BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg483577
Length=2107
Score E
Sequences producing significant alignments: (Bits) Value
AT2G44500.1 | Symbols: | O-fucosyltransferase family protein |... 3029 0.0
> AT2G44500.1 | Symbols: | O-fucosyltransferase family protein
| chr2:18374341-18376790 FORWARD LENGTH=2183
Length=2183
Score = 3029 bits (1640), Expect = 0.0
Identities = 1994/2154 (93%), Gaps = 68/2154 (3%)
Strand=Plus/Plus
Query 1 TCCCTGATTCAACGCCGTAGCTGTGTGACTGAACATTGCAACGATTTCCTCAAAACCCAA 60
||||||||||| ||||||||||||||||| ||||||||| ||| |||||||||||||||
Sbjct 1 TCCCTGATTCATCGCCGTAGCTGTGTGACCGAACATTGCTGCGAGTTCCTCAAAACCCAA 60
Query 61 ATCCTTCTTCTTCAAAGACTCTGTTTATTC--T-TT-CTTTCTTCAATGGCGTTATCGAA 116
||| |||||| ||||||||||||||| ||| | || |||||||||||||||||||||||
Sbjct 61 ATCTTTCTTCCTCAAAGACTCTGTTTTTTCTTTCTTCCTTTCTTCAATGGCGTTATCGAA 120
Query 117 AAACAGTAACAGCAGCAGCAGCAACAAGAAGAAAGTTTCGTATATCTCAGTCCCTTCTCA 176
|||||||||||| | |||| ||||||||||||||||||||||||||||||||||||||
Sbjct 121 AAACAGTAACAGTAACAGCTTTAACAAGAAGAAAGTTTCGTATATCTCAGTCCCTTCTCA 180
Query 177 GATCATAAACTCTTTATCATCATCCTCTTTGCAATCTCTTCTTGTTTCTCCCAAGAAATC 236
||||||||||||||||||||| ||||| || |||||||||||||||||||||||||||||
Sbjct 181 GATCATAAACTCTTTATCATCTTCCTCATTACAATCTCTTCTTGTTTCTCCCAAGAAATC 240
Query 237 ATCAAGAAGCACCAACAGATTCAGCGTCTCTTATAGAAACCCTAGAATCTGGTTCTTTAC 296
||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||
Sbjct 241 ATCAAGAAGCACCAACAGATTCAGCTTCTCTTATAGGAACCCTAGAATCTGGTTCTTTAC 300
Query 297 TCTCTTCCTCGTCTCACTCTTTGGAATGTTGAAACTTGGATTCAACGTTGACCCAATCTC 356
|||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct 301 TCTCTTCCTCGTCTCACTCTTTGGAATGTTGAAACTCGGTTTCAACGTTGACCCAATCTC 360
Query 357 TCTCCCTTTCTCACGTTACCCTTGTTCGACGA---ACCATCCATTAAGCTTCGACGGTGA 413
||||||||||||||||||||||||||| |||| | || ||| ||||||||||||| ||
Sbjct 361 TCTCCCTTTCTCACGTTACCCTTGTTCAACGACCCAACAACCACTAAGCTTCGACGGAGA 420
Query 414 ACAAAACGCTGAATCCCATCTGGGTTTGGTTCAAGAATCGAATTTGGCTCCTGGGTCTTC 473
||||||||||| ||||||||| ||||||| |||||| ||| |||| || ||||||| ||
Sbjct 421 ACAAAACGCTGCATCCCATCTTGGTTTGGCTCAAGAGCCGATTTTGTCTACTGGGTCATC 480
Query 474 GAATTCGAATGGGATTATTCAATTAGACGGTGGAAAAAACGAGACTTTGTTGACGGAAGG 533
||||||||||| |||||| |||||| |||||||||| |||||||||||||| ||||||||
Sbjct 481 GAATTCGAATGCGATTATACAATTAAACGGTGGAAAGAACGAGACTTTGTTAACGGAAGG 540
Query 534 TGATTTCTGGAAACAACCTGATGGGTTAGGGTTTAAGCCCTGTTTGGGATTTACAAGTCA 593
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 TGATTTCTGGAAGCAACCTGATGGGTTAGGGTTTAAGCCCTGTTTGGGATTTACAAGTCA 600
Query 594 GTATAGAAGAGATAGCAATTCGATTTTGAAGAACAGATGGAAATATTTGCTTGTTGTTGT 653
||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 601 ATATAGAAAAGATAGCAATTCGATTTTGAAGAACAGATGGAAGTATTTGCTTGTTGTTGT 660
