BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg483568
Length=1738
Score E
Sequences producing significant alignments: (Bits) Value
AT2G44440.1 | Symbols: | Emsy N Terminus (ENT) domain-containi... 2302 0.0
> AT2G44440.1 | Symbols: | Emsy N Terminus (ENT) domain-containing
protein | chr2:18336400-18339214 REVERSE LENGTH=1775
Length=1775
Score = 2302 bits (1246), Expect = 0.0
Identities = 1625/1795 (91%), Gaps = 77/1795 (4%)
Strand=Plus/Plus
Query 1 GGCAAATAATGAGCTTTCGGCAAAATCTGTAATC-TCTAAGCTGAATCACTTGTTGTGGA 59
||||||||||||||||| |||||||||||||||| | ||||||||||||||| | ||| |
Sbjct 1 GGCAAATAATGAGCTTTAGGCAAAATCTGTAATCTTTTAAGCTGAATCACTTATAGTGAA 60
Query 60 GCTCTGATTTGTTGCCGGAGCAAGAATTTGATCCGTCGCTTCTTTC---T------T--- 107
|||| |||||||| |||||||||||| ||||||||||||||||||| | |
Sbjct 61 GCTCAGATTTGTTACCGGAGCAAGAAATTGATCCGTCGCTTCTTTCTTATAGCAGCTCGA 120
Query 108 --AAGTACAAAATTGAGCTC-AAACC-AAAATCGAGTCTTCTTCTAAGTCAAATTGAAAT 163
|||||||||||||||||| ||||| ||||||||||| |||||||||||||||||||||
Sbjct 121 CAAAGTACAAAATTGAGCTCAAAACCAAAAATCGAGTCCTCTTCTAAGTCAAATTGAAAT 180
Query 164 CAACCTCGCGCAA-TTGTTCTTGATTCTTCGTCTTGCTTCTCCAATTT-CACCTTCGAGA 221
|||||| | |||| |||| ||||||||||||||| ||||||||||||| || ||||||||
Sbjct 181 CAACCTTG-GCAAATTGTGCTTGATTCTTCGTCTAGCTTCTCCAATTTTCATCTTCGAGA 239
Query 222 TTAGTCTCTTGATTAAAGCTTCGT-ATGGACTACGAACCAAT-TGATAGCAGTGGAACTG 279
|| ||||||||||| ||||||||| ||||||| | || | | |||||||||||||||||
Sbjct 240 TTCGTCTCTTGATTTAAGCTTCGTCATGGACTGCAAATCG-TCTGATAGCAGTGGAACTG 298
Query 280 ATGATGATCTGCCACCGTC--A-------C---GAGGAGGAGGACGTGT--G-G-----C 319
||||||||||||||||||| | | ||||||||||| | | | | |
Sbjct 299 ATGATGATCTGCCACCGTCGCATAGAGTTCCACGAGGAGGAGGAGGAGGAAGAGGAGGAC 358
Query 320 ---TG-CT---AATGGAAGATCTTTGAATCTTCCTCCATCTTATCCAAAGATATATGATG 372
|| || ||||||||| ||||||||||||| |||||||| |||||||| |||||||
Sbjct 359 GCGTGGCTGGTAATGGAAGACCTTTGAATCTTCCGCCATCTTACCCAAAGATGTATGATG 418
Query 373 ATGTTGCTGCTGATATGGAAGCTCAGATTCACCAGATTGAGAAGGAAGCATATATCTCTG 432
|| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 419 ATCTTGCTGCGGATATGGAAGCTCAGATTCACCAGATTGAGAAGGAAGCATATATCTCTG 478
Query 433 TTCTAAGAGCCTTTAAAGCTCAAGGAGATGCTATTTCATGGGAAAAAGAAGGTGTAATAA 492
|| |||||||||||||||| |||||||||||||||||||||||||||||| |||| ||||
Sbjct 479 TTTTAAGAGCCTTTAAAGCCCAAGGAGATGCTATTTCATGGGAAAAAGAAAGTGTCATAA 538
