BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg483592
Length=1265
Score E
Sequences producing significant alignments: (Bits) Value
AT2G44600.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 983 0.0
AT3G60200.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 147 3e-34
> AT2G44600.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: plasma membrane; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT3G60200.1); Has 56
Blast hits to 55 proteins in 11 species: Archae - 0; Bacteria
- 0; Metazoa - 2; Fungi - 0; Plants - 52; Viruses - 0; Other
Eukaryotes - 2 (source: NCBI BLink). | chr2:18408695-18410053
FORWARD LENGTH=1359
Length=1359
Score = 983 bits (532), Expect = 0.0
Identities = 614/652 (94%), Gaps = 12/652 (2%)
Strand=Plus/Plus
Query 457 ATCATCGTCGTCGGAAAAAGTCTTCGAATCAGACAGATCGTTCAAGAAGAAGAAAAGCGG 516
||||||||| |||||||||||||||||||||||||||||||| |||||||| ||||||||
Sbjct 441 ATCATCGTCATCGGAAAAAGTCTTCGAATCAGACAGATCGTTTAAGAAGAAAAAAAGCGG 500
Query 517 TTTATCTAGATTCTCAAGCTTCTTCAGAACGAGATCTGACGATTACGATTCGCGACGCGA 576
||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||
Sbjct 501 TTTATCTAGATTCTCTAGCTTCTTCAGAACGAGATCTGACGATTACGATTCGCGTCGCGA 560
Query 577 TTCATGCGATGCGTCCAC-G--TTTTCTCAATCGTCTTCGTCGACGACTTCACGGTCATG 633
||||||||| || ||||| | ||||||||| |||| ||| |||||||||||||||||||
Sbjct 561 TTCATGCGACGCCTCCACGGTTTTTTCTCAACCGTCGTCGGCGACGACTTCACGGTCATG 620
Query 634 GTTTTCGAAAGTTCTAACAGTTCGATCGAAGAAACAATCAACCACCACTACTTGCTACAT 693
||||||||| ||| || |||||||||||||||||||||||||||||| ||||||||||||
Sbjct 621 GTTTTCGAAGGTTATATCAGTTCGATCGAAGAAACAATCAACCACCAATACTTGCTACAT 680
Query 694 CGAGGATTTGATCGCTTCCGAATCCG------ATCATC---ATCAAAATCGACCTAGACA 744
||| |||||||||||||||||||||| |||||| |||||||||||||||||||
Sbjct 681 CGAAGATTTGATCGCTTCCGAATCCGATCATCATCATCATAATCAAAATCGACCTAGACA 740
Query 745 GAGATATTGTAGAGGAATGTCGCCGGCGGGAGATTCAGCGGCGAACGATGAATCAGTTGA 804
||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||
Sbjct 741 GAGATATTGTAGAGGAATGTCGCCGGCGGGAGATTCAACGACGAACGATGAATCAGTTGA 800
Query 805 GGAATCTCCAGGGAGATTAAGAAGAACCCCGGTGATAGGAACTCCGGGAAGGAAAAAGAC 864
||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||
Sbjct 801 GGAATCTCCAGGGAGATTAAGAAGAACGCCGGTGATGGGAACTCCGGGAAGGAAAAAGAC 860
Query 865 GGCGACGATTGGGATTGGTAGAAGTGTATCAGGGATGGCTTTTTGCTTGAGTCCATTAGT 924
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 861 GGCGACGATTGGGATTGGTAGAAGTGTATCAGGGATGGCTTTTTGCTTAAGTCCATTAGT 920
Query 925 GAGAGCTAAACCTAACTGTTCGTCTAATTGGAAAGCGAAATTTCCGCCGGATTTTGGATA 984
||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct 921 GAGAGCTAAACCTAACTGTTCTTCTAACTGGAAAGCGAAATTTCCGCCGGATTTTGGATA 980
Query 985 TTCCGGCGAATTGAAGTCTCCGGCGAAGCCTCATCTTTCAACGGCGGCGTCTTTTTGCGG 1044
|||||| |||||||| ||||||||||||||||| || |||||||||||||||||||||||
Sbjct 981 TTCCGGTGAATTGAAATCTCCGGCGAAGCCTCACCTATCAACGGCGGCGTCTTTTTGCGG 1040
Query 1045 TAACCGGTCTAAGAAGCTTGTGGATTTAGGTAGAGTTGATCACCGCCGTTGA 1096
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1041 TAACCGGTCTAAGAAGCTTGTGGATTTAGGTAGAGTTGATCACCGCCGTTGA 1092
Score = 656 bits (355), Expect = 0.0
Identities = 418/445 (94%), Gaps = 17/445 (4%)
Strand=Plus/Plus
Query 1 ACTCCGGCGATTCTCTTCTCATTAGATCctctctctctctctctcAAAAAGAGAAAATCT 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ACTCCGGCGATTCTCTTCTCATTAGATCCTCTCTCTCTCTCTCTCAAAAAGAGAAAATCT 60
Query 61 CAGAGCCAGAAGAAGACAAATATATCTTTTTTATTCCTCAGATCTCTGAAATCGAAGTTT 120
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 61 CAGAGCCAGAAGAAGACAAATATATCTTTTCTATTCCTCAGATCTCTGAAATCGAAGTTT 120
