BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg483588
Length=1372
Score E
Sequences producing significant alignments: (Bits) Value
AT2G44580.1 | Symbols: | zinc ion binding | chr2:18401878-1840... 2049 0.0
> AT2G44580.1 | Symbols: | zinc ion binding | chr2:18401878-18403416
REVERSE LENGTH=1368
Length=1368
Score = 2049 bits (1109), Expect = 0.0
Identities = 1281/1364 (94%), Gaps = 11/1364 (1%)
Strand=Plus/Plus
Query 16 TGGGAG-AATTGAAGGAGCTAAAGCAGTCATAAATCTCAAACCTGGTTCTTCAG-TACCA 73
||| || ||||| ||||||| ||||||| |||||||||||| |||| | ||| | |||||
Sbjct 6 TGGAAGAAATTGGAGGAGCTGAAGCAGTGATAAATCTCAAATCTGGATATTC-GCTACCA 64
Query 74 ATTTCGTATCACCCATGTTTTGGACCTCATGAGGATCTACTTCTTCTTGAAGCTGATGAC 133
||||| ||||||||||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 65 ATTTCTTATCACCCATGTTTTGGGCCTCACGAGGATCTACTTCTTCTTGAAGCTGATGAC 124
Query 134 AAACTCGTCTCTGATATCTTCCATGAAAGGGTGACATTGAGAGGACTTCCTGATGAAGAT 193
|||||||||||||||||||| ||| ||||||| |||||||||||||||||||||||||||
Sbjct 125 AAACTCGTCTCTGATATCTTTCATCAAAGGGTAACATTGAGAGGACTTCCTGATGAAGAT 184
Query 194 GCTGTTCTTTGCACCGAGTCTAAGACTTATGCTATCAAATTTGTTGGTAATTCTAATTCC 253
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 185 GCTGTTCTTTGCACCAAGTCTAAGACTTATGCTATCAAATTTGTTGGTAATTCTAATTCC 244
Query 254 ATGTTCCTTATTCCTCCTTCCATTTGTCCTGGAGATGCGCAAGTTTCTGATACCAACAAC 313
|||||||||||||||||||| |||| |||||||||||| |||||||||||||||||||||
Sbjct 245 ATGTTCCTTATTCCTCCTTCAATTTTTCCTGGAGATGCACAAGTTTCTGATACCAACAAC 304
Query 314 AACGTATCGGTTCTCAAACTTGCTCCTGGTAATATGGAACTTGTGGAGGTTTCTCCTAGA 373
|| ||||||||||||||| | ||||||||||||||||||||||| |||| |||||||||
Sbjct 305 AATGTATCGGTTCTCAAAATCGCTCCTGGTAATATGGAACTTGTTGAGGCTTCTCCTAGG 364
Query 374 CTTGACAAACTTAAGGAGATTCTCTTGGCAAATCCTTTTGGTGCTGGTGAAGTTGAAGCT 433
||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 365 CTTGATAAACTTAAGCAGATTCTCTTGGCAAATCCTTTTGGTGCTGGTGAAGTTGAAGCT 424
Query 434 atgatgga---tgatgatgatgatTTAGACCATAATGGGAAGAGGGATCTTGCGTTGTAT 490
|||||||| |||| ||||||| |||||||||| |||||||| ||||| ||||||||
Sbjct 425 ATGATGGATGTTGATAATGATGACTTAGACCATAGTGGGAAGAAAGATCTAGCGTTGTAC 484
Query 491 ACATGGACCGATTTGGTTAACACGGTACAAGCGAGTGATGAGGAGTTACGCAATGGCTTG 550
|| |||| |||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 485 ACTTGGAGCGATTTGGTTAACACGGTTCAAGCGAGTGATGAGGAGTTACGCAATGGCTTG 544
Query 551 CAGAGTCTTTCTGCTATTGAGATTGATGGTTAT-TGGAGGGTTATAGATGAGAATTACCT 609
||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||
Sbjct 545 CAGAGTCTTTCTGCTATTGAGATTGATGGTT-TCTGGAGGGTTATAGATGAGAATTACCT 603
Query 610 AGACGTGATTCTGAGAATGCTCCTTCATAACTGTGTATTGAAAGATTGGTCGTTTGATGA 669
||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct 604 AGACGTGATTCTGAGAATGCTTCTTCATAACTGTGTATTGAAAGATTGGTCATTTGATGA 663
