BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg483602
Length=1257
Score E
Sequences producing significant alignments: (Bits) Value
AT2G44730.1 | Symbols: | Alcohol dehydrogenase transcription f... 1676 0.0
> AT2G44730.1 | Symbols: | Alcohol dehydrogenase transcription
factor Myb/SANT-like family protein | chr2:18437333-18438565
REVERSE LENGTH=1233
Length=1233
Score = 1676 bits (907), Expect = 0.0
Identities = 1168/1280 (91%), Gaps = 73/1280 (6%)
Strand=Plus/Plus
Query 1 ATGTCCGATCCAGATTCTCCGATGAACCACGATTCAATTCCGGATCCATCACCGGTTCGG 60
||||||||||| ||||||||||||||||||||| ||||||||||||||||||| ||
Sbjct 1 ATGTCCGATCCGGATTCTCCGATGAACCACGATCCAATTCCGGATCCATCACC--TT--- 55
Query 61 ATCCAATCTTCTCCACTCCCGCCACCATTATCTTCCTCCGCTCAAGACGATGCGTCAACC 120
| | | || || ||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 56 -T---AGC-TC-CC-CTCCCGCCACCATTATCTTCCTCCGCTCATGACGATGCGTCAACC 108
Query 121 GAACCGGCTTCCGTCACAGATCTGAAGAGCGCCTCCATCCCCGCCGCGTCCAAAAACTCT 180
||||| |||||| |||||||||||||||||||||||||||| |||||||||| ||||||
Sbjct 109 GAACCAGCTTCCAACACAGATCTGAAGAGCGCCTCCATCCCCACCGCGTCCAAGAACTCT 168
Query 181 AGGCGGTTACCTCCGCCGTGCTGGTCTCTGGAAGAGACGATCGC-CTTAATTGACGCGTA 239
|||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||
Sbjct 169 AGGCGGTTACCTCCGCCGTGCTGGTCTCTGGAAGAGACGATCGCGC-TAATTGACGCGTA 227
Query 240 CAGAGACAAATGGTACGCTCTGAACCGTGGAAATCTCAAGGCGAATCACTGGGAAGAAGT 299
||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||
Sbjct 228 CAGAGACAAATGGTACGCTCTTAACCGTGGAAATCTAAAGGCGAATCACTGGGAAGAAGT 287
Query 300 TGCAGAAGCGGTTGGTGCTAATTGTCCCGACGTGACGT-TGAAGAAAACCGCGGTTCAGT 358
||||||||||||||||||||| || |||||||||| | | |||||||||||||||||||
Sbjct 288 TGCAGAAGCGGTTGGTGCTAACTGCCCCGACGTGA-TTCTTAAGAAAACCGCGGTTCAGT 346
Query 359 GCCGTCACAAGATGGAGAAGCTCCGGAAAAGGTACCGGACCGAGATCCAGAGAGCTAGAT 418
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 347 GCCGTCACAAGATGGAGAAGCTCCGGAAAAGGTACCGGACCGAGATACAGAGAGCTAGAT 406
Query 419 CTGTGCCGGTGGCGAGGTTTATATCGTCTTGGGTTCATTTTAAGCGAATGGAAGCTATGG 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 407 CTGTGCCGGTGGCGAGGTTTATATCGTCTTGGGTTCATTTTAAGCGAATGGAAGCTATGG 466
Query 479 AGAATAGACCAGAGATCAAACAAGGTAACGAAAGTGGAGATGATGAT---CACGATGATG 535
|||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||
Sbjct 467 AGAATAGACCAGAGATTAAACAAGGTAACGAAAGTGGAGATGATGATGATCACGATGATG 526
Query 536 CCAATTACACAGCTAGGTATGAATTCAAAAACGGCggaggaggaggaggaggCTTAGTCC 595
|||||||||||||||||| |||||| ||||||||||||||||| | |
Sbjct 527 GTAATTACACAGCTAGGTATCAATTCAG---CGGCGGAGGAGGAGGAG----C---G--- 573