Query 121 CTCAAA--GT---GTTTTGTTTTT---CCGATGAGGTGTAAGAGACACACAGTAGATTTC 172
||| || || ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 121 CTCGAACTGTTTTGTTTTGTTTTTTTTCCGATGAGGTGTAAGAGACACACAGTAGATTTC 180
Query 173 AGTAGCAGTATCGGCGTTTGTGCTTCTTGTCTCCGTGAACGACTCTTTTCTCTCGCCGTT 232
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 181 AGTAGCAGTATCGGCGTTTGTGCTTCTTGTCTCCGTGAACGACTCTTTACTCTCGCCGTT 240
Query 233 TCAACCGCCGCGTCTGAAAACGACGATAACGATCATCGTCATTCTCGGATTTCTCCACCT 292
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 241 TCAACCGCCGCGTCTGAAAACGACGATAACGATCATCGTCATTCTCGTATTTCTCCACCT 300
Query 293 CCTCTGCTTTTTCCTCGTTCTGTTTCTCCTTACGTTGCTCCGAGAAAATCCGACGCCGGA 352
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 301 CCTCTGCTTTTTCCTCGTTCTGTTTCTCCTTACGTTGCTCCTAGAAAATCCGACGCCGGA 360
Query 353 ACCGGA---GGAG--G-AGGA-GATTCT--GTAGCTTCTTCTAATAACCGATTCTTCGCA 403
|||||| |||| | |||| || || ||||||||||||||||||||||||||||||
Sbjct 361 ACCGGAACCGGAGCTGGAGGAAGAGACTCCGTAGCTTCTTCTAATAACCGATTCTTCGCA 420
Query 404 ACGCCGCAAGTTGTTGATCATTCAT 428
||||||||||| |||| ||| ||||
Sbjct 421 ACGCCGCAAGTGGTTGTTCAATCAT 445
Score = 243 bits (131), Expect = 4e-63
Identities = 166/180 (92%), Gaps = 13/180 (7%)
Strand=Plus/Plus
Query 1097 ATATGGTGGTGGCTTTACTATACCAACAGATAAAGAGTGAATTTACTTCtttttttAGTT 1156
||||||| |||||||||||||||||||||||||||||||||||||||| ||||||| |||
Sbjct 1161 ATATGGT-GTGGCTTTACTATACCAACAGATAAAGAGTGAATTTACTT-TTTTTTTGGTT 1218
Query 1157 ATT--T-A---TAT-T-ATAATGTTTTGTGATTGTATATTAAAGGAAGAAATATTCGTTT 1208
||| | | ||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1219 ATTCATTACAGTATATTATAATGTTTTGTGATTGTATATTAAAGGAAGAAATATTCGTTT 1278
Query 1209 TTATATTTAGGAGATTAGAAGA-A-CAATGTCGTGTGTTT-CTTTTTCTTTGGATAGTCT 1265
|||||||||||||||||||||| | ||||||||||||||| |||||||||||||||||||
Sbjct 1279 TTATATTTAGGAGATTAGAAGAGAACAATGTCGTGTGTTTTCTTTTTCTTTGGATAGTCT 1338
> AT3G60200.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT2G44600.1);
Has 60 Blast hits to 60 proteins in 12 species: Archae - 0;
Bacteria - 0; Metazoa - 8; Fungi - 0; Plants - 51; Viruses
- 0; Other Eukaryotes - 1 (source: NCBI BLink). | chr3:22249257-22250520
FORWARD LENGTH=1264
Length=1264
Score = 147 bits (79), Expect = 3e-34
Identities = 221/288 (77%), Gaps = 15/288 (5%)
Strand=Plus/Plus
Query 816 GGAGATTAAGAAGAACCCCGGTGATAG-GAACTCCGGGAAGGAAAAAGACGGCGACGATT 874
||| ||| || ||||| |||| || | |||||||||||||| |||| | ||||
Sbjct 702 GGA-ATTGAGGAGAACTCCGGCGA-CGAAAACTCCGGGAAGGAGGAAGA--TTG-CGATG 756
Query 875 GGGAT-TGGTAGAAGTGTATCAGGGATGGCTTTTTGCTTGAGTCCATTAGTGAGAGCTAA 933
||||| || || || | || |||||||||||||| |||||||| || ||||||||||
Sbjct 757 GGGATAGGGAAG-AGCATGTCGGGGATGGCTTTTTGTTTGAGTCCGTTGGTGAGAGCTAG 815
Query 934 ACCTAACTGTTCGTCTAATTGGAAAGCGAAATTTCCGCCGGATTTTGGAT-ATTCCGGCG 992
||||||||| ||| ||| ||||| || |||||| |||| ||||| | |||| || |
Sbjct 816 TCCTAACTGTCCGTTTAAACGGAAAATGAGATTTCCATCGGAGTTTGG-TAATTCTGGGG 874
Query 993 AATTGAA-GTC--T-CCGGCGAAGCCTCATCTTTCAACGGCGGCGTCTTTTTGCGGTAAC 1048
| | || | | | |||| ||||||||| | ||| | |||||||| ||||| | ||
Sbjct 875 AGGT-AACGGCGGTGCCGGAAAAGCCTCATATATCAGCAGCGGCGTCGTTTTGTGCAAAT 933
Query 1049 CGGTCTAAGAAGCTTGTGGATTTAGGTAGAGTTGATCACCGCCGTTGA 1096
| || ||||||||||||||||||||||||||||||| ||||||||||
Sbjct 934 AGATCGAAGAAGCTTGTGGATTTAGGTAGAGTTGATCGCCGCCGTTGA 981
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 62198475255
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5