Query 670 TCTCGATGAAGATGAAGTTGTGGATGCGTTAGTAGCTGATGAGTTTCCTAGTCAACTAGC 729
||| |||||||||||||||||| |||| || |||||||||||||||||||||||||||||
Sbjct 664 TCTTGATGAAGATGAAGTTGTGAATGCTTTGGTAGCTGATGAGTTTCCTAGTCAACTAGC 723
Query 730 GGGTCACTGCTTGCGCGTGTTTGGCTCTAAAGTTAACGAAACTGATAAGTGGAAGTTGGA 789
| ||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||
Sbjct 724 GAGTCACTGCTTGCGTGTGTTTGGCTCTAAAGTTAATGAAACTGATAAGTGGAAGTTGGA 783
Query 790 ACCGAGGCTTGTATGTTTGCATTTTGCTAGACAGATACTGAGAGAAGAAAAGATGAGACT 849
|||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 784 ACCGAGGCTTGTGTGTTTGCACTTTGCTAGACAGATACTGAGAGAAGAAAAGATGAGACT 843
Query 850 TGAGAGTTTCATGGAAGAGTGGAAGAAGAAGATTCCAGATGGGATGGAAGAAAGATTCGA 909
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 844 AGAGAGTTTCATGGAAGAGTGGAAGAAGAAGATACCAGATGGGATGGAAGAAAGATTCGA 903
Query 910 GATGCTTGAAGGAGAGGTTTTAACAGAGAAAATCGGGATCGAAACACGGGTTTATACATT 969
|||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| ||
Sbjct 904 GATGCTTGAAGGAGAGGTTTTAACAGAGAAAATCGGGATCGAGACACGGGTCTATACGTT 963
Query 970 CAGTGTACGCTCTCTGCCTTCAACTCCAGCAGAACGGTTTTCAGTACTCTTTAAACATAG 1029
||||| |||||||||||||||||||||| |||| |||||||||||||||||||||||||
Sbjct 964 TAGTGTGCGCTCTCTGCCTTCAACTCCAGAAGAAAGGTTTTCAGTACTCTTTAAACATAG 1023
Query 1030 ATCAAAATGGGAATGGAAAGACTTAGAGCCATACCTAAGGGATCTTCATGTTCCTAGACT 1089
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1024 ATCAAAATGGGAATGGAAAGACTTAGAGCCTTACCTAAGGGATCTTCATGTTCCTAGACT 1083
Query 1090 TTCCATGGAAGGTTTGCTTCTGAAATACACACGCAGAGCACAACCTAAAGCTGATGCACC 1149
|| |||||||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1084 ATCTATGGAAGGGTTACTTCTGAAATACACACGCAGAGCACAACCTAAAGCTGATGCACC 1143
Query 1150 ACCTGTCTTTAGTGCAAGATAAGATAGCTTCTCTATTTCTAAA-CCGTTTGGCTTCTTTG 1208
||||||||||||||||||||||||||| ||||||||||||||| || || || |||||||
Sbjct 1144 ACCTGTCTTTAGTGCAAGATAAGATAGTTTCTCTATTTCTAAAACC-TTCGGTTTCTTTG 1202
Query 1209 TTTTGTGTTATTTGTTGATGTTAGAAGTGAAATTACAGGTCACAGATCATCCAGTTTCTT 1268
|||||||||||||| | || ||||||||||||||||||||||||||||||||||||||||
Sbjct 1203 TTTTGTGTTATTTGAT-ATTTTAGAAGTGAAATTACAGGTCACAGATCATCCAGTTTCTT 1261
Query 1269 ACCTAATTGTTTAAAGCTATATTTATTGGCTGGGCCCAAAATTGAAGAGATTAGGCCCTG 1328
| ||||||| ||||| |||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1262 AACTAATTGGTTAAAACTATATTTATTGGCTGGGCCCAAAATTGAAGAGAATAGGCCCTG 1321
Query 1329 GATCTGGTTGTCTTTTTAGGCCTTGTCTTTGTCATGTCTCGTAA 1372
|||||||||||||| |||||||| ||||||||||||||| ||||
Sbjct 1322 GATCTGGTTGTCTTGTTAGGCCTAGTCTTTGTCATGTCTAGTAA 1365
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 67569933570
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5