Query 596 CAAGGACGACGCCGAGGTTCTTTAATAGGAATGGTACGGCTGGATCTGGTGGTGGTGGAG 655
| |||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||
Sbjct 574 -A-GGACGACGCCGAGGTTCTTTAACAGGAATGGTACAGCTGGATCTGGTGGTGGTGGAG 631
Query 656 GGAGTAGTAGTAGCGGCGGAATTCGAATTCGGATACCGACTGGAGTGAGTATAGCACAGC 715
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 632 GGAGTAGTAGTAGCGGCGGGATTCGAATTCGGATACCGACTGGAGTGAGTATAGCACAGC 691
Query 716 CGGGACCGAGATATCCCGGTAAGGTTGATCAGAAATACACGGCGAGTCCAAGTTCTGGTG 775
| |||||||| | |||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 692 CTGGACCGAGGTTTCCCGGTAAGATTGATCAGAAATACACGGCGAGTCCAAGTGCTGGTG 751
Query 776 TGAGTTCAAATCCGAGACCTGGTCGTGGTATCGGAGCAGGAGGATCTAACTACGGTGCTA 835
||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||
Sbjct 752 TGAGTTCAAATCCGAGAGCTGGTCGTGGTATCGGAGCAGGAGGATCTAGTTACGGTGCTA 811
Query 836 GAGTTGTGAGAATTCCtgaaggggaagagagaggaggagggaaacgagggagagagatga 895
|||||||||||||||||||||| | | ||| ||| | | ||||||||||||||||
Sbjct 812 GAGTTGTGAGAATTCCTGAAGG--A-G-GAG-GGA--A---A--CGAGGGAGAGAGATGA 859
Query 896 tgatgaagacggaggaggatgatgataatgatCCAATGGTGGAGATAGCGAGTGCGATAA 955
||||||||||||||||||||||| | | ||||||||||||||||||||| ||||||||||
Sbjct 860 TGATGAAGACGGAGGAGGATGAT-A-A-TGATCCAATGGTGGAGATAGCTAGTGCGATAA 916
Query 956 AGCTGCTTGGAGATACGTTTGTGAGAACAGAGCAGACGAGAATGGAGATGACGAGAGAGA 1015
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 917 AGCTGCTTGGAGATACGTTGGTGAGAACAGAGCAGACGAGAATGGAGATGACGAGAGAGA 976
Query 1016 TAGAAGCGATGAGGATGGATACAGAGATGAAGAGGACCAAGATGATTTTGGAATCGCAAC 1075
||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||
Sbjct 977 TAGAAGCGATGAGGATGGATACAGAGATGAAGAGGACAAAGATGATTTTGGAATCTCAAC 1036
Query 1076 AACGAATTGTGGAAGCATTTGCTAAAAGCTTATCAGAT-A-A-TAC-A-G-AGGAG---G 1126
|||||||||||||||| ||||||||||||||||||||| | | ||| | | ||||| |
Sbjct 1037 AACGAATTGTGGAAGCGTTTGCTAAAAGCTTATCAGATTATACTACTACGGAGGAGCAAG 1096
Query 1127 ACAAGAAGAAGAAAGC-A-A--GAAGAATGTCGTC-T-TT-AGCTTCTGACTCTTGATGA 1179
|||||||||||||||| | | ||||||||||||| | || |||| ||||| ||||
Sbjct 1097 ACAAGAAGAAGAAAGCTAGATAGAAGAATGTCGTCGTCTTTAGCT---GACTCCTGAT-- 1151
Query 1180 TCAAAAGGCGCCATAAATTAAATTA-TGTGTGATTTTCAAATTT-CTAGATTGTAGAAAT 1237
|||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||
Sbjct 1152 -CAAAAGGCGCCATAAATTAAATTAATGTGTGATTTTCAAATTTTCTAGATTGTAGAAAT 1210
Query 1238 CGAAAGAGCTTTAATTAGCT 1257
|||||||||||| |||||||
Sbjct 1211 CGAAAGAGCTTTTATTAGCT 1230
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61796870895
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5