BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg483605
Length=1588
Score E
Sequences producing significant alignments: (Bits) Value
AT2G44760.1 | Symbols: | Domain of unknown function (DUF3598) ... 2497 0.0
> AT2G44760.1 | Symbols: | Domain of unknown function (DUF3598)
| chr2:18452851-18454809 REVERSE LENGTH=1613
Length=1613
Score = 2497 bits (1352), Expect = 0.0
Identities = 1514/1589 (95%), Gaps = 23/1589 (1%)
Strand=Plus/Plus
Query 1 ACGATGCAAACGCCATTTCTTCATCTCTGTAAAAGCTTCACTTCTTCTTCTCCACTTTCA 60
||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 40 ACGATGCAATCACCATTTCTTCATCTCTGTAAAAGCTTCACTTCTTCTTCTCCACTTTCA 99
Query 61 TGTAACAACCACAGTCTATGCTTTGGATTTCATAATGCTCTGTTATCTCCTTCAATCTGC 120
||| ||||||||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 100 TGTCACAACCACAATATATGCTTTGGATTTCATAATGCTCTGTTATCTCCTTCAATCTGC 159
Query 121 AATTTCCGGCGACGAAACAATGTCAACAGGAGGAAAATCGTGGCGCAGGGATCAAAACCA 180
||||||| ||||||||||||||||||| |||| |||||||| ||||||||||||| || |
Sbjct 160 AATTTCCAGCGACGAAACAATGTCAACGGGAGAAAAATCGTTGCGCAGGGATCAAGACTA 219
Query 181 AACGACGGAAATAGCCGTCCGGCGGGAAACAAAGGGAAAGTGACTCTGAAAGGTAACAAA 240
||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||
Sbjct 220 AACGACGGAAATAGCCGTCCGGCGGGAAACAAAGGGAAAGTAAGTCTGAAAGGTAACAAA 279
Query 241 GAGAATATATGGAGCGTTGATAACGAAATGGCGGAGAAGGAGAAGCGTAAGGTGAAGCCA 300
|||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||
Sbjct 280 GAGAATATATGGAGCGTTGACAACGAAATGGCGGAGAAGGATAAGCGTAAGGTGAAGCCA 339
Query 301 AAGGGAGGAAGAAGAAGCGGGAAGAGATTAGGTGGAGGAAGAAAGGGTAAAATCGGTAGA 360
|| |||||||| ||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 340 AA---AGGAAGAAAAAGCGGGAAGAGATTAGGTGGAGGAAGAAAGGGTAAATTCGGTAGA 396
Query 361 GTTTTGGTTTCTGGGACGATGTTGATCGAATCCGAGACTGTTCTTCAAACTCAGGAACCT 420
||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 397 GTTTTGGTTTCAGGGACGATGTTGATCGAATCCGAGACTGTTCTTCAAACTCAGGAGCCT 456
Query 421 GTGATAAAACCAGTTTGGAGAACATTTGCGAGTAGTGTAAGTGGGATTTGGAAAGGTGTA 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 457 GTGATAAAACCAGTTTGGAGAACATTTGCGAGTAGTGTAAGTGGGATTTGGAAAGGTGTA 516
Query 481 GGAGCTGTGTTCTCGCCGATAACTGCAGAGATGGAGCCGATTGAAATTGGGAAGAAGAAT 540
|||||||||||||||||||| |||| ||||||||| ||||||||||||||||||||||||
Sbjct 517 GGAGCTGTGTTCTCGCCGATTACTGGAGAGATGGAACCGATTGAAATTGGGAAGAAGAAT 576
Query 541 GAGAGTCTTTATGATTGTTATACTCTTTCTAGGATCGAAGCGTTACCATCTCCTCCTTCT 600
||||||||||||||||||||||||||||||| ||| |||||||||||| | ||||||||
Sbjct 577 GAGAGTCTTTATGATTGTTATACTCTTTCTAAGATTGAAGCGTTACCA--T-CTCCTTCT 633
Query 601 CGTGGAGCTAATACAGAGTCTGAGATACAGAGGAAGATCAATTGGGTTACTTTGAATCCT 660
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 634 AGTGGAGCTAATACAGAGTCTGAGATACAGAGGAAGATCAATTGGGTTACTTTAAATCCT 693
Query 661 CATGGAGAGTTTTTCCAAATTTCTGAGAGTAAAGATGAGATTTTGGTTGATCAGACTGGT 720
||||||||| | ||||||||||||||||||| |||| |||||||||| ||||
Sbjct 694 CATGGAGAG----T-----GTTCTGAGAGTAAAGATGAGGTTTTTGTTGATCAGAGTGGT 744
Query 721 GTAGATACTCGTTTGCCTAAGTTCGAGTCTTTTAACTTGAAAGCAAGTGATGTCATGGAA 780
