BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg483607
Length=827
Score E
Sequences producing significant alignments: (Bits) Value
AT2G44790.1 | Symbols: UCC2 | uclacyanin 2 | chr2:18461906-1846... 531 5e-150
> AT2G44790.1 | Symbols: UCC2 | uclacyanin 2 | chr2:18461906-18463309
REVERSE LENGTH=962
Length=962
Score = 531 bits (287), Expect = 5e-150
Identities = 349/377 (93%), Gaps = 12/377 (3%)
Strand=Plus/Plus
Query 426 CTCCGGGAACTCCCACGCCACCGTCTACAACTCCGGGAACTCCTACCACACCGGACTCAC 485
|||||| |||||||||||||| ||| |||||||||||||||||||||||||||| ||||
Sbjct 469 CTCCGGCCACTCCCACGCCACCTTCTTCAACTCCGGGAACTCCTACCACACCGGAATCAC 528
Query 486 CTCCGGCTGGCGGAT------CACCCACCACACCCACACCTGATTCAGGGTCAAC-T-T- 536
||||| ||||||||| ||||||||||||||||||||| | |||| ||||| | |
Sbjct 529 CTCCGTCTGGCGGATCACCCACACCCACCACACCCACACCTGGTGCAGGTTCAACTTCTC 588
Query 537 CTCCTCCTCCACCAAAGCCAAGTGGTGCGTCAAAGGGAGTGATGAGTTACGTTTTGGTCG 596
||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||| |
Sbjct 589 CTCCTCCTCCACCