BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg483599
Length=1355
Score E
Sequences producing significant alignments: (Bits) Value
AT2G44680.1 | Symbols: CKB4 | casein kinase II beta subunit 4 ... 2196 0.0
AT3G60250.1 | Symbols: CKB3 | casein kinase II beta chain 3 | ... 822 0.0
AT5G47080.1 | Symbols: CKB1 | casein kinase II beta chain 1 | ... 412 3e-114
> AT2G44680.1 | Symbols: CKB4 | casein kinase II beta subunit
4 | chr2:18426572-18428357 REVERSE LENGTH=1369
Length=1369
Score = 2196 bits (1189), Expect = 0.0
Identities = 1304/1359 (96%), Gaps = 9/1359 (1%)
Strand=Plus/Plus
Query 1 ACAAGGAAAAGCAGAGCActctttacctcttcttctctctttcttctactctGTGATCAA 60
||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1 ACAGGGAAAAGCAGAGCACTCTTTATCTCTTCTTCTCTCTTTCTTCTACTCTGTGATCAA 60
Query 61 ATTATCGAAAAGAAAAAACAAACCCTAGATTTATCCGCCTCTCTCCTTTCTCTGATGATA 120
| ||||| |||||||||||||||||||||||||||||| |||| ||| |||||||||||
Sbjct 61 ACTATCG--AAGAAAAAACAAACCCTAGATTTATCCGCCCCTCTTCTTCCTCTGATGATA 118
Query 121 AGAAAGTCGAAGACTTTGAGAATCTAAAGCTGAAAAGTTTTGATTTTTTCTTC-TTGAGG 179
|||||||||||||||||||||||||||||||||||| ||||| |||||| ||| ||||||
Sbjct 119 AGAAAGTCGAAGACTTTGAGAATCTAAAGCTGAAAAATTTTG-TTTTTT-TTCATTGAGG 176
Query 180 GAATCGAATCGAGTTATGTACAAGGATCGGAGTGGAGGAGGAATAATGGGTGGTGGTGGA 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 177 GAATCGAATCGAGTTATGTACAAGGATCGGAGTGGAGGAGGAATAATGGGTGGTGGTGGA 236
Query 240 TCATCGAGATCGGAGATCCTTGGTGGAGCTATTGATCGGAAACGAATCAATGATGCTTTA 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 237 TCATCGAGATCGGAGATCCTTGGTGGAGCTATTGATCGGAAACGAATCAATGATGCTTTA 296
Query 300 GACAAACATCTTAAGAAATCTTCACCTTCTACATCTAGGGTTTTCACTTCTAAGGACAAA 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 297 GACAAACATCTTAAGAAATCTTCACCTTCTACATCTAGGGTTTTCACTTCTAAGGACAAA 356
Query 360 GATTCTTTCCCTTCTACTTCTACTGCTAAATCTCAGCTTCATTCTCGTTCACCTGATGTA 419
|||||| ||||||||||||| ||||||||||||||||||||||||||||| || |||||
Sbjct 357 GATTCTGTCCCTTCTACTTCAACTGCTAAATCTCAGCTTCATTCTCGTTCCCCCGATGTT 416
Query 420 GAATCTGAAACGGATAGTGAAGGATCAGATGTGAGTGGTTCAGAAGGTGATGATACATCG 479
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 417 GAATCTGACACGGATAGTGAAGGATCAGATGTGAGTGGTTCAGAAGGTGATGATACCTCT 476
Query 480 TGGATCTCATGGTTTTGTAATTTGAGAGGGAATGAGTTTTTCTGTGAAGTAGATGAAGAT 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 477 TGGATCTCATGGTTTTGTAATTTGAGAGGGAATGAGTTTTTCTGTGAAGTAGATGAAGAT 536
Query 540 TATATACAAGATGATTTTAATCTCTGTGGATTGAGTGGTCAAGTTCCTTACTATGATTAT 599
||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||
Sbjct 537 TATATACAAGATGATTTCAATCTCTGTGGTTTGAGTGGTCAAGTTCCTTACTATGATTAT 596
Query 600 GCACTTGATCTCATTTTAGATGTTGAATCATCAAATGGTGATATGTTTACTGAAGAACAG 659
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 597 GCACTTGATCTCATTTTAGATGTTGAATCATCAAATGGTGATATGTTTACTGAAGAACAG 656
Query 660 AATGAGATGGTGGAATCAGCTGCTGAGATGTTATATGGTCTTATTCATGTTCGTTATATT 719
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 657 CATGAGATGGTGGAATCAGCTGCTGAGATGTTATATGGTCTTATTCATGTTCGTTATATT 716
Query 720 CTCACTACTAAAGGAATGGCTGCTATGATGGAGAAGTATAAGAATTACGATTTCGGGAGA 779
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 717 CTCACTACTAAAGGAATGGCTGCTATGATGGAGAAGTATAAGAATTATGATTTCGGGAGA 776
Query 780 TGTCCCAGAGTTTTCTGTTGTGGGCAATCTTGTCTTCCGGTTGGGCAATCTGATATCCCG 839
|| ||||||||||||||||| || || ||||||||||||||||| |||||||||||||||
Sbjct 777 TGCCCCAGAGTTTTCTGTTGCGGACAGTCTTGTCTTCCGGTTGGCCAATCTGATATCCCG 836
Query 840 AGGTCGAGCACTGTGAAGATATACTGCCCAAAATGCGAGGATATTTACTACCCGCGATCT 899
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 837 AGGTCGAGCACTGTGAAGATATACTGCCCAAAATGCGAGGATATTTACTACCCGCGATCT 896
Query 900 AAATACCAAGGCAACATTGATGGAGCTTACTTTGGAACTACTTTCCCTCATTTGTTTCTC 959
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 897 AAATACCAAGGCAACATTGATGGAGCTTACTTTGGAACTACTTTCCCTCATTTGTTTCTC 956
Query 960 ATGGCCTATGGGAACATGAAACCACAGAAGCCGGTTCAAAACTATGTTCCTAAGATCTTT 1019
||||||||||||||||||||||| |||||||||| ||||||||| |||||||||||||||
Sbjct 957 ATGGCCTATGGGAACATGAAACCGCAGAAGCCGGCTCAAAACTACGTTCCTAAGATCTTT 1016
Query 1020 GGCTTTAAGGTACACAACAAGCAATGATACTCTCTTCTCTCAACAGTCCTGTGGTTGAAT 1079
|||||||||||||||||||| |||||||||||||| |||||||||||| |||||||||||
Sbjct 1017 GGCTTTAAGGTACACAACAAACAATGATACTCTCTCCTCTCAACAGTCTTGTGGTTGAAT 1076
Query 1080 ACAATCTTGGCGGCTCAACCACCATTCTTCTGATGGTCACGGGTTTGAAATGGATGATAC 1139
||||||| || |||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1077 ACAATCTCGGTGGCTAAACCACCATTCTTCTGATGGTCACGGGTTTGAAATGGATGATAC 1136
Query 1140 TAAAATGCGTTTGGAGGATGAGAAGAGCTAAAGAA-AAAGGGTCAACACTTAA--GTTTT 1196
|||| |||||||||||||||||||||||||| ||| ||||| || |||||||| |||||
Sbjct 1137 TAAACTGCGTTTGGAGGATGAGAAGAGCTAATGAAGAAAGG-TCGACACTTAAAAGTTTT 1195
Query 1197 TCACTATGTAATCTCGGAAGTTGTAAGTAGAATCTTCAATATTGAACCGTTCTTTGGTGG 1256
||||||||||||||| ||||| |||||||||||||||| || ||||||||||||| |||
Sbjct 1196 TCACTATGTAATCTCAAAAGTTCTAAGTAGAATCTTCAACATAGAACCGTTCTTTGATGG 1255
Query 1257 GTCTTGGGAAATTCTTTATCTGTGAGTAATCAATTAAATCATTTACCAGATGGATGGAAT 1316
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
Sbjct 1256 GTCTTGGGAAATTCTTTACCTGTGAGTAATCAATTAAATCATTTACCAGATGGATGGATT 1315
Query 1317 TTGCTTTCCTTAACTGTTGTCTATAATTGCTGAGAATTT 1355
||||||| ||||||||||||||||||||||||| |||||
Sbjct 1316 TTGCTTTGCTTAACTGTTGTCTATAATTGCTGAAAATTT 1354
> AT3G60250.1 | Symbols: CKB3 | casein kinase II beta chain 3
| chr3:22270337-22272113 REVERSE LENGTH=1359
Length=1359
Score = 822 bits (445), Expect = 0.0
Identities = 763/907 (84%), Gaps = 59/907 (7%)
Strand=Plus/Plus
Query 163 ATTT-TT-TCTTCTTGAGGGAATCGAATCGAGTTATGTACAAGGATCGGAGTGGAGGAGG 220
|||| || |||| ||| | ||| ||||||| ||||||||||||| || |||||||||||
Sbjct 120 ATTTCTTGTCTTTTTG-GAGAA-GGAATCGAATTATGTACAAGGAACGTAGTGGAGGAGG 177
Query 221 AATAATGGGTGGTGGTGGATCATCGAGATCGGAGATCCTTGGTGGAGCTATTGATCGGAA 280
| |||||| | || ||||||||||| |||||||| ||||||||||||||||||||
Sbjct 178 -----T-GGTGGT-G-GG-TCATCGAGATCAGAGATCCTCGGTGGAGCTATTGATCGGAA 228
Query 281 ACGAATCAATGATGC-TTTAGACAA-ACATCTTA-AGAAATCTTCACCTT------CTAC 331
||||||||| ||||| | | | || | | | || ||||||||||| ||| | ||
Sbjct 229 ACGAATCAACGATGCACTCA-ATAAGA-AAC-TAGAGAAATCTTCAACTTCCACCACCAC 285
Query 332 ATCTAGGGTTTTCACTTCTAAGGACAAAGAT-TCTTTCCCTTCTACTTCTACTGCTAAAT 390
||||||||||||| ||||||| ||||||||| |||| ||||| || |||| |||||
Sbjct 286 ATCTAGGGTTTTCTCTTCTAAAGACAAAGATCCCTTTTCCTTC-ACATCTA---CTAAAA 341
Query 391 CTCAGCTTCATTCTCGTTCACCTGATGTAGAATCTGAAACGGATAGTGAAGGATCAGATG 450
||||||||| || | | || || ||||| ||||| ||||||||||| || ||||
Sbjct 342 CTCAGCTTC---CT-G---A--TG-TG--GAATCGGAAACTGATAGTGAAGGGTCTGATG 389
Query 451 TGAGTGGTTCAGAAGGTGATGATACATCGTGGATCTCATGGTTTTGTAATTTGAGAGGGA 510
||||||| || || ||||||||||| ||||||||||| ||||||||||||||||||||||
Sbjct 390 TGAGTGGATCGGAGGGTGATGATACGTCGTGGATCTCTTGGTTTTGTAATTTGAGAGGGA 449
Query 511 ATGAGTTT-TTCTGTGAAGTAGATGAAGATTATATACAAGATGATTTTAATCTCTGTGGA 569
