BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg483579
Length=1390
Score E
Sequences producing significant alignments: (Bits) Value
AT2G44520.1 | Symbols: COX10 | cytochrome c oxidase 10 | chr2:1... 1947 0.0
> AT2G44520.1 | Symbols: COX10 | cytochrome c oxidase 10 | chr2:18379564-18381942
FORWARD LENGTH=1603
Length=1603
Score = 1947 bits (1054), Expect = 0.0
Identities = 1222/1301 (94%), Gaps = 20/1301 (2%)
Strand=Plus/Plus
Query 1 GATGTGGCGAACATCTGTTGTGTCTCGTTTCTCTTCAAGGATCTCTGTTTCTTCTTCGTT 60
||||||||||| ||||||||| | ||||||||||||||| ||||||||||||||||||||
Sbjct 96 GATGTGGCGAAGATCTGTTGTTTATCGTTTCTCTTCAAGAATCTCTGTTTCTTCTTCGTT 155
Query 61 ACCAAACCCTAGACTGATTCCTTGGTCCCGCGAATTATGTGCCGTTAATAGCTTTTCCCA 120
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 156 ACCAAACCCTAGACTGATTCCTTGGTCCCGCGAATTATGTGCCGTTAATAGCTTCTCCCA 215
Query 121 GCCTCCGGTCTCGTCTGAATCAACTCCTAAGTTAGGGATCACTGGTGTTAGATCCGATGC 180
||||||||||||| | ||||||||| |||||||||||||||||||||||||||| |||||
Sbjct 216 GCCTCCGGTCTCGACGGAATCAACTGCTAAGTTAGGGATCACTGGTGTTAGATCTGATGC 275
Query 181 CAATCGAGTTTTTGCCACTGCTACTG-TG--G---CAGCCACAGCTACCACCGGTGAGAT 234
|||||||||||||||||||||||||| | | |||| ||||||||||||||||||||
Sbjct 276 CAATCGAGTTTTTGCCACTGCTACTGCCGCCGCTACAGCTACAGCTACCACCGGTGAGAT 335
Query 235 TTCGTCTAGAGTTGCGGCGGTGGCTGGATTAGGGCATCACTACGCTCGTTGTTATTGGGA 294
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 336 TTCGTCTAGAGTTGCGGCTTTGGCTGGATTAGGGCATCACTACGCTCGTTGTTATTGGGA 395
Query 295 GCTTTCTAAAGCTCGACTTAGTATGCTTGTGGTTGCGACTTCTGGAACTGGGTATATTCT 354
||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 396 GCTTTCTAAAGCTAAACTTAGTATGCTTGTGGTTGCAACTTCTGGAACTGGGTATATTCT 455
Query 355 GGGTACGGGAAATGCTGCAATTAGCTTCCCGGGGCTTTGTTATACTTGTGCTGGAACCAT 414
|||||||||||||||||||||||||||||||||||||||||| || ||||| ||||||||
Sbjct 456 GGGTACGGGAAATGCTGCAATTAGCTTCCCGGGGCTTTGTTACACATGTGCAGGAACCAT 515
Query 415 GATGATTGCTGCTTCTGCTAATTCCTTGAATCAGATTTTTGAGATAAGCAATGATGCTAA 474
|||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 516 GATGATTGCTGCATCTGCTAATTCCTTGAATCAGATTTTTGAGATAAGCAATGATTCTAA 575
Query 475 GATGAAGAGAACAATGTTAAGGCCATTGCCTTCAGGACGTATTAGTGTTCCACACGCTGT 534
|||||| ||||| ||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 576 GATGAAAAGAACGATGCTAAGGCCATTGCCTTCAGGACGTATTAGTGTTCCACACGCTGT 635
Query 535 TGCATGGGCCACTATTGCTGGTGCTTCTGGTGCTTGTTTGTTGGCTAGCAAGACTAATAT 594
||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 636 TGCATGGGCTACTATTGCTGGTGCTTCTGGTGCTTGTTTGTTGGCCAGCAAGACTAATAT 695
Query 595 GTTGGCTGCTGGACTTGCATCTGCCAATCTTGTACTTTATGCGTTTGTTTATACTCCGTT 654
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 696 GTTGGCTGCTGGACTTGCATCTGCCAATCTTGTACTTTATGCGTTTGTTTATACTCCGTT 755
Query 655 GAAGCAACTTCACCCTATCAATACATGGGTTGGTGCTGTTGTTGGTGCTATCCCTCCCTT 714