Query 493 CTGAGCTACGTAGAGAGTTGAGTTTATCGAATGAGGAGCATAGAGAACTTCTAGGTCGTG 552
|||| |||||| ||||||||||||||||||||||||||||||||| |||||||| ||||
Sbjct 539 CTGAATTACGTAAAGAGTTGAGTTTATCGAATGAGGAGCATAGAGAGCTTCTAGGCCGTG 598
Query 553 TTAACGCAGATGATACAATACGAAGGATAAGGGAATGGAGACAATCTGGAGGAATGCAAC 612
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 599 TTAACTCAGATGATACAATACGAAGGATAAGGGAATGGAGACAATCTGGAGGAATGCAGC 658
Query 613 CAAGTGTGCGCAATGCTGCTCAAGTGGTTAACGATACATTGCCAAGCACTTCTGTTCCAG 672
||||| ||||||||||||||||||||||| ||||||||||||||||| |||||||| |||
Sbjct 659 CAAGTATGCGCAATGCTGCTCAAGTGGTTCACGATACATTGCCAAGCCCTTCTGTTTCAG 718
Query 673 CTTCTATTAAGAAGCACAAACCAAACCAGCCAATTCCTGCTCAACCATTCGCTAGTTCTT 732
||||||| |||| ||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 719 CTTCTATGAAGACGCACAAACCAAACCAGCCAATTCCTTCTCAACCATTCGCTAGTTCTT 778
Query 733 CACCTTCTTTTCATCCTCAAGCTGATCCCACTCACCCATTTGCTTCATCCACAGCCAAAC 792
||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| ||||
Sbjct 779 CACCTTCTTTTCATCCTCAAGCTGATCCCACTCACCCGTTTGCTTCATCGACAGCTAAAC 838
Query 793 GGGGAGCTGTTCCTATTGTCAAGGGCAAAAAGCATAAACCAGTTTTTCCTGGTTCGTCTT 852
| ||| ||||||||||||||||||||||||| || ||||||||||||||||| |||||||
Sbjct 839 GAGGACCTGTTCCTATTGTCAAGGGCAAAAAACACAAACCAGTTTTTCCTGGCTCGTCTT 898
Query 853 CCACAAAACCCGTCCCATACCATCCTTCAGATCAACCTCCACGAGGACAAGTCATGAACA 912
||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 899 CCACAAAACATGCCCCATACCATCCTTCAGATCAACCTCCACGAGGACAAGTCATGAACA 958
Query 913 GATTACCAAT-TGTTCCTACCAGTTCAAGTGAACCCACAAACGGAACCGATCCTGAATCT 971
|||||||| | ||||||| ||||||||||||||||||||||||||| |||||||||||||
Sbjct 959 GATTACCA-TCTGTTCCTGCCAGTTCAAGTGAACCCACAAACGGAATCGATCCTGAATCT 1017
Query 972 TTTATT-GGCAA-AAGAGTTAGAACAAAGTGGCCTGAAGACAATACATTTTACGACGCTG 1029
||| || || || |||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1018 TTT-TTAGG-AAGAAGAGTTAGAACAAAGTGGCCTGAGGACAATACATTTTACGACGCTA 1075
Query 1030 TCATTACC-ATGTATAATCCAGTTGAGGGTCGCCATGCTTTAGTTTATGACATTGCAACA 1088
|||||||| | ||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1076 TCATTACCCA-GTATAATCCAGTTGAGGGTCGTCATGCTTTAGTTTATGACATTGCAACA 1134
Query 1089 GCT-CATGAGACATGGGAATGGGTTA-ATCTCTCAGAGATATCTCCTGGGGATATAGAGT 1146
|| | |||||||||||||||||||| | |||||||||||||||||||||||||||||||
