BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg483606
Length=1450
Score E
Sequences producing significant alignments: (Bits) Value
AT2G44770.1 | Symbols: | ELMO/CED-12 family protein | chr2:184... 1496 0.0
AT3G60260.1 | Symbols: | ELMO/CED-12 family protein | chr3:222... 809 0.0
> AT2G44770.1 | Symbols: | ELMO/CED-12 family protein | chr2:18457322-18460383
FORWARD LENGTH=1607
Length=1607
Score = 1496 bits (810), Expect = 0.0
Identities = 921/973 (95%), Gaps = 14/973 (1%)
Strand=Plus/Plus
Query 130 ATTCGAAGTTGATCGCTCTTTGGTTCGATTGGTTTCTTA-TTGATTCGAT--T-G-CTGA 184
||||||||||||||||| |||| |||||||||||| | | || |||||| | | | ||
Sbjct 206 ATTCGAAGTTGATCGCTATTTGATTCGATTGGTTT-TGAGTT--TTCGATCCTCGACGGA 262
Query 185 TGAAGTTATCTGGTTTTGCATTTGA-GAGCGAGAAAAGAGAAA-TCGAGAGATGGATGAT 242
|| || || | | || || || |||||| | |||||||| | ||||||||||||||
Sbjct 263 TGGAG--ATTTTGAAGTGAATCGGAGGAGCGA-ATAAGAGAAAGT-GAGAGATGGATGAT 318
Query 243 AGAGAAGGCTCGTTCGTAGCTGTCAGGCGGATTTCTCAGGGTCTCGAACGAGGGAGCGTT 302
||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 319 AGAGAAGGCTCGTTCGTAGCTGTTAGGCGGATTTCTCAGGGTCTCGAACGAGGAAGCGTT 378
Query 303 TACAATTCATCATCTGCTGAGGCTGTGCCTGGATCAGCAGCTTGGTTAGGCCGGGGTCTT 362
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 379 TACAATTCATCATCTGCTGAGGCTGTGCCTGGATCAGCAGCTTGGTTAGGCCGAGGTCTT 438
Query 363 TCTTGTGTTTGTGCTCAGAGAAGAGATAGTGACGCAAATTCTACGTTTGATCTAACACCT 422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 439 TCTTGTGTTTGTGCTCAGAGAAGAGATAGTGACGCAAATTCTACGTTTGATCTAACACCT 498
Query 423 GCTCAGGAGGAATCCTTGCAGAACTTGCAGAACCGCATTGACGTAGCTTATGATAGCACA 482
||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 499 GCTCAGGAGGAATGCTTGCAGAGTTTGCAGAACCGCATTGACGTAGCTTATGATAGCACA 558
Query 483 ATACCCTTGCATCAGGAAGCGCTGAGGGATCTGTGGAAACTTGCCTTTCCTGAAGAAGAG 542
|||||||||||||||||||| || ||||| |||||||||||| |||||||||||||||||
Sbjct 559 ATACCCTTGCATCAGGAAGCTCTAAGGGAGCTGTGGAAACTTTCCTTTCCTGAAGAAGAG 618
Query 543 CTTCATGGATTAATATCTGAGCAGTGGAAAGAGATGGGTTGGCAGGGCAAAGATCCGTCA 602
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 619 CTTCATGGATTAATATCTGAGCAGTGGAAAGAGATGGGTTGGCAGGGCAAAGATCCGTCA 678
Query 603 ACAGATTTTAGGGGTGGTGGTCTCATATCTCTTGAAAACTTGCTGTACTTTGCTAGGAAC 662
||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||
Sbjct 679 ACAGATTTTAGGGGTGGTGGTTTCATATCTCTTGAAAACTTGCTGTACTTTGCCAGGAAC 738
Query 663 TTTCAGAAATCCTTCCAGGACCTTCTGAGGAAACAGGTTGGGGATCGGTCTGTGTGGGAA 722
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 739 TTTCAGAAATCCTTCCAGGACCTTCTGAGGAAACAGGTTGGGGATCGGTCTGTGTGGGAA 798
Query 723 TACCCCTTTGCTGTTGCTGGTATCAACTTAACATTCATGCTCATCCAAATGCTTGACCTT 782
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 799 TACCCCTTTGCTGTCGCTGGTATCAACTTAACATTCATGCTCATCCAAATGCTTGACCTT 858
Query 783 GAAGCAGTGAAACCACGAACAATTGTTGGGGCAACTTTTCTGAAGTTTCTTTCTGAGAAC 842
