BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg483567
Length=2210
Score E
Sequences producing significant alignments: (Bits) Value
AT2G44430.1 | Symbols: | DNA-binding bromodomain-containing pr... 3188 0.0
> AT2G44430.1 | Symbols: | DNA-binding bromodomain-containing
protein | chr2:18333547-18336364 FORWARD LENGTH=2196
Length=2196
Score = 3188 bits (1726), Expect = 0.0
Identities = 2065/2224 (93%), Gaps = 42/2224 (2%)
Strand=Plus/Plus
Query 1 GAGCGTTTTTGTTTGTGTgagag-a-aagagagagacgagtctgtatggaaaaaggatga 58
||||||||||||||||| ||||| | ||||||||||||||||||||||| ||||||||||
Sbjct 1 GAGCGTTTTTGTTTGTGAGAGAGAAGAAGAGAGAGACGAGTCTGTATGGCAAAAGGATGA 60
Query 59 ggaaggaagaagaagaagaagCACGATCTTATAACATGAACGTCGACGATACTAAC-AC- 116
||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||
Sbjct 61 GGAAGGAAGAAGAAGAAGAAGCAGGATCTTATAACATGAACGTCGACGATACTAACAACA 120
Query 117 -CAACAAGTATATTTGCACTGATAATGATTACATCGAAGAACATGAAGATGATAACAACA 175
|||||| ||||| ||||||||||||||||||||||||||| |||||||| ||| |||||
Sbjct 121 ACAACAACTATATCTGCACTGATAATGATTACATCGAAGAAGATGAAGATAATAGCAACA 180
Query 176 GTAAGAAGAGCCAAGCACAAGCATGGGGCACGTGGGAAGAGCTGTTATTAGCATGCGCCG 235
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 CTAAGAAGAGCCAAACACAAGCATGGGGCACGTGGGAAGAGCTGTTATTAGCATGCGCCG 240
Query 236 TTAAACGACACGGATTTGGTGATTGGGATTCCGTCGCTACGGAGGTTCGATCCCGGAGCT 295
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 TTAAACGACACGGATTTGGTGATTGGGATTCCGTCGCTACGGAGGTTCGATCCCGGAGCT 300
Query 296 CTCTCTCCCACCTCCTCGCTTCCGCTAATGATTGTAGGCACAAGTATCGAGATCTCAAGC 355
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 CTCTCTCTCACCTCCTCGCTTCCGCTAATGATTGTAGGCACAAGTATCGAGATCTCAAGC 360
Query 356 GTCGATTTCAGGAACAAGCAAAAACCGATGCGGCTGCGACGGCG-ACGGTGgaagaagaa 414
|||||||||| ||||||| |||||| |||| | | ||||||| | | | | ||||||||
Sbjct 361 GTCGATTTCACGAACAAGAAAAAACAGATGTGACGGCGACGGTGGAAGAAG-AAGAAGAA 419
Query 415 gaagaagagagaGTCGGTAATAATATCCCTTGGCTTGAACAGCTACGTAACCTTCGTGTA 474
|||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 420 GAAGAAGAGAGAGTTGGTAATAATATCCCGTGGCTTGAACAGCTACGTAACCTTCGTGTA 479
Query 475 GCTGAGCTCCGTCGTGAAGTTGAGCGATATGATTGTTCGATACTATCGCTTCAATTGAAG 534
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 480 GCTGAGCTCCGTCGTGAAGTTGAGCGTTATGATTGTTCGATACTATCGCTTCAATTGAAA 539
Query 535 GTTaagaaattagaggaggagagagaagtcggagaagagaaaccagatctggaagatgag 594
|||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||
Sbjct 540 GTTAAGAAATTAGAGGAGGAGAGAGAAGTCGGAGAAGAGAAACCAGATCTGGAAAACGAG 599
Query 595 aggaaagaagagagatcggagaaCGACGGTTCTGAATCCGAGCACCGTGGAAAGGCGGTG 654
|||||||||||||||||||||||||| ||||||||||| |||||||||| |||||||||
Sbjct 600 AGGAAAGAAGAGAGATCGGAGAACGATGGTTCTGAATCTGAGCACCGTGAAAAGGCGGT- 658
Query 655 GTTTCAGCGGCGGAGGAATCTGATCGGGAAAACAGGTCGATGAACGAGTCGAACTCGACA 714