Sbjct 1135 CCTTC-TGAGACATGGGAATGGGTTAGA-CTCTCAGAGATATCTCCTGGGGATATAGAGT 1192
Query 1147 GGATAGGAGAGGATCCTGGGGTTGGTAATCGATATGGTTATAACGGACAAGGTCATGAAC 1206
|||||||||||||||||||| |||||||||||||| || ||||||||||||| ||
Sbjct 1193 GGATAGGAGAGGATCCTGGGCTTGGTAATCGATATA---AT---GGACAAGGTCATGGAC 1246
Query 1207 TAAATAGAACTACCGGACCCAACAGTATTCCACAACGAGGAAGCGGTTTGGCA-AAGAAC 1265
| ||||||||||||||||||||| || |||||||||||||||||||||||| | ||||||
Sbjct 1247 TGAATAGAACTACCGGACCCAACTGTGTTCCACAACGAGGAAGCGGTTTGG-AGAAGAAC 1305
Query 1266 ACTATCAGAAAGGATTTCAGAACATCACAGAATGGAACTGGGAAAAAGAAACATCTCAAT 1325
||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||| ||
Sbjct 1306 ACTATCAGAAAGGGTTTCAGAACATCACAGAATGGAACTGGAAAAAAGAAACATCTCGAT 1365
Query 1326 ATACGAATCCGCCAAACAAATGTCCTAATCAGAGAGGTGGAGAGAGTTCTTGGTTCACAC 1385
|||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||
Sbjct 1366 ATACGAATCCGCCAAACAGATGTCCTAATCAGAGAGGTGGAGAGAGTTCTTCGTTCACAC 1425
Query 1386 AATCCAGATCCCCACGAAGTTGAAAGGGCTAGGAGAATTTTGGAGGAGCACGAGCATGCA 1445
||||||||||| |||||||||||||||||| |||| |||||||||||||||||||||||
Sbjct 1426 AATCCAGATCCTTACGAAGTTGAAAGGGCTAAGAGAGTTTTGGAGGAGCACGAGCATGCA 1485
Query 1446 CTTGTGGGCGCAATTGCAAAGCTTGGAAATATTTCCGATGGAGAAAACGGCAAAAGGTGC 1505
||||||||||||||||||||||||||| ||||||||||||||||||||| || |||||
Sbjct 1486 CTTGTGGGCGCAATTGCAAAGCTTGGAGATATTTCCGATGGAGAAAACG--AA--GGTGC 1541
Query 1506 ATTTCGTCAGTAGCTTATGTTTGAATCAAGCAATTTTGCCAAGGCACAGTGCAATGTGCG 1565
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1542 ATTTCGTCGGTAGCTTATGTTTGAATCAAGCAATTTTGCCAAGGCACAGTGCAATGTGTG 1601
Query 1566 GTCCATGAGGAGCCGGTGAAGAAGAGATCGAAGGTCAAAGTCTCACCTTCTTTGATGTTA 1625
|||||||||||| | |||||||||||||||||||||| ||||||| ||||||||||||||
Sbjct 1602 GTCCATGAGGAGTCAGTGAAGAAGAGATCGAAGGTCAGAGTCTCAACTTCTTTGATGTTA 1661
Query 1626 CCCtttttttGGGTATCTGACTGTAATTTTTTGCTGACACTAGAGATTAGCTTGACCTGG 1685
||||||| ||||||||||||||||||||||| |||||||||||||||||||| ||||||
Sbjct 1662 CCCTTTTCTTGGGTATCTGACTGTAATTTTT-GCTGACACTAGAGATTAGCTCAACCTGG 1720
Query 1686 ATCTTGGTTTTGTTGGATATAT--GTTCAATGGAGTAGTTTCGGTATCTTGTCAC 1738
|||| |||||||||||||||| |||||||||| |||||| ||||| |||||||
Sbjct 1721 ATCTCCGTTTTGTTGGATATATATGTTCAATGGAATAGTTTGGGTATATTGTCAC 1775
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 85943333040
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5