BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg483580
Length=650
Score E
Sequences producing significant alignments: (Bits) Value
AT2G44525.1 | Symbols: | Protein of unknown function (DUF498/D... 1035 0.0
AT3G60150.1 | Symbols: | Protein of unknown function (DUF498/D... 545 1e-154
> AT2G44525.1 | Symbols: | Protein of unknown function (DUF498/DUF598)
| chr2:18382070-18383513 FORWARD LENGTH=766
Length=766
Score = 1035 bits (560), Expect = 0.0
Identities = 621/651 (95%), Gaps = 2/651 (0%)
Strand=Plus/Plus
Query 1 GTCTCGACGGCTGTGAAAATCGG-AAATCAGGATTGAGGACATTGAGCTGCCGCGAAGAT 59
||||||||||||| | ||||||| |||||| |||||||||| |||||||||| |||||||
Sbjct 3 GTCTCGACGGCTGCGGAAATCGGAAAATCACGATTGAGGACTTTGAGCTGCCACGAAGAT 62
Query 60 GGCGATGAGGTTGAAATCAATGGCGACTTTGCCGAAATTGATTCAAAGTATGAGAAAAGA 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 63 GGCGATGAGGTTGAAATCAATGGCGACTTTGCCGAAATTGATTCAAAGTATGAGAAAAGA 122
Query 120 AGTTCCGAAGCATTCGAATCTTGTTTTGCCATCGCTAAGAAGAGCTTTCTCTCTCTATGA 179
||||||||||||||| |||| ||||||||| || || ||| ||||||| || ||||||||
Sbjct 123 AGTTCCGAAGCATTCTAATCCTGTTTTGCCCTCTCTGAGACGAGCTTTTTCCCTCTATGA 182
Query 180 TCAGATCAATCTCATAGACAATGTTCCTGAAGACCAGCTTCGCTTCCAAGAATTTAATGA 239
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 183 TCAGATCAATCTCATTGACAATGTTCCTGAAGACCAGCTTCGCTTCCAAGAATTTAATGA 242
Query 240 TACGAGTTTCACTGTGAATGGGGTCAAATACGAAGGTAGCTTACTCTGTGTTGGGAATTT 299
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
Sbjct 243 TACGAGTTTCACTGTGAATGGAGTCAAATACGAAGGTAGCTTACTCTGTGTTGGGAATCT 302
Query 300 GTTAATGTCATGGAGTCCTCGTAAATTCTCTGAGATCACCACTGATAGCTTGTCTATCTT 359
||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||
Sbjct 303 GTTAATGTCATGGAGTCCTCGTAAATTTTCAGAGATCACCACTGATAGCTTGTCTATCTT 362
Query 360 CCAGACAGTTCGACCTATTCCAGAGCTCTTGATTGTTGGTTGTGGAAGAGACATTCACCC 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 363 CCAGACAGTTCGACCTATTCCAGAGCTCTTGATTGTTGGTTGTGGAAGAGACATTCACCC 422
Query 420 GGTAACTCCCGAAGTCCGTCAGTTTGTGAAGTCCCTTGGCATGAAACTTGAAACAGTTGA 479
|||||||||||| |||||||||||||| |||||||||||||||||||| |||||||||||
Sbjct 423 GGTAACTCCCGAGGTCCGTCAGTTTGTCAAGTCCCTTGGCATGAAACTAGAAACAGTTGA 482
Query 480 TTCTAGAAATGCTGCATCAACTTACAACATTCTGAATGAAGAAGGAAGAGTCGTTGCTGC 539
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 483 TTCTAGAAATGCTGCATCAACGTACAACATTCTGAATGAAGAAGGAAGAGTCGTTGCTGC 542
Query 540 GGCATTGCTTCCATATGGAGTTACATCCTAAAGAAAACTAACAACTCGAAGTTCCATCTT 599
||||||||||||||||||||||||||||||||||||||||||||||||| | || |||