Query 654 CTCTGGTGGGATGAATCAGCAAAGGAATCAGATTGTTGATGCTGTTGTGATCGCTAGGAT 713
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 CTCTGGTGGGATGAATCAGCAAAGGAATCAGATTGTTGATGCTGTTGTGATCGCTAGGAT 720
Query 714 TCTTGGTGCTTCTTTAGTTGTTCCGGTTTTACAGGTTAATGTCATTTGGGGAGACGAAAG 773
||||| ||||||||||||||||| ||||| |||||||||||||||||||||||||||||
Sbjct 721 CCTTGGAGCTTCTTTAGTTGTTCCTGTTTTGCAGGTTAATGTCATTTGGGGAGACGAAAG 780
Query 774 TGAATTTGCGGATATATTCGATTTGGAGCATTTCAAGGATGTTTTAGCGGATGATGTTCA 833
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 781 TGAATTTGCGGATATATTCGATTTGGAGCATTTCAAGGATGTTTTAGCAGATGATGTTCA 840
Query 834 TATAGTGTCTTCTCTACCTTCTACACATGTAATGACGAGACCTGTTGAAGAGAAAAGGAC 893
|||||| || ||| |||||||||||||||| ||||||||||||||||||||||| |||||
Sbjct 841 TATAGTTTCGTCTTTACCTTCTACACATGTTATGACGAGACCTGTTGAAGAGAAGAGGAC 900
Query 894 TCCACTTCATGCTTCTCCTCAATGGATTCGTGCTCATTATCTTAAGCGAATTAACAGAGA 953
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 901 TCCACTTCATGCTTCTCCTCAATGGATTCGTGCTCATTATCTTAAGCGAATTAACAGAGA 960
Query 954 AAGAGTTTTACTTCTTCGTGGCCTCGATTCAAGACTCTCCAAGGACCTTCCTTCTGATCT 1013
||||||||||||||| ||||| |||||||||||||||||||| ||||| ||||| |||||
Sbjct 961 AAGAGTTTTACTTCTCCGTGGACTCGATTCAAGACTCTCCAAAGACCTCCCTTCAGATCT 1020
Query 1014 TCAGAAACTCCGATGCAAGGTGGCTTTCCAAGCGCTGAGATTTTCTCCGAGGATTCTTGA 1073
||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||
Sbjct 1021 TCAGAAACTCCGATGCAAGGTTGCTTTCCAAGCGCTTAGATTTTCTCCGAGGATTCTTGA 1080
Query 1074 ACTTGGTAACAAGTTAGCTTCAAGAATGCGTAACCAAGGACAGTATCTCTCACTTCATCT 1133
||| ||||| || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1081 ACTCGGTAATAAACTAGCTTCAAGAATGCGTAACCAAGGACAGTATCTCTCACTTCATCT 1140
Query 1134 AAGAATGGAGAAAGATGTTTGGGTTAGAACTGGTTGTCTCCCTGGTTTAACTCCCGAGTA 1193
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1141 AAGAATGGAGAAAGATGTTTGGGTTAGAACTGGTTGTCTCCCTGGTTTAACTCCCGAGTA 1200
Query 1194 CGATGAAATAGTCAACAGCGAAAGGGAA-GCTCACCCTGAGCTTCTTACCGGTAGATCAA 1252
|||||||||||||||||||||||| ||| | ||||||||||||||||||||||||||||
Sbjct 1201 CGATGAAATAGTCAACAGCGAAAGAGAACGA-CACCCTGAGCTTCTTACCGGTAGATCAA 1259
Query 1253 ACATGACTTATCACGAGAGAAAACTCGCCGGTCTATGCCCTTTAACTGCTCTAGAAGTCA 1312
||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||
Sbjct 1260 ACATGACTTATCACGAGAGAAAACTTGCCGGTTTATGCCCTTTAACTGCTCTAGAAGTCA 1319
Query 1313 CAAGGCTGCTTAAAGCATTAGAAGCTCCAAAGAATGCGAGAATCTATTGGGCAGGAGGAG 1372
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1320 CAAGGCTGCTTAAAGCATTAGAAGCTCCAAAGGATGCGAGAATCTATTGGGCAGGAGGAG 1379
Query 1373 AGCCTCTAGGAGGAAAAGAGGTTTTGGAGCCACTAACTAAAGAATTCCCTCAGTTCTACA 1432