||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 745 GTAGATAGTCGTTTGCCTAAGTTTGAGTCTTTTAACTTGAAAGCAAGTGATGTCATGGAA 804
Query 781 GAGGATTCCATGGTAGAT-CAACCCGGCCTCGTTTACTTCGAGGATGGATCGTATTCCAG 839
|||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||
Sbjct 805 GAGGATTCCATGGTAGATGC-ACCCGGCCTCGTTTACTTCGAGGATGGATCGTATTCCAG 863
Query 840 AGGTCCAGTTACAATCCCTGTTGGGGAGATGAGTGAATCGAACTATTACCTCACACCGAC 899
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 864 AGGTCCAGTTACAATCCCTGTTGGGGAGATGAGTGAATCCAACTATTACCTCACACCGAC 923
Query 900 TTTCAAGTTTGAACAGTGTCTGGTGAAGGGTTGCCATAAGAGACTGAGAGTAGTCCACAC 959
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 924 TTTCAAGTTTGAACAGTGTCTGGTGAAGGGTTGCCATAAGAGACTGAGAGTAGTTCACAC 983
Query 960 TATAGAGTTCGCCAATGGTGGTGTAGATATACAGATAATGAGAGTTGGTGTTTATGAAGA 1019
|||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 984 TATAGAATTCGCCAATGGTGGTGCAGATATACAGATAATGAGAGTTGGTGTTTATGAAGA 1043
Query 1020 ACAGTGGGTTAGTCCTTCAAATTATGAAGAGCAAAGTGACAACGACGCACCATTGGAGTT 1079
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1044 ACTGTGGGTTAGTCCTTCAAATTATGAAGAGCAAAGTGACAACGACGCACCATTGGAGTT 1103
Query 1080 AAAACCATTCTCACAGAGGAAACGCACGCAACCATCAGAACTAACAGGATCATGGAAAGT 1139
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1104 AAAACCATTCTCACAGAGGAAACGCACGCAACCATCAGAACTAACAGGATCATGGAAAGT 1163
Query 1140 ATTTGAAGTAAGTGCAACTCCAATCTATGGAGAAGAAGCCGAATTCGAGCAGCCAGGTGA 1199
||||||||||| |||||||||| |||| |||||||||||||||||||| |||||||||||
Sbjct 1164 ATTTGAAGTAAATGCAACTCCACTCTACGGAGAAGAAGCCGAATTCGAACAGCCAGGTGA 1223
Query 1200 AAGCACTCCAGTTGTGTACCTGTGCACAGAAGCTCTAAAGAGAAGGAACTTACCGGAAAC 1259
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1224 AAGCACTCCAGTTGTGTACCTCTGCACAGAAGCTCTAAAGAGAAGGAACTTACCGGAAAC 1283
Query 1260 TTTGGTTTCGTTTGGAGAGGAAGAGATGATAGATATGCAAGATGTGTCTGTGATGTGGCT 1319
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1284 TTTGGTTTCGTTTGGGGAGGAAGAGATGATAGATATGCAAGATGTGTCTGTGATGTGGCT 1343
Query 1320 ACCAGGTGGTGTGACTGCATACGTGGATGTGAAGAAAGATGGAGTGTTGTGCATTGGAGT 1379
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1344 ACCAGGTGGTGTGAGTGCATACGTGGATGTGAAGAAAGATGGAGTGTTGTGCATTGGAGT 1403
Query 1380 TGGATGGTATTCAGATGAAGGAATCAATCTTGTGATGGAGAGGGATTATGGTTTGGATGG 1439
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1404 TGGATGGTATTCAGATGAAGGAATCAATCTTGTGATGGAGAGAGATTATGGTTTGGATGG 1463
Query 1440 GAATCTTAAAGAAGTTAGATCAAAATCCGAAATGAAGAGACGATGGACAGAAGAACCCAA 1499
|||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1464 GAATCTTAAAGAAGTTCGATCCAAATCCGAAATGAAGAGACGATGGACAGAAGAACCCAA 1523
Query 1500 GTAAAACTTGTTTGTTTTAGATTTGATAATTACTCTTTGGTACAAATGTAGTAACACACT 1559
|||||||| | |||||||||||||||| | | ||| | ||||||||||||||||| |
Sbjct 1524 GTAAAACTCCTCTGTTTTAGATTTGATACT-A-TCTA-G-TACAAATGTAGTAACAC--T 1577
Query 1560 AGCTGATGTTTGGTAAGGCAATAAATTGT 1588
|||||||||||||||||||||||||||||
Sbjct 1578 AGCTGATGTTTGGTAAGGCAATAAATTGT 1606
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 78413251290
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5