BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg483603
Length=946
Score E
Sequences producing significant alignments: (Bits) Value
AT2G44740.1 | Symbols: CYCP4;1 | cyclin p4;1 | chr2:18441989-18... 1297 0.0
> AT2G44740.1 | Symbols: CYCP4;1 | cyclin p4;1 | chr2:18441989-18443399
REVERSE LENGTH=1002
Length=1002
Score = 1297 bits (702), Expect = 0.0
Identities = 829/887 (93%), Gaps = 21/887 (2%)
Strand=Plus/Plus
Query 77 CACACACAAAAATGGCGGAGCTTGAGAACCCAAGTGTAATGTCGAAGCTAATAGCATTCT 136
|||||| |||||||||||| |||||||| |||||||||||||||||||| ||||||||||
Sbjct 85 CACACAAAAAAATGGCGGAACTTGAGAATCCAAGTGTAATGTCGAAGCTGATAGCATTCT 144
Query 137 TATCTTCATTGCTAGAGCGAGTTGCTGAGTCAAACGATCTGACCAGGCGAGTCACGACTC 196
|||||||||||||||||||||||||||||||||||||||||||| | |||||| ||||||
Sbjct 145 TATCTTCATTGCTAGAGCGAGTTGCTGAGTCAAACGATCTGACCCGACGAGTCGCGACTC 204
Query 197 AGTCACAGAGAGTTTCGGTGTTCCATGGATTGAGTCGACCAACCATAACGATTCAGAGCT 256
|||||||||||||||||||||| |||||| ||||||||||||| ||||||||||||||||
Sbjct 205 AGTCACAGAGAGTTTCGGTGTTTCATGGACTGAGTCGACCAACGATAACGATTCAGAGCT 264
Query 257 ATCTACAGAGGATCTTCAAATACGCAAATTGTAGTCCTTCTTGCTTCGTCGTGGCTTACG 316
||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 265 ATCTAGAGAGGATCTTCAAATACGCAAATTGTAGTCCTTCTTGCTTCGTCGTTGCTTACG 324
Query 317 TTTATCTCGACCGTTTCACTCACAGACAACCTTCACTTCCCATCAATTCCTTTAATGTCC 376
|||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 325 TTTATCTCGATCGTTTCACTCACAGACAACCTTCACTTCCCATCAATTCCTTTAACGTCC 384
Query 377 ATCGTCTTCTCATCACCAGTGTCATGGTCGCTGCTAAATTCCTCGATGATCTGTACTACA 436
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 385 ATCGTCTTCTCATCACTAGTGTCATGGTCGCTGCTAAATTCCTCGATGATCTGTACTACA 444
Query 437 ACAATGCGTATTACGCGAAAGTGGGAGGAATAAGCACGAAAGAGATGAATTTTCTGGAGC 496
|||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||
Sbjct 445 ACAATGCGTATTACGCGAAAGTGGGAGGAATAAGCACGAAGGAGATGAATTTTCTAGAGC 504
Query 497 TGGATTTCTTATTCGGGTTAGGATTTGAATTAAACGTGACTCCAAACACATTCAACGCCT 556
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 505 TGGATTTCTTATTCGGGTTAGGATTTGAATTAAACGTGACGCCAAACACATTCAACGCCT 564
Query 557 ACTTCTCTTATCTTCAAAAGGAAATGACTCTTCTTCAACCTCTCTCTCTCGTTGTTGTCC 616
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 565 ACTTCTCTTATCTTCAAAAGGAAATGACTCTTCTTCAACCTCTCTCTCTCGTTGTTGTCC 624
Query 617 CATCATCAAGATCTGTCATTACCTTCAACGACGATGAAGCTTCTCATCAGAAACAACAAC 676
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 625 CATCATCAAGATCTCTCATTACCTTCAACGACGATGAAGCTTCTCATCAGAAACAACAAC 684
Query 677 AACAAC---TCGCTGTTTAAATCACAACAAAATTT----------T-TG--TCTCTTTAT 720
|||||| ||||||||| |||||||||||||| | | ||||||| |
Sbjct 685 AACAACAACTCGCTGTTTGAATCACAACAAAATCCAAAAAACAAATCTAAATCTCTTTCT 744
Query 721 --CAATTTCTCCTT-TAAAAAATATGAATTGTGTAGTTGTAGATGATGTAGAGATTAGTC 777
| ||| || || | |||| |||||||||||||||||||||||||||||||||||||
Sbjct 745 GTCTCTTTATCTTTCTTTAAAA-ATGAATTGTGTAGTTGTAGATGATGTAGAGATTAGTC 803
Query 778 GGCAGGGACTCTGATCTTGTCTTAATCAAATCTTGATTAAGAATAAATAAGAAATTTCAA 837
|||||||||||| ||||||||||||||||||| ||||||||||||||||||||| |||||
Sbjct 804 GGCAGGGACTCTTATCTTGTCTTAATCAAATCCTGATTAAGAATAAATAAGAAAATTCAA 863
Query 838 AATCAACCAGTAAGTTCTTGTCTATCTCTATCTCTAGATGTGGACCGATGAGAAATTTAT 897
||||||||||||||||||||||||||||| ||||||||||||||| |||| |||||| ||
Sbjct 864 AATCAACCAGTAAGTTCTTGTCTATCTCTTTCTCTAGATGTGGACAGATGGGAAATTAAT 923
Query 898 CTTTTACAGGCTGGCTGGCTAAAGAATTTAAATGTCATTAGTTAAAT 944
|||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 924 CTTT-ACAGGCTGGCTGGCTAAAGAATTTAAATGTCATTAGTTAAAT 969
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46265649387
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5