|||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 859 GAAGCAGTGAAACCGCGAACAATTGTTGGGGCAACTTTTCTGAAATTTCTTTCTGAGAAC 918
Query 843 GAATCTGCATTTGACCTTCTTTATTGCATTGCATTCAAGCTAATGGATCAGCAATGGCTT 902
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 919 GAATCTGCATTTGACCTTCTTTATTGCATTGCATTCAAGCTAATGGATCAGCAATGGCTT 978
Query 903 TCAATGCGCGCCTCATACATGGAGTTTAACACGGTGATGAAATCAACAAGGAGACAGTTG 962
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 979 TCAATGCGTGCCTCATACATGGAGTTTAACACGGTGATGAAATCAACAAGGAGACAGCTG 1038
Query 963 GAGAGAGAGCTGATGCTGGAAGACATAATGCATCTTGAGGACTTACCCTCCTACGCTCTT 1022
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1039 GAGAGAGAGCTGATGCTGGAAGACATAATGCATCTTGAGGACTTACCCTCCTACGCTCTT 1098
Query 1023 CTCAATCAATAGCCTTTACGATAATAATAAATAGCAAGAAGAGTTTCTAACCTCAGAATA 1082
|||||||||||||| ||| ||| ||| ||||||| ||||||||||||||||||||| |||
Sbjct 1099 CTCAATCAATAGCCCTTATGATGATATTAAATAGTAAGAAGAGTTTCTAACCTCAGGATA 1158
Query 1083 ACACAAGGCTGCT 1095
|||||||| ||||
Sbjct 1159 ACACAAGGTTGCT 1171
Score = 379 bits (205), Expect = 4e-104
Identities = 319/369 (86%), Gaps = 28/369 (8%)
Strand=Plus/Plus
Query 1094 CTTCTTTGACCTTTTCTTGTGTTTGGTGGTTCTACTTCTAAGTAACAACTCCAAAACCGA 1153
|||| |||||||||||||||||||||||| ||||||| ||||||| ||| |||||
Sbjct 1223 CTTCGTTGACCTTTTCTTGTGTTTGGTGG------TTCTAAGAAACAACTTCAACACCGA 1276
Query 1154 GTTGTTACTTGTTATATTAAAACAAGAAATAGAGTGTGA-A-AGA--GAGAGAGGTTGGG 1209
||||||||||||||||||||||||||||| ||||||||| | ||| | |||||||||||
Sbjct 1277 GTTGTTACTTGTTATATTAAAACAAGAAAAAGAGTGTGAGAGAGACGGGGAGAGGTTGGG 1336
Query 1210 ATAAATCTCAATTTGGTTTGGTTGCAAATGAGTGTGTAGCTGAAATGGGTTTGTTTTCTA 1269
||||||||||| ||||||||| || |||||||||||| |||||| ||||||||||
Sbjct 1337 ATAAATCTCAA-----TTTGGTTGC-AAGGAGTGTGTAGCTAAAATGGAATTGTTTTCTA 1390
Query 1270 ACAACGTTGAGGTTTTTTAGTTACTGTGTGAGTGATTGATGTTAGTGTGTGGGGGATAAT 1329
|||||||| ||||||||||||||||||||| ||||||||| ||| ||||| |||||||||
Sbjct 1391 ACAACGTTCAGGTTTTTTAGTTACTGTGTGGGTGATTGATCTTATTGTGT-GGGGATAAT 1449
Query 1330 AATGATTTGGTGATGTCCACAAATTCAAAAGCAGTCACTGTTAAAGGACTCTTAACA-GG 1388
||| |||||||||||||||||| ||||||||||||| |||||||| ||||| | ||| |
Sbjct 1450 AATCATTTGGTGATGTCCACAAGTTCAAAAGCAGTCTCTGTTAAA-GACTC-T-ACACGA 1506
Query 1389 GGTTAAAACTTCATTTGTTTGTGTATTAAAA----GTTGTT--TT-GATTGTTTATTGCT 1441
||||||||||||||||||||||||||||||| | ||| || |||||||||| |||
Sbjct 1507 GGTTAAAACTTCATTTGTTTGTGTATTAAAAAAAAGAAGTTACTTTGATTGTTTATAGCT 1566
Query 1442 GTGAATATT 1450
||||| |||
Sbjct 1567 GTGAAAATT 1575
> AT3G60260.1 | Symbols: | ELMO/CED-12 family protein | chr3:22273853-22277148
FORWARD LENGTH=1329
Length=1329
Score = 809 bits (438), Expect = 0.0
Identities = 696/819 (85%), Gaps = 24/819 (3%)
Strand=Plus/Plus
Query 229 GAGAGATGGATGATAGAGAAGGCTCGTTCGTAGCTGTCAGGCGGATTTCTCAGGGTCTCG 288
|||||||||||||||||| ||| ||||||||||| || || ||||||| || ||||| |
Sbjct 215 GAGAGATGGATGATAGAGGAGGATCGTTCGTAGCAGTGAGAAGGATTTCACAAGGTCTAG 274