|||| ||| ||||||||||| |||||||||||||| ||||||||||| ||||| |||||
Sbjct 450 ATGA-TTTCTTCTGTGAAGTCGATGAAGATTATATTCAAGATGATTTCAATCTTTGTGGT 508
Query 570 TTGAGTGGTCAAGTTCCTTACTATGATTATGCACTTGATCTCATTTTAGATGTTGAAT-C 628
|| ||||||||||| ||||||||||||||||||||||||||||||||||||||||| | |
Sbjct 509 TTAAGTGGTCAAGTCCCTTACTATGATTATGCACTTGATCTCATTTTAGATGTTGA-TGC 567
Query 629 ATCAAATGGTGATATGTTTACTGAAGAACAGAATGAGATGGTGGAATCAGCTGCTGAGAT 688
|| || |||| ||||||||||| |||||| |||| |||||||||||||||||||||||
Sbjct 568 TTCCAACAGTGAGATGTTTACTGATGAACAGCATGAAATGGTGGAATCAGCTGCTGAGAT 627
Query 689 GTTATATGGTCTTATTCATGTTCGTTATATTCTCACTACTAAAGGAATGGCTGCTATGA- 747
| ||||||||||||||||||||||||| ||| | |||||||||||||||||||| ||||
Sbjct 628 GCTATATGGTCTTATTCATGTTCGTTACATTTTGACTACTAAAGGAATGGCTGCAATGAC 687
Query 748 TGGAGAAGTATAAGAATTACGATTTCGGGAGATGTCCC-AGAGTTTTCTGTTGTGGGCAA 806
|| ||||||| ||||| | |||||||||||||| ||| |||||||||||||| || ||
Sbjct 688 TG-AGAAGTACAAGAACTGTGATTTCGGGAGATG-CCCGAGAGTTTTCTGTTGCGGTCAG 745
Query 807 TCTTGTCTTCCGGTTGGGCAATCTGATATCCCGAGGTCGAGCACTGTGAAGATATACTGC 866
||||||||||| ||||| ||||| ||||||||||| ||||| ||||||||||||||||||
Sbjct 746 TCTTGTCTTCCAGTTGGACAATCCGATATCCCGAGATCGAGTACTGTGAAGATATACTGC 805
Query 867 CCAAAATGCGAGGATATTTACT-ACCCGCGATCTAAATACCAAGGCAACATTGATGGAGC 925
|| |||||||||||||| | || ||||||||||||||| ||||||||| |||||||||||
Sbjct 806 CCTAAATGCGAGGATATAT-CTTACCCGCGATCTAAATTCCAAGGCAATATTGATGGAGC 864
Query 926 TTACTTTGGAACTACTTTCCCTCATTTGTTTCTC-ATGGCCTATGGGAACATGAAA-CCA 983
||||||||||| || |||||||| ||||| || ||| | || |||||| | ||| ||
Sbjct 865 GTACTTTGGAACCACATTCCCTCACTTGTT-CTTGATGACTTACGGGAACTT-AAAGCCG 922
Query 984 CAGAAGCCGGTTCAAAACTATGTTCCTAAGATCTTTGGCTTTAAGGTACACAACAAGCAA 1043
|||||||| ||||| |||||| || || ||||||||||| ||||||||||| | ||
Sbjct 923 CAGAAGCCTACTCAAAGCTATGTCCCAAAAATCTTTGGCTTCAAGGTACACAA-AC-CA- 979
Query 1044 TGATACT 1050
|||||||
Sbjct 980 TGATACT 986
> AT5G47080.1 | Symbols: CKB1 | casein kinase II beta chain 1
| chr5:19124612-19126562 REVERSE LENGTH=1386
Length=1386
Score = 412 bits (223), Expect = 3e-114
Identities = 506/640 (79%), Gaps = 30/640 (5%)
Strand=Plus/Plus
Query 412 CTGATGTA-GAATCTGAAACGGATAGTGAAGGATCAGATGTGAGTGGTTCAGAAGGTGAT 470
|||||| | ||||| || || |||||||||| |||||||||||||||||| || || ||
