCCACAGGTTCAGACGCTTCTTAGCGGCACAGCTGATGTTTGG  373
            || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  347  TCAGCTATAGCTTCTGATCCACAGGTTCAGACGCTTCTTAGCGGCACAGCTGATGTTTGG  406

Query  374  ATGCCGGTTATCACTGCCGGGGCCGAGGAGAGACTTAACTTCACAGCCTCTCTTGCTCAT  433
            |||||||||||||||||||| ||||| |||||||| ||||||||||||||||||||| ||
Sbjct  407  ATGCCGGTTATCACTGCCGGCGCCGAAGAGAGACTCAACTTCACAGCCTCTCTTGCTGAT  466

Query  434  GATGATGAGCTTTCTAAGAAGGA---TACTACCAACAAGACCAGC---TCTTAATCCCAT  487
            |||||||| |||||||| |||||   ||||||| |||| ||||||   ||||||||||||
Sbjct  467  GATGATGACCTTTCTAACAAGGAGACTACTACCGACAATACCAGCAGCTCTTAATCCCAT  526

Query  488  TT  489
            ||
Sbjct  527  TT  528



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 23308644208


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5