Query 289 AACGAGGGAGCGTTTA-CAATTCATCATCTGCTGAGGCTGT-GCCTGGATCAGCAGCTTG 346
||||||| || ||||| | |||| || |||||||||| ||| | ||||||| ||||| ||
Sbjct 275 AACGAGGAAGTGTTTATC-ATTCTTCTTCTGCTGAGGTTGTAG-CTGGATCGGCAGCGTG 332
Query 347 GTTAGGCCGGGGTCTTTCTTGTGTTTGTGCTCAGAGAAGAGATAGTGACGCAAATTCTAC 406
||||||||| || ||||| |||||||||| |||| | ||||| ||||| | | || |
Sbjct 333 GTTAGGCCGTGGCCTTTCCTGTGTTTGTGTTCAGGGTAGAGACGGTGACCCTCGTCCTTC 392
Query 407 GTTTGATCTAACACCTGCTCAGGAGGAAT-CCTTGCAGAACTTGCAGAA-CCGCATTGAC 464
||||||||||| |||||||||||||||| || |||||| ||||| || |||||||||
Sbjct 393 ATTTGATCTAACGCCTGCTCAGGAGGAATGCC-TGCAGAGGTTGCA-AAGCCGCATTGAT 450
Query 465 GTAGCTTATGATAGCACAATACCCT-TGCATCAGGAAGCGCTGAGGGATCTGTGGAAACT 523
|| |||||||| ||| ||||| ||| |||||||||||| || | |||||| ||||||||
Sbjct 451 GTTGCTTATGACAGCTCAATA-CCTCAGCATCAGGAAGCTCTAAAGGATCTTTGGAAACT 509
Query 524 TGCCTTTCCTGAAGAAGAGCTTCATGG-ATTAATATCTGAGCAGTGGAAAGAGATGGGTT 582
||| ||||||||||||||||| || || ||| ||||||| |||||||| || |||||||
Sbjct 510 TGCATTTCCTGAAGAAGAGCTACACGGAATT-GTATCTGATCAGTGGAAGGAAATGGGTT 568
Query 583 GGCAGGGCAAAGATCCGTCAACAGATTTTAGGGGTGGTGGTCTCATATCTCTTGAAAACT 642
||||||| |||||||| || ||||||||||||||||||||| | || ||||| |||||||
Sbjct 569 GGCAGGGAAAAGATCCATCGACAGATTTTAGGGGTGGTGGTTTTATTTCTCTCGAAAACT 628
Query 643 TGCTGTACTTTGCTAGGAACTTTCAGAAATCCTTCCA-GGACCTTCTGAGGAAACAGGTT 701
|| ||||||| |||||||| || | |||||| ||||| || ||||||| |||||||||||
Sbjct 629 TGTTGTACTTCGCTAGGAAATTCCCGAAATCTTTCCACGG-CCTTCTGCGGAAACAGGTT 687
Query 702 GGGGATCGGTCTGTGTGGGAATACCCCTTTGCTGTTGCTGGTATCAACT-TAACATTCAT 760
|| ||||| |||||||||||||||||||||||||||||||| ||||| | ||||||||||
Sbjct 688 GGCGATCGTTCTGTGTGGGAATACCCCTTTGCTGTTGCTGGCATCAA-TATAACATTCAT 746
Query 761 GCTCATCCAAATGCTTGACCTTGAAGCAGTGAAACCACGAACAATTGTTGGGGCAACTTT 820
||||||||| ||||||||||||||||||||||||||||||| |||||||||| ||| ||
Sbjct 747 GCTCATCCAGATGCTTGACCTTGAAGCAGTGAAACCACGAAGTATTGTTGGGGAAACATT 806
Query 821 TCTGAAGTTTC-TTTCTGAGAACGAATCTGCATTTGACCTTCTTTATTGCATTGCATTCA 879
||| ||| ||| |||| | |||||| ||||| ||||||||||||||||||||||| ||||
Sbjct 807 TCT-AAGATTCCTTTCGGTGAACGAGTCTGCGTTTGACCTTCTTTATTGCATTGCCTTCA 865
Query 880 AGCTAATGGATCAGCAATGGCTTTCAATGCGCGCCTCATACATGGAGTTTAACACGGTGA 939
|||||||||||||||||||||| || ||||| || |||||||||||||||||||| ||||
Sbjct 866 AGCTAATGGATCAGCAATGGCTATCCATGCGTGCTTCATACATGGAGTTTAACACTGTGA 925
Query 940 TGAAATCAACAAGGAGACAGTTGGAGAGAGAGCTGATGCTGGAAGACAT-A-ATGCATCT 997
|||||||||||||| | || ||||||||||| | ||| | |||||||| | | | |||
Sbjct 926 TGAAATCAACAAGGCGGCAACTGGAGAGAGAGATTATGATTGAAGACATTACAAG--TCT 983
Query 998 TGAGGACTTACCCTCCTAC-GCTCTTCTCAATCAATAGC 1035
|| || || || || ||| | |||||||| ||||||||
Sbjct 984 CGAAGATTTGCCATCATACAG-TCTTCTCAGTCAATAGC 1021
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 71485576080
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5