||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||
Sbjct 756 GAAGCAACTTCACCCTATCAATACATGGGTTGGCGCTGTTGTTGGTGCTATCCCACCCTT 815
Query 715 GCTTGGGTGGGCTGCAGCGTCTGGTCAGATTTCATTCAATTCGATGATTCTTCCAGCTGC 774
|||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 816 GCTTGGGTGGGCGGCAGCGTCTGGTCAGATTTCATACAATTCGATGATTCTTCCAGCTGC 875
Query 775 TCTTTACTTTTGGCAGATACCTCATTTTATGGCCCTAGCACATCTCTGCCGCAATGATTA 834
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 876 TCTTTACTTTTGGCAGATACCTCATTTTATGGCCCTTGCACATCTCTGCCGCAATGATTA 935
Query 835 TGCAGCTGGAGGTTACAAGATGCTGTCGCTCTTTGATCCATCAGGGAAGAGAATAGCAGC 894
|||||||||||||||||||||| |||| ||||||||||| ||||||||||||||||||||
Sbjct 936 TGCAGCTGGAGGTTACAAGATGTTGTCACTCTTTGATCCGTCAGGGAAGAGAATAGCAGC 995
Query 895 TGTGGCTCTTAGGAACTGCTTTTACATGGTCCCTCTCGGTTTCATCGCCTACGACTGGGG 954
|||||||| |||||||||||||||||| |||||||||||||||||||||| ||||||||
Sbjct 996 AGTGGCTCTAAGGAACTGCTTTTACATGATCCCTCTCGGTTTCATCGCCTATGACTGGGG 1055
Query 955 ATTAACCTCAAGCTGGTTTTGCGTTGAATCAACACTTCTTACACTAGCAATCGCTGCAAC 1014
||||||||||| ||||||||| | |||||||||||||| ||||||||||||||||||||
Sbjct 1056 GTTAACCTCAAGTTGGTTTTGCCTCGAATCAACACTTCTCACACTAGCAATCGCTGCAAC 1115
Query 1015 AGCATTTTCATTCTATCGAGACCGAACCATGCAAAAAGCAAGGAAGATGTTCCATGCGAG 1074
||||||||||||||| |||||||| |||||||| ||||||||||| ||||||||||| ||
Sbjct 1116 AGCATTTTCATTCTACCGAGACCGGACCATGCATAAAGCAAGGAAAATGTTCCATGCCAG 1175
Query 1075 TCTTCTCTTCCTTCCTGTTTTCATGTCTGGTCTTCTTCTACACCGTATCTCTAATGATAA 1134
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1176 TCTTCTCTTCCTTCCTGTTTTCATGTCTGGTCTTCTTCTACACCGTGTCTCTAATGATAA 1235
Query 1135 CCAGCAACAACTCATAGAAGAAGCCGGTTTATCAAAT---G-A-------A-GT-AAAAC 1181
|||||||||||| ||||||||||||| ||| ||||| | | | || |||||
Sbjct 1236 TCAGCAACAACTCGTAGAAGAAGCCGGATTAACAAATTCTGTATCTGGTGAAGTCAAAAC 1295
Query 1182 CTCTCAGGCGAAAGAAACGTGTGGCTCAACCTCCGGTGGCTTATGCTTCTGCTGCACCGT 1241
|| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1296 -TCAGAGGCGAAAGAAACGTGTGGCTCAACCTCCGGTGGCTTATGCCTCTGCTGCACCGT 1354
Query 1242 TTCCTTTCCTTCCAGCTCCTTCCTTCTATTCTCCATAATAA 1282
|||||||||| ||||||||||||||||| ||||||| ||||
Sbjct 1355 TTCCTTTCCTCCCAGCTCCTTCCTTCTACTCTCCATGATAA 1395
Score = 152 bits (82), Expect = 8e-36
Identities = 105/115 (91%), Gaps = 5/115 (4%)
Strand=Plus/Plus
Query 1280 TAA-TTTAATCTTTGGTTAATAATGAAGTGGAGAACGCATAAAAGTTTATGT-TTTTTA- 1336
||| ||||||||||||||||||||||||||||||||||||| |||||||||| |||||
Sbjct 1457 TAAGTTTAATCTTTGGTTAATAATGAAGTGGAGAACGCATACAAGTTTATGTATTTTTTC 1516
Query 1337 --ATCTCCACATAATTGTAttttttttCTAAGCATGTTTCATATGATACAAAATA 1389
||||||||||||||||||||||| |||||| |||||||| |||||||||||||
Sbjct 1517 TCATCTCCACATAATTGTATTTTTTCTCTAAGTATGTTTCAAATGATACAAAATA 1571
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 68473543380
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5