Sbjct 543 GGCATTGCTTCCATATGGAGTTACATCCTAAAGAAAACTAACAACTCGA-GCTCTGGCTT 601
Query 600 TCTAAGCTGTAAATGATTTTTGAGACCTTCCGAAAATAAACCGAATTTCAT 650
||||| ||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 602 TCTAAACTGTAAATGGTTTTTGAGACCTTCCGAAAATAAACCGAATTTCAT 652
> AT3G60150.1 | Symbols: | Protein of unknown function (DUF498/DUF598)
| chr3:22222105-22223512 FORWARD LENGTH=722
Length=722
Score = 545 bits (295), Expect = 1e-154
Identities = 458/537 (85%), Gaps = 9/537 (2%)
Strand=Plus/Plus
Query 54 GAAGATGGCGA-TGAGGTTGAAATCAATGGCGACTTTGCCGAAATTGATTCAAAGTATGA 112
||||||||| | |||| ||| |||||||||| ||||||||| |||||||||| ||||
Sbjct 44 GAAGATGGC-AGTGAGACAAAAAGCAATGGCGACGTTGCCGAAACTGATTCAAAGCATGA 102
Query 113 GAAAAGAAGTTCCGAAGCATTCGAATCTTGTTTTGCCATCGCTAAGAAGAGCTTTCTCTC 172
|||| |||||| ||||||| | | |||||| || ||||| || ||||||||||||||||
Sbjct 103 GAAACGAAGTTACGAAGCAGCCCAGTCTTGTCTTACCATCTCTCAGAAGAGCTTTCTCTC 162
Query 173 TCTATGATCAGATCAATCTCATAGACAATGTTCCTGAAGACCAGCTTCGCTTCCAAGAAT 232
|||| ||||||||||||||||| || || |||||||| || ||||| || || || || |
Sbjct 163 TCTACGATCAGATCAATCTCATCGATAACGTTCCTGAGGATCAGCTCCGATTTCAGGAGT 222
Query 233 TTAATGATACGAGTTTCACTGTGAATGGGGTCAAATACGAAGGTAGCTTACTCTGTGTTG 292
|| |||| ||||||||||||||||||||||| ||||||||||| ||||| ||||||||||
Sbjct 223 TTGATGAGACGAGTTTCACTGTGAATGGGGTTAAATACGAAGGAAGCTTGCTCTGTGTTG 282
Query 293 GGAATTTGTTAATGTCATGGAGTCCTCGTAAATTCTCTGAGATCACCACTGATAGCTTGT 352
|||||||| ||||||||||||| |||||| | ||||| || ||||| || ||||||||||
Sbjct 283 GGAATTTGCTAATGTCATGGAGCCCTCGTTACTTCTCCGACATCACAACGGATAGCTTGT 342
Query 353 CTATCTTCCAGACAGTTCGACCTATTCCAGAGCTCTTGATTGTTGGTTGTGGAAGAGACA 412
| ||||||||||| |||||||| |||||||||||||||||||| || ||||||||| |||
Sbjct 343 CAATCTTCCAGACGGTTCGACCAATTCCAGAGCTCTTGATTGTCGGGTGTGGAAGATACA 402
Query 413 TTCACCCGGT-AACTCCCGAAGTCCGTCAGTTTGTGAAGTCCCTTGGCATGAAACTTGAA 471
||||| | || |||| ||||||||||||| || ||||| | |||||||| || |||
Sbjct 403 ACCACCCACTGAA-TCCCCAAGTCCGTCAGTTCGTAAAGTCAATCGGCATGAAGCTAGAA 461
Query 472 ACAGTTGATTCTAGAAATGCTGCATCAACTTACAACATTCTGAATGAAGAAGGAAG-AGT 530
|| ||||||||||||||||||||||||||||||||||| || ||||| ||||| || | |
Sbjct 462 ACTGTTGATTCTAGAAATGCTGCATCAACTTACAACATACTCAATGAGGAAGGCAGGA-T 520
Query 531 CGTTGCTGCGGCATTGCTTCCATATGGAGTTACATCCTAAAGAAAACT-AACAACTC 586
||| ||||| ||||||||||| |||||||||||||| ||| |||| || |||| |||
Sbjct 521 CGTGGCTGCTGCATTGCTTCCTTATGGAGTTACATCGTAA-GAAA-CTCAACACCTC 575
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31396341875
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5