BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg483595
Length=1434
Score E
Sequences producing significant alignments: (Bits) Value
AT2G44640.1 | Symbols: | FUNCTIONS IN: molecular_function unkn... 2178 0.0
> AT2G44640.1 | Symbols: | FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
mitochondrion, chloroplast, plasma membrane, plastid, chloroplast
envelope; EXPRESSED IN: 23 plant structures; EXPRESSED
DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein
of unknown function DUF3769 (InterPro:IPR022244); BEST Arabidopsis
thaliana protein match is: pigment defective 320 (TAIR:AT3G06960.1);
Has 49 Blast hits to 48 proteins in 15 species:
Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants
- 48; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).
| chr2:18417243-18419396 FORWARD LENGTH=1732
Length=1732
Score = 2178 bits (1179), Expect = 0.0
Identities = 1339/1413 (95%), Gaps = 24/1413 (2%)
Strand=Plus/Plus
Query 28 aaaggaagaagaagaagaagaaaaTGGCGAATCTTAACTCAGCTATTGATTCAGTGTTTT 87
||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 22 AAA-GAAGAAGAGGAAGAAGAAAATGGCGAATCTTAACTCAGCTATTGATTCAGTGTTTT 80
Query 88 GGGACCAGAACGTTTCTTCACCCCAAACCCTTGAAGGAACGGCTCGCTCTGTTCCCGGTG 147
|||| ||||||||||||||||| |||||||||||||| || |||||||||||||||||||
Sbjct 81 GGGATCAGAACGTTTCTTCACCTCAAACCCTTGAAGGCACTGCTCGCTCTGTTCCCGGTG 140
Query 148 AGCCATTTCCCTTAGACGGAGCACGAGCAAGCCGCTCTCACCGGATTCAACAGCTCTCTC 207
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 141 AGCCATTTCCCTTAGACGGAGCACGAGCAAGCCGCTCTCACCGGATTCAACAGCTCTCTC 200
Query 208 TGCTTCGCGAAGGCTTTCCTCTCGGAATCATTCCTTCTTTTGCTCCTGCTTCTGACAAGA 267
|||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||
Sbjct 201 TGCTTCGCGAAGGCTTTCCTCTTGGAATCATTCCTTCTTTGGCTCCTGCTTCTGACAAGA 260
Query 268 GACTTGGCTCTTTCTCTCTCAATTCTCTCTTGCTCAGTCCTTCCTCTAACAACTGGTGGC 327
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 261 GACTCGGCTCTTTCTCTCTCAATTCTCTCTTGCTCAGTCCTTCCTCTAACAACTGGTGGT 320
Query 328 TAGGATTAGTTGGGCAGTTCAAACCTAAGAAGCTCTTTGCTGATATCAAAGCAGATATTA 387
|||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 321 TAGGTTTAGTTGGGCAGTTCAAACCAAAGAAGCTCTTTGCTGATATCAAAGCAGATATTA 380
Query 388 GCAATGCAGAAGAGTGGGATCTT-CAAGTTGTTAAGGATACAGCTAAACACATTGTTGAC 446
|||||||||||||||||||| || |||||||| ||||||||||| |||||||||||||||
Sbjct 381 GCAATGCAGAAGAGTGGGAT-TTGCAAGTTGTAAAGGATACAGCAAAACACATTGTTGAC 439
Query 447 AAATCCCTTTACTCTATTGGTTTATGGACTCAGATTGCGTTGGGTACTTCTTCTTCTCTC 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 440 AAATCCCTTTACTCTATTGGTTTATGGACTCAGATTGCGTTGGGTACTTCTTCTTCTCTC 499
Query 507 TTGCTTAGCACTGAACGCCTTGGAGATAAAAACGGACTCCGAAACAAGTTGATGTTTGTT 566
||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||
Sbjct 500 TTGCTTAGCACTGAACGTCTTGGAGATAAAAACGGACTCCGAAACAAGTTGATGCTTGTT 559
Query 567 CATCCGCTTGAGAAACATGATCTCACTGTGGAAGCAGCTTGGCCAGATCTGTTTTTGGAT 626
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 560 CATCCGCTTGAGAAACATGATCTCACTGTGGAAGCAGCTTGGCCAGATTTGTTTTTGGAC 619