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1380 AGCCTCTAGGAGGAAAAGAGGTTTTGGAGCCACTAACTAAAGAATTCCCTCAGTTCTACA 1439
Query 1433 ACAAGCATGATCTTGCATTACCAGGCGAACTCGAACCATTCGCCAAGAAAGCTTCGGTTA 1492
||||||| |||||||| ||||| ||||| || |||||||| ||||| |||||||||||||
Sbjct 1440 ACAAGCACGATCTTGCTTTACCTGGCGAGCTTGAACCATTTGCCAACAAAGCTTCGGTTA 1499
Query 1493 TGGCTGCTATCGACTACATTGTCTGCGAAAAGAGCGATGTTTTCATACCGTCTCATGGAG 1552
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1500 TGGCTGCTATAGACTACATTGTCTGCGAAAAGAGCGATGTTTTCATACCGTCTCATGGAG 1559
Query 1553 GAAACATGGGACATGCGTTACAAGGGCAACGAGCTTACGCTGGTCACAAGAAATACATCA 1612
|||| |||||||| ||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1560 GAAATATGGGACACGCGTTACAAGGGCAAAGAGCTTACGCTGGTCACAAGAAATACATCA 1619
Query 1613 CTCCTAATAAGAGACAGATGCTTCCTTATTTCATGAATTCGTCGCTTCCTGAATCGGATT 1672
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1620 CTCCTAATAAGAGACAGATGCTTCCTTATTTCATGAACTCGTCGCTTCCTGAATCGGATT 1679
Query 1673 TTAACAGGATTGTGAAAGATCTTCATCGAGAATCGCTAGGACAGCCGGAATTGAGAATGA 1732
||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1680 TTAACAGAATTGTGAAAGATCTTCATCGAGAATCGCTAGGACAGCCGGAGTTGAGAATGA 1739
Query 1733 GCAAAGCCGGTAAAGATGTTACAAAACATCCTGTTCCAGAGTGTATGTGCTCGGATAGAC 1792
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1740 GCAAAGCTGGTAAAGATGTTACAAAACATCCTGTTCCAGAGTGTATGTGCTCGGATAGAC 1799
Query 1793 GacaacaacaacaacaacaacaacaacaaTCCGATGCTTAAGCCTTGAAGGACATTTTG- 1851
| | |||||| ||||||| ||||||||||||||||||||||||||||||
Sbjct 1800 -A-A-CAACAAGAACAACAG---------TCCGATGCTTAAGCCTTGAAGGACATTTTGG 1847
Query 1852 ATCATTTCACATTATTGGTGGCGCGGAAGATGAAGAAGACGCCGATTTTTT----A---- 1903
| |||| | || | |||| ||||||| |||||||||||||||||||||| |
Sbjct 1848 A-CATT--A--TT-T-GGTG-CGCGGAAAATGAAGAAGACGCCGATTTTTTCCCGATCAC 1899
Query 1904 --G-A---TTGATTGAGGAAGACGATTCGTGGTGGTTCGTGCGATATTCTTTTAGCTCGG 1957
| | |||||||||||||||||||| |||||||||||||||||||||||||| ||||
Sbjct 1900 CCGGAAGATTGATTGAGGAAGACGATTCATGGTGGTTCGTGCGATATTCTTTTAGTTCGG 1959
Query 1958 -TTTTAATCTGATCATTTTT-CAAA-TCTTTTGGAGTAAATATATATTCGTTT----T-A 2009
||||||||||||||||||| |||| ||||||||||||||||||||||||||| | |
Sbjct 1960 GTTTTAATCTGATCATTTTTTCAAAATCTTTTGGAGTAAATATATATTCGTTTCAACTGA 2019
Query 2010 ------------C--A--TGTTTTTACGATATACGTGGGAAGTAGACTAGTGAGGTTATA 2053
| | ||||||||||||||||||| |||||||| |||||||||||||
Sbjct 2020 GGTTATTTTTTTCTTACATGTTTTTACGATATACGTGAGAAGTAGAATAGTGAGGTTATA 2079
Query 2054 AGATATGATTCTTTGATTCGTTTTATTTGGGCTGTAATTATATATTACAGAGTT 2107
|||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 2080 AGATATGATTCTTTGATTCGATTTATTTGGGCTGTAATTATATATTACAGAGTT 2133
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 104467334145
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5