BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg483604
Length=875
Score E
Sequences producing significant alignments: (Bits) Value
AT2G44745.1 | Symbols: | WRKY family transcription factor | ch... 1321 0.0
> AT2G44745.1 | Symbols: | WRKY family transcription factor |
chr2:18447273-18449009 REVERSE LENGTH=871
Length=871
Score = 1321 bits (715), Expect = 0.0
Identities = 830/882 (94%), Gaps = 22/882 (2%)
Strand=Plus/Plus
Query 1 AAACAATGGAAGGAGGAGGAAGAAGAGTATTCAATAATTACGATCTACAACAAGTGACAT 60
||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||
Sbjct 1 AAACAATGGAAGGAGGAGGGAGAAGAGTATTCAGTAATTACGATCTACAACAAGTGACAT 60
Query 61 CGTCGTCGACGACGGTTCAAGAGAATATGAACTTCCTCGTTCCTTTTGAAGAAACCAATG 120
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 CGTCGTCGACGACGATTCAAGAGAATATGAACTTCCTCGTTCCTTTTGAAGAAACCAATG 120
Query 121 TCTTAACCTTTttctcttcttcttcttcctcttctctctcttctccttctttcCCCATTC 180
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 121 TCTTAACCTTTTTCTCTTCTTCTTCTTCCTCTTCTCTTTCTTCTCCTTCTTTCCCCATTC 180
Query 181 ACAACTCTTCATCCACTACTACTACTCATGCACCTCTAGGGTTTTCTAACAATCTTCAGG 240
|||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 181 ACAACTCTTCCTCCACTACTACTACTCATGCACCTCTAGGGTTTTCTAATAATCTTCAGG 240
Query 241 GTGGAGGACCCTTGGGATCAAAGGTGGTTAATGATGATCAGGAGAATTTTAGAGGTGGAA 300
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 241 GTGGAGGACCCTTGGGATCAAAGGTGGTTAATGATGATCAGGAGAATTTTGGAGGTGGAA 300
Query 301 CTAACACTGATGCCCATTCTAATTCTTGGTGGAGATCAAATAGTGGGAGTGGAGATATGA 360
|||||| |||||| |||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 301 CTAACAATGATGCTCATTCTAATTCTTGGTGGAGATCAAATAGTGGAAGTGGAGATATGA 360
Query 361 AGAACAAAGTGAAGATAAGGAGGAAACTAAGAGAGCCAAGATTCTGTTTCCAAACAAAAA 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 361 AGAACAAAGTGAAGATAAGGAGGAAACTAAGAGAGCCAAGATTCTGTTTCCAAACCAAAA 420
Query 421 GCGATGTCGATGTTCTTGACGATGGCTACAAATGGCGTAAATATGGTCAGAAAGTCGTCA 480
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 GCGATGTTGATGTTCTTGACGATGGCTACAAATGGCGTAAATATGGTCAGAAAGTCGTCA 480
Query 481 AGAACAGCCTTCACCCCAGGAGTTATTACAGATGCACACACAACAACTGTAGGGTGAAGA 540
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 481 AGAACAGCCTTCACCCCAGGAGTTATTACAGATGCACACACAACAACTGTAGGGTGAAAA 540
Query 541 AGAGAGTGGAGCGACTATCGGAAGATTGTAGAATGGTGATTACTACTTACGAAGGTCGTC 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 AGAGAGTGGAGCGACTATCGGAAGATTGTAGAATGGTGATTACTACTTACGAAGGTCGTC 600
Query 601 ACAACCACATTCCCTCTGATGACTCCACTTCTCCTGACCATGATTGTCTCTCTTCCTTTT 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 ACAACCACATTCCCTCTGATGACTCCACTTCTCCTGACCATGATTGTCTCTCTTCCTTTT 660
Query 661 AACCTCTCTTTCTGtatatctatatatatacagatatatctgtgcatatatagatgtgtg 720
||| ||||||||| |||||||||||||| |||| ||||| ||||| |||||||||||||
Sbjct 661 AACATCTCTTTCTATATATCTATATATAGACAGTTATAT--GTGCACATATAGATGTGTG 718
Query 721 atatatTGCATGCATGTGTTTTT-C-TAGAGTATGTCAT-A--A-GTCATCAGATGTTAT 774
||||||||||| || || | || | | | || | ||| | | |||||||||||||||
Sbjct 719 ATATATTGCAT--ATTTGATATTGCAT-GTGTTTTTCAAGAGTATGTCATCAGATGTTAT 775
Query 775 GCATATCTTCTTGACTTGTTTGCTTACatatatatagtatacatatgtaataatatatat 834
|||||| ||||||||||||| ||||| || ||||||||||||||||||||||||
Sbjct 776 GCATATATTCTTGACTTGTT-GCTTA--TA------GTATACATATGTAATAATATATAT 826
Query 835 TGACATTGGTTGTTCATTT-TGGATAAAATTTTCAATGCGTT 875
|||||||||| |||||||| || | ||| ||||||||||||
Sbjct 827 TGACATTGGTAGTTCATTTCTGT-TCAAACTTTCAATGCGTT 867
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42699024950
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5