BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg483594
Length=616
Score E
Sequences producing significant alignments: (Bits) Value
AT2G44620.1 | Symbols: MTACP-1, MTACP1 | mitochondrial acyl car... 881 0.0
> AT2G44620.1 | Symbols: MTACP-1, MTACP1 | mitochondrial acyl carrier
protein 1 | chr2:18414251-18415303 FORWARD LENGTH=676
Length=676
Score = 881 bits (477), Expect = 0.0
Identities = 582/628 (93%), Gaps = 26/628 (4%)
Strand=Plus/Plus
Query 1 ATCAAATCCCTAAATCTCGAGCTCGAAG-AAGAAGACGAAAATGGCACTGAGAAATGCAA 59
||||||||||||| |||||||||||||| ||| |||||||||||||||||||||||||||
Sbjct 30 ATCAAATCCCTAATTCTCGAGCTCGAAGAAAG-AGACGAAAATGGCACTGAGAAATGCAA 88
Query 60 TTCTTCGTCACCTGAGGGTTCCGGTGCAAACCCTAGGACTGAATCAGTCTCAAATTGGAT 119
|||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||| |
Sbjct 89 TTCTTCGTCACCTGAGGGTTCCGGTGCAAACCCTAGGATTGAATCAGTCTAAAATTGGGT 148
Query 120 TCCTTGGTTCGATCCGGTCGTTTTCTTCGCACGATGATCATCTCAGCAGAGAAGCTGTCG 179
|||||||| |||||||||| ||||||||||||||||||||||| ||||||||||||||||
Sbjct 149 TCCTTGGTACGATCCGGTCATTTTCTTCGCACGATGATCATCTTAGCAGAGAAGCTGTCG 208
Query 180 TCGATAGAGTTCTCGATGTTGTCAAGAGCTTCCCCAAAGTCGATCCCTCTAAGGTGACTC 239
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 209 TCGATAGAGTACTCGATGTTGTCAAGAGCTTCCCCAAAGTCGATCCCTCTAAGGTGACTC 268
Query 240 CTGAGGTTCATTTCCAAAACGATCTGGGATTAGATAGTTTGGACACAGTGGAGATAGTGA 299
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 269 CTGAGGTTCATTTCCAAAACGATTTGGGATTAGATAGTTTGGACACAGTGGAGATAGTGA 328
Query 300 TGGCTATTGAAGAGGAATTCAAGCTGGAAATCCCAGACAAAGAAGCTGACAAGATCGATT 359
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 329 TGGCTATTGAAGAGGAATTCAAGCTGGAAATTCCAGACAAAGAAGCTGACAAGATCGATT 388
Query 360 CTTGCTCTCTCGCAATTGAATACGTTTACAATCATCCAATGTCTAGCTAAAAGCTGTGTG 419
||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 389 CTTGCTCTCTCGCCATTGAATACGTTTACAATCATCCAATGTCTAGCTAATCGCTGTGTG 448
Query 420 CTCTCTCATGGTTTCTTATTCGGTTTCTTCCCCCttttt-ttGTATGAGGTTCTTCTCTC 478
|||||||||||||||| | ||||| ||||| ||||||||||||||||||||
Sbjct 449 CTCTCTCATGGTTTCT----C-----CTTCC---TTTTTCTTGTATGAGGTTCTTCTCTC 496
Query 479 TT-GATAATG-------GG-ATTTGCAAATAAATTCACTTCTGTTTTGAGAGCATTGTTA 529
|| ||||||| || ||||||||| |||| ||||| | ||| |||||||||||||
Sbjct 497 TTTGATAATGCCATAATGGGATTTGCAAAAAAAT-CACTTTTATTTGGAGAGCATTGTTA 555
Query 530 TTGACTCTTTTAACGGTTCTAGTTTCTTAAAA-GAAAACCTTTTTGCTTGAATCTTGTGA 588
||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||
Sbjct 556 TTGACTCTTTTAACGGTTCCAGTTTCTTAAAAAGAAAACCTTTTTGCTTGAATCTTGTGA 615
Query 589 AAGTTGACACTCTTTCTTGAATTAATAC 616
||||||||||| |||||||| |||||||
Sbjct 616 AAGTTGACACTTTTTCTTGAGTTAATAC 643
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29688380877
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5