|| |||||||||||||||||||||||||||| ||||||||||||||||| |||||||||
Sbjct 659 -TT-CAGCGGCGGAGGAATCTGATCGGGAAAATAGGTCGATGAACGAGTCCAACTCGACA 716
Query 715 GAAACCGTCGGAGAAGACGAGAGAGTTGGCGGAGATGAACCGAGTCAGACTCGAGATGAT 774
| ||||| ||||||||| ||||||||| ||||||| ||||||||||| |||||||| |||
Sbjct 717 GCAACCGCCGGAGAAGAAGAGAGAGTTTGCGGAGACGAACCGAGTCAAACTCGAGAAGAT 776
Query 775 GACTCGGGTAATGATAATAATAATCCGGATCCTGATCCGGTTTATAACGATGCGGCGGCG 834
|| || ||||||||||| ||| |||||||||||||||||| | || |||||| ||||
Sbjct 777 GATTCCGGTAATGATAAGAAT---CCGGATCCTGATCCGGTTAACAAGGATGCGACGGCT 833
Query 835 GCGGTGGAGGAGGAGGAAGGATCGGTTAGTAGAGGATCGGAAGCGAGTCACTCAGACGAG 894
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 834 GCGG---AGGAGGAGGAAGGATCGGTTAGTAGAGGATCGGAAGCGAGTCACTCAGACGAG 890
Query 895 TTAGGCGAGTCAGGGACGTCGGAAACG-AAATGGAAACGGAAACGTAGGAAACAGGGTGG 953
||||||||||||||||| ||||||| | ||||||||||||||||| ||||||||||||||
Sbjct 891 TTAGGCGAGTCAGGGACATCGGAAA-GTAAATGGAAACGGAAACGAAGGAAACAGGGTGG 949
Query 954 TTCCGGCGACATCAGATCGGCTGAGAGTAAATCACAGCCGTTGATTGGTCTTCTTGATCT 1013
| ||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 950 TGCCGGCGAGATCAGATCGGCTGAGAGTAAATCACAGCCGTTGATTAGTCTTCTTGATCT 1009
Query 1014 GATTCGGTCCCATCCGCGTGGATCTTTGTTCGAACGCCGGCTTCGGAGCCAGGAGGCTAA 1073
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1010 GATTCGGTCCCATCCGCGTGGATCTTTGTTCGAACGCCGGCTTCGGAGCCAGGAGGCTAA 1069
Query 1074 GGATTACAAGAGCATGATTAAGCAACATTTGGACATTGAGACGATACAGAGAAAGTTGAA 1133
|||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1070 GGATTACAAGAGCATGGTTAAGCAACATTTGGACATTGAGACAATACAGAGAAAGTTGAA 1129
Query 1134 GCAAGGATCTTATGATTCTTCAAGCCTCACTTTTTACAGAGATCTACAGCTTCTCTTCAC 1193
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1130 GCAAGGATCTTATGATTCTTCAAGCCTCATTTTTTACAGAGATCTACAGCTTCTCTTCAC 1189
Query 1194 AAACGCCATTGTGTTTTTTCCTTTATCTTCCTCAGAATCAATGGCCGCTCACGAACTAAG 1253
|||||| ||||| || ||||||||||||||||||||||| ||||| |||||||||||| |
Sbjct 1190 AAACGCAATTGTCTTCTTTCCTTTATCTTCCTCAGAATCGATGGCAGCTCACGAACTACG 1249
Query 1254 AGCCATTGTTTCTCAAGAAATAAGGAAAGATACCGGAAAAGCTGGTCCCAGGTTAATAAA 1313
||| |||||||||||||||| || ||||| |||||||||||||| ||||||||||||||
Sbjct 1250 AGCTGTTGTTTCTCAAGAAATGAGAAAAGAGACCGGAAAAGCTGGCCCCAGGTTAATAAA 1309
Query 1314 CCGGGAAGCATCGGGTATGCGTAGTGGCAAAGCGGATGCTGAGACATCAGACTCGTCTCT 1373
| ||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1310 ACAGGAAGCATCCGGTATGCGTAGTGGCAAAGCGGATGCTGAAACATCAGACTCGTCTCT 1369
Query 1374 CTCTAGACAGAAATCTTC-GGCTACACTAGTTGTTTGTAAGAAGAGGAGTTCTGTTACCG 1432
|||||| ||||||||||| || | | || || ||||||||||||||| |||||||| |||
Sbjct 1370 CTCTAGGCAGAAATCTTCAGG-TCCTCTTGTCGTTTGTAAGAAGAGGCGTTCTGTTTCCG 1428
Query 1433 CTAAGGCTTCTCCTTCGTCATCAAGCTTTAGCCAAAAAGAGGAGACGAAAGAAGAGACAT 1492
|||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||