Sbjct 398 CTGATG-ATGAATCAGACACAGATAGTGAAGAATCAGATGTGAGTGGTTCTGATGGAGAG 456
Query 471 GATACATCGTGGATCTCATGGTTTTGTAATTTGAGAGGGAATGAGTT-TTTCTGTGAAGT 529
|| || || ||||| || |||||||||||| | ||||| || ||||| ||| ||||||||
Sbjct 457 GACACTTCATGGATATCTTGGTTTTGTAATCTAAGAGGAAACGAGTTCTTT-TGTGAAGT 515
Query 530 AGATGAAGATTATATACAAGATGATTTTAATC-TCTGTGGATTGAGTGGTCAAGTTCCTT 588
||||| ||||| || |||||||| || || | | |||||| | || ||| |||||| |
Sbjct 516 TGATGATGATTACATTCAAGATGACTTCAA-CTTGTGTGGACTCAGCAGTCTAGTTCCCT 574
Query 589 ACTATGATTATGCACTTGATCTCATTTTAGATGTTGAATCATC-AAATGGTGATATGTTT 647
|||| || || || |||||| | ||||| ||||||||||| || || || || ||||||
Sbjct 575 ACTACGAGTACGCTCTTGATTTGATTTTGGATGTTGAATCTTCTCAA-GGAGAGATGTTT 633
Query 648 ACTGAAGAACAGAATGAGA-TGGTGGAATCAGCTGCTGAGATGTTATATGGTCTTATTCA 706
|| || ||||||||||| | || | || ||||| ||||||||||| ||||| || |||||
Sbjct 634 ACAGAGGAACAGAATGA-ATTGATCGAGTCAGCAGCTGAGATGTTGTATGGACTGATTCA 692
Query 707 TGTTCGTTATAT-TCTCACTA-CTAAAGGAATGGCTGCTATGATGGAGAAGTATAAGAAT 764
|| |||||| || | | |||| | |||||| |||| || ||| | || || || || ||
Sbjct 693 TGCTCGTTACATAT-TGACTAGC-AAAGGATTGGCAGCAATGTTAGACAAATACAAAAAC 750
Query 765 TACGA-TTTCGGGAGATGTCCCAGAGTTT-TCTGTTGTGGGCAATCTTGTCTTCCGGTTG 822
|| || ||| || |||||||| ||||||| | || ||||| ||| |||||||||||||||
Sbjct 751 TATGACTTT-GGAAGATGTCCAAGAGTTTAT-TGCTGTGGCCAACCTTGTCTTCCGGTTG 808
Query 823 GGCAATCTGA-TATCCCGAGGTCGAGCACTGTGAAGATATACTGCCCAAAATGCGAGGAT 881
| ||||| || | | ||| | || ||||||||||||||||| ||||| |||||||| ||
Sbjct 809 GTCAATCAGACT-TACCGCGATCTAGCACTGTGAAGATATATTGCCCGAAATGCGAAGAC 867
Query 882 ATTTACTACCCGCGATCTAAA-TACCAAGGCAACATTGATGGAGCTTACTTTGGAACTAC 940
||||| ||||| ||||| ||| || ||||||||||||||||||||||||||||| || ||
Sbjct 868 ATTTATTACCCACGATC-AAAGTATCAAGGCAACATTGATGGAGCTTACTTTGGGACAAC 926
Query 941 -TTTCCCTCATTTGTTTCTCATGGCCTATGGGAA-CATGAAACCA-CAGAAGCCGGTTCA 997
||||| ||| |||| || ||| | |||||| | | | || ||| | |||| | ||
Sbjct 927 GTTTCCA-CATCTGTTCCTGATGACTTATGGGCATC-TCAAGCCAGC-GAAGGCAACACA 983
Query 998 AAACTATGTTCCTAAGA-TCTTTGGCTTTAAGGTACACAA 1036
||||||||||| |||| | ||||| || || |||||||
Sbjct 984 AAACTATGTTCA-AAGAGTGTTTGGGTTCAAATTACACAA 1022
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66716524305
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5