BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg483573
Length=1684
Score E
Sequences producing significant alignments: (Bits) Value
AT2G44480.1 | Symbols: BGLU17 | beta glucosidase 17 | chr2:1835... 2684 0.0
> AT2G44480.1 | Symbols: BGLU17 | beta glucosidase 17 | chr2:18359734-18363088
FORWARD LENGTH=1687
Length=1687
Score = 2684 bits (1453), Expect = 0.0
Identities = 1612/1689 (95%), Gaps = 9/1689 (1%)
Strand=Plus/Plus
Query 1 TTGATCCAGTTATAAAA-CTTTACTCCCAAAACTTAAAGAAACCATGGCCATTAAATCCA 59
||||||||||||||||| |||| || | |||||| |||||||| |||||||| |||||||
Sbjct 3 TTGATCCAGTTATAAAACCTTTCCTACGAAAACTCAAAGAAACAATGGCCATCAAATCCA 62
Query 60 TATTTatcatcatcatcat---catcatcaAATCAATATCTGAACTTCGTGCTTTGGATC 116
||||||||||||||||||| |||||||| |||||||||||||||| |||||||||||
Sbjct 63 TATTTATCATCATCATCATCAGCATCATCACATCAATATCTGAACTTTATGCTTTGGATC 122
Query 117 CTTCGTTTCTTCGTCTTTCGACCTCTCTCCATCGAAGTAGCTTTCCTAAAGATTTTCGGT 176
||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct 123 CTTCGTTTCTTCGTCTTTCGACCTCTCTCCAAAGAAGTAGCTTTCCTCAAGATTTTCGGT 182
Query 177 TTGGTGCAGCTTTGAGTGCTTATCAGAGTGAAGGAGCAACCAACGTTGATGGAAGAGAAC 236
|||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 183 TTGGTGCAGCTTCGAGTGCTTATCAGAGTGAAGGAGCAGCCAACGTTGATGGAAGAGAAC 242
Query 237 CAAGCATATGGGATACGTTTACTAAACAATATCCAGAAAAGATTTCGGATGGTAGCAATG 296
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 243 CAAGCATATGGGATACGTTTACTAAACAATATCCAGAAAAGATTTCAGATGGTAGCAATG 302
Query 297 GCGACGTCGCAGACGAATTTTATTACCTTTTCAAGGAGGACGTGGCACTTATGAAAGAAA 356
||||||| ||||||||||||||||||| |||||||||||||||||||| |||||||||||
Sbjct 303 GCGACGTTGCAGACGAATTTTATTACCGTTTCAAGGAGGACGTGGCACATATGAAAGAAA 362
Query 357 TAGGGCTGGACTCATTTAGGTTTTCGATTTCTTGGTCAAGAATACTACCTCGAGGTA-GG 415
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||
Sbjct 363 TAGGGCTGGACTCATTTAGGTTTTCGATTTCTTGGTCCAGAATACTACCTCGAGGTACGG 422
Query 416 ATTGCTGGTGGAGTAAATCAGGCAGGAATTAACTTCTACAATCATCTCATCAATGAACTC 475
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 423 -TTGCTGGAGGAGTAAATCAGGCAGGAATTAACTTCTACAATCATCTCATCAATGAACTC 481
Query 476 ATTTCAAATGGTATAAGGCCTCTGGGTACTCTGTTTCACTGGGACACACCTCAGGCACTT 535
||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||
Sbjct 482 ATTTCAAATGGTATAAGGCCTCTGGTTACTCTGTTTCACTGGGATACACCTCAGGCACTT 541
Query 536 GAAGATGAATATGGCGGATTCTTAAACCCACAAATCGTGAATGATTTCTTAGAATATGTG 595
||||||||||||||||| ||||||||||||||||||||||| |||||| |||||||||||
Sbjct 542 GAAGATGAATATGGCGGGTTCTTAAACCCACAAATCGTGAAAGATTTCGTAGAATATGTG 601
Query 596 GATATATGTTTCAAAGAGTTTGGAGATAGAGTGAAGGAGTGGATCACAATCAACGAGCCT 655
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 602 GATATATGTTTCAAAGAGTTTGGAGATAGAGTGAAGGAGTGGATCACAATCAACGAGCCT 661
Query 656 AACATGTTCGCAATGTTAGGTTACAATGTCGGTAATATTGCTCCAGGACGTTGTTCGAGC 715
|||||||||||| ||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct 662 AACATGTTCGCAGTGTTAGGTTACAATGTCGGTAATATTGCTCCGGGGCGTTGTTCGAGC 721
Query 716 TATGTTCAAAACTGCACGGTTGGGAACTCAGCCACTGAGCCATACCTCGTGGCTCATTAC 775
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 722 TATGTTCAAAACTGCACGGTTGGGAACTCAGCCACTGAGCCATATCTCGTGGCTCATTAC 781
Query 776 TTGATCCTTTCTCATGCCGCTGCTGTCCAACTCTATAGAAAGAAATATCAGAGTTTTCAT 835
|| |||||||||||||||||| | ||||||||||||||| ||||||||||||||||||||