Sbjct 1429 CTAAGGCTTCTCCTTCGTCATCAAGCTTTAGCCAAAAAGATGATACGAAAGAAGAGACAT 1488
Query 1493 TATCAGAGGAGAAAGACAACACTGTGACTGGTGTAAGAAGCTCGAGAAGGGCCAACAAAG 1552
|||||||||| |||||||||| || ||||||||||||||||||||||||||| |||||||
Sbjct 1489 TATCAGAGGAAAAAGACAACATTGCGACTGGTGTAAGAAGCTCGAGAAGGGCAAACAAAG 1548
Query 1553 TGGTTGCTGCTGCTGCGGTTGTCGCTAATAATACCAAGACGGGCAAAGGCAAGAACAAAC 1612
||| |||| | | ||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1549 TGG---CTGC-G--G---TTGTCGCTAATAATACCAAGACGGGCAAAGGCAGGAACAAAC 1599
Query 1613 AGAAACAGACAGAGTCGAAAACAAATTCGTTGAATGATAATAGTAGTAAACAAGATACAG 1672
|||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||
Sbjct 1600 AGAAACAGACAGAGTCGAAAACAAATTCGTCGAATGATAATAGTAGTAAACAAGACACAG 1659
Query 1673 GTAAAACAGAGAAGAAAACGGTTTCATCAGATAAGAAGAAGAGTGTGGCTGATTTCTTGA 1732
|||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||
Sbjct 1660 GTAAAACAGAGAAGAAAACGGTTTCAGCAGATAAAAAGAAGAGTGTGGCTGATTTCTTGA 1719
Query 1733 AGAGATTAAAGAAGAACTCTCCGCAAAAAGAAGCTAAAGATCAGAATAAGAGCGGTGGAA 1792
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1720 AGAGATTAAAGAAGAACTCTCCGCAAAAAGAAGCTAAAGATCAGAATAAGAGCGGTGGAA 1779
Query 1793 ATGGTAAGAAAGATAGTAAAACAAAACCAAGAGAACTTAGAAGTAGCAGTGTGGGTAAAA 1852
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1780 ATGTTAAGAAAGATAGTAAAACAAAACCAAGAGAACTTAGAAGTAGCAGTGTGGGTAAAA 1839
Query 1853 AGAAGGCCGAGGTAGAGAATGCTCCGGTGAAAAGAGCCCCTGGGAGACCGCAGAAGAAAA 1912
|||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||
Sbjct 1840 AGAAGGCCGAGGTAGAGAATACTCCGGTGAAAAGAGCCCCCGGGAGACCGCAGAAGAAAA 1899
Query 1913 CAGCAGAGTCAACCGCATCTGCCTCGGGAAAACGGGGTAGAGATACCGGAAGCACGGGAA 1972
|||||||| |||| ||||||||||| |||||||||||||| ||||| ||||||||||| |
Sbjct 1900 CAGCAGAGGCAACTGCATCTGCCTCAGGAAAACGGGGTAGGGATACAGGAAGCACGGGGA 1959
Query 1973 AGGACAATAAACAGCCAAAGAAAAGAATCAGAAAATGAGAATTGAAAACACCTTTTGCCC 2032
|||||||||||||||||||||||||||||||||||||| |||| |||||| ||| ||||
Sbjct 1960 AGGACAATAAACAGCCAAAGAAAAGAATCAGAAAATGACAATTCAAAACATGTTT-GCCC 2018
Query 2033 CTTTGGTGTC-TTCTCTTAAGAGCACAGGGTACTGTATATGCTTTGGAGTATTTT----A 2087
|||| ||| | || |||||||||| || | || ||||||||||||||||| |||| |
Sbjct 2019 CTTTAGTGGCATT-TCTTAAGAGCTCAAGTTATTGTATATGCTTTGGAGTTTTTTTTTTA 2077
Query 2088 -TCTTAATTCTAACACTAGGGGTCATATTCTCATAGTTATGGTATGGATTAGGGAAAGTG 2146
|||||||||||||| ||| ||| ||||||||||||||||| || | || |||||||
Sbjct 2078 ATCTTAATTCTAACATTAGAAGTCCTATTCTCATAGTTATGG-AT---T-AGAGAAAGTG 2132
Query 2147 TATTTTTGCTTGCTGGCATCAGTAATATTCATTCCTTCTTTTCTATTATATTTTGCTCAT 2206
|||||| |||||||| |||||||||||||||||||||||||||| |||||||||||||||
Sbjct 2133 TATTTTGGCTTGCTGTCATCAGTAATATTCATTCCTTCTTTTCTGTTATATTTTGCTCAT 2192
Query 2207 TTCC 2210
||||
Sbjct 2193 TTCC 2196
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 109637990280
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5