Query 627 AATAAAGGACGTTTCTGGGATGTTCCTGAATCATTGAATGTTGACGTCTCATCCCTTGTT 686
|||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||
Sbjct 620 AATAAAGGACGTTTCTGGGATGTTCCTGAATCTTTGAATGTTGATGTCTCATCCCTTGTT 679
Query 687 CCAGAATCAGGGCTTCGATACCGGTTTGGCCTACACAAAAGCAGGGGTAATCCTCAGCCT 746
||||| |||||| || ||||||||||||| || || ||||||||||||||||||||||||
Sbjct 680 CCAGAGTCAGGGGTTAGATACCGGTTTGGTCTTCATAAAAGCAGGGGTAATCCTCAGCCT 739
Query 747 GTGAATCCTGCTGGTGCTGGGAGTGGTAGTGATGCTCCTACTTCTTTGATGCCTGGTTTA 806
|||||| ||||||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct 740 GTGAATGCTGCTGGTGTTGAGAGTGGTAGTGATGCTCCTACTTCTTTGATGCCTGGTTTA 799
Query 807 TGCGCCAAGGCTGCAGTTTCGTACAAGGCTAACAGAGACTTGTGGAGGCCACAAGAGAAA 866
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 800 TGCGCCAAGGCTGCAGTTTCGTACAAGGTTAACAGAGACTTGTGGAGGCCACAAGAGAAA 859
Query 867 GAAGACAACACAGAAGA-G-GG-TACACCTAAGTTTCTGCCTTATGATTTACGTCTCAAG 923
|||| |||||||||||| | || || |||| ||||||||||||||||||||||||||||
Sbjct 860 GAAGGCAACACAGAAGAAGAGGATAAACCTGTGTTTCTGCCTTATGATTTACGTCTCAAG 919
Query 924 GAGCCTCATGCAGCAATTTCAGGAATAGTAGGTAGCAGCTTGGCAGCTTGGATCACAGGC 983
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 920 GAGCCTCATGCAGCAATTTCAGGAATAGTAGGAAGCAGCTTGGCAGCTTGGATCACAGGC 979
Query 984 CGAGGCATGTTGGTTAATGGCAAGAAGCGGAGTCCAATAAGCGCAGAAGTATTTGGTTCT 1043
||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct 980 CGAGGCATGTTGGTTAATGGCAAGAAGCGGAGTCCGATAAGCGCAGATGTATTTGGTTCT 1039
Query 1044 GCTTGTTATACGTTCCAAAAAGGGCGGTTTAGTAAGTTGTATGGCGATCTAACCCGAGTA 1103
||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||
Sbjct 1040 GCTTGTTATACGTTCCAAAAAGGACGGTTTAGTAAGTTGTATGGCGATCTTACCCGAGTA 1099
Query 1104 GATGCTCGCGTGGACCTACCCTCAGCTTCTGCCCTCGCTAAAAGAA-TCTTCCATGCATT 1162
|||||||||||||||||||||||||||| |||||| ||||||| || |||||||||||
Sbjct 1100 GATGCTCGCGTGGACCTACCCTCAGCTTTTGCCCTTGCTAAAA-AACTCTTCCATGCA-- 1156
Query 1163 TAGAAGATCGTCAGGTAGTAACAACTCAGACGACACATTGTGGTCTCCTAGACTCAACCT 1222
|| | || || | ||||||||||||||||||||||||||| |||||||||||
Sbjct 1157 -AG----T----AG-TA--A-CAACTCAGACGACACATTGTGGTCTCCCAGACTCAACCT 1203
Query 1223 GATATTCCAGCAACAGGTTGCAGGTCCGATTGTTTTCAAAGTAGACTCGCAGTTTCAGGT 1282
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1204 GATATTCCAGCAACAGGTTGCGGGTCCGATTGTTTTCAAAGTAGACTCGCAGTTTCAGGT 1263
Query 1283 AGGTGCGGCACGCATGGAAGATCTGATATACAGTCTGAATTACTCTTTGAGGCTTCTTGA 1342
||| || ||||||||||||||| |||||||||||||||||||||| ||||||||||||||
Sbjct 1264 AGGAGCTGCACGCATGGAAGATGTGATATACAGTCTGAATTACTCGTTGAGGCTTCTTGA 1323
Query 1343 GTCTGGCAAAGTCGTGGCTTGGTATTCTCCAAAGAGAAAAGAAGGCATGATCGAGCTGCG 1402
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1324 GTCTGGCAAAATCGTGGCTTGGTATTCTCCAAAGAGAAAAGAAGGCATGATCGAGCTCCG 1383
Query 1403 AGTTTTTGAGTTTTGATTT-AGTCTCTTTTTAT 1434
||||||||||||||||||| |||||| |||||
Sbjct 1384 AGTTTTTGAGTTTTGATTTTAGTCTCCGTTTAT 1416
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 70682367360
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5