Sbjct 782 TTAATCCTTTCTCATGCCGCTACAGTCCAACTCTATAGAGAGAAATATCAGAGTTTTCAT 841
Query 836 GGAGGGACCATAGGAATGACTATTCAAACATATTGGATGATTCCAAAATATAACACTCCT 895
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 842 GGAGGGACCATAGGAATGACTATTCAAACATATTGGATGATTCCAAAATATAACACTCCT 901
Query 896 GCTTGTAGAGAAGCTGCCGAAAGGGCTCTTGACTTCTTCTTCGGATGGTTTGCTGATCCG 955
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 902 GCTTGTAGAGAAGCTGCCAAAAGGGCTCTTGACTTCTTCTTCGGATGGTTTGCTGATCCG 961
Query 956 ATTACTTACGGAGATTATCCTAAGACAATGAGAGAGTTGGTGGGAAATAGGCTCCCAAAA 1015
|| ||||||||||||||||| || |||||||||||||||||||||||||| |||||||||
Sbjct 962 ATCACTTACGGAGATTATCCAAAAACAATGAGAGAGTTGGTGGGAAATAGACTCCCAAAA 1021
Query 1016 TTCACAAAAAAGCAGTCAAAAATGGTGAGAGGATCCTTTGACTTTTTTGGACTCAACTAT 1075
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1022 TTCACAAAAAAGCAGTCAAAAATGGTGAGAGGATCCTTTGACTTTTTTGGACTCAACTAT 1081
Query 1076 TACACTTCAAGATACGTTGAAGATGTTATGTTCTACGCTAACACCAATCTTAGTTACACA 1135
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1082 TACACTTCAAGATACGTTGAAGATGTTATGTTCTACGCTAACACCAATCTTAGTTACACA 1141
Query 1136 ACGGACAGTCGCGTCAATCAAACTACGGAGAAAAATGGAGTTCCTCTGGGTGAACCGACG 1195
|| || |||||||| |||||||| ||||||||||||||||||||| ||||||||||||||
Sbjct 1142 ACAGATAGTCGCGTAAATCAAACAACGGAGAAAAATGGAGTTCCTGTGGGTGAACCGACG 1201
Query 1196 AGTGCTGATTGGCTCTTTATATGTCCAAAAGGGTTCCAAGATGTTCTATTATACATAAAA 1255
||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||
Sbjct 1202 AGTGCTGATTGGCTCTTTATATGTCCAGAAGGGTTTCAAGATGTTCTATTATACATAAAA 1261
Query 1256 TCAAAGTATCAAAACCCAGTAATCCTTGTCACCGAGAATGGAATGCCTAGCGAGAATGAC 1315
|| |||| |||||| ||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct 1262 TCGAAGTTTCAAAATCCAGTAATCCTCGTCACTGAGAATGGAATGCCTAGCGAGAATGAC 1321
Query 1316 AAATCATTATCCGTCAACAAAGCTCTCAATGACGAGGAAAAGATCAAATATCACCAACTC 1375
|||||||| ||||| |||| ||| ||||||||||||| ||||||||||||||||||||||
Sbjct 1322 AAATCATTGTCCGTGAACATAGCACTCAATGACGAGGCAAAGATCAAATATCACCAACTC 1381
Query 1376 CATCTCTCTGCTCTTCTAGAAGCAGTCAGTCAAGGTGCAGATGTGAGAGGATATTATGTA 1435
|||||| |||||||||||||||||||||||||||| ||||||||||||||||||||| ||
Sbjct 1382 CATCTCACTGCTCTTCTAGAAGCAGTCAGTCAAGGAGCAGATGTGAGAGGATATTATATA 1441
Query 1436 TGGTCATTAATGGATGATTTCGAGTGGGAATTTGGTTACAAATATAGATACGGATTGGTC 1495
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1442 TGGTCATTAATGGATGATTTTGAGTGGGAATTTGGTTACAAATATAGATACGGATTGGTC 1501
Query 1496 TACGTTGATTTTCAAGATGGACTTAAACGATATCTCAAGAGTTCTGCTCTTTGGTACCAT 1555
|||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||
Sbjct 1502 TACGTTGATTTTCAAGATGGACTTAAACGACACCTCAAGAGTTCTGCTCTTTGGTACCAT 1561
Query 1556 CATTTTCTATCCAACTCGTCCTCCTGTCAAATGGACTAGCGCAAGTAATATCTATAATTA 1615
||||||||||||||||| ||||||| |||||||||||||| ||| |||||||| |||||
Sbjct 1562 CATTTTCTATCCAACTCATCCTCCTATCAAATGGACTAGC--AAGGAATATCTAAAATTA 1619
Query 1616 ATATATTCAATTTATACAACTTTCTTATGTATTCCTAAGAATAAAATAAAAACATGCAAC 1675
|||| |||| ||||||||||||||||||||||||||||||||||||| ||| ||||||||
Sbjct 1620 ATATCTTCACTTTATACAACTTTCTTATGTATTCCTAAGAATAAAATGAAA-CATGCAAC 1678
Query 1676 TTTAGCAGT 1684
|||||||||
Sbjct 1679 TTTAGCAGT 1687
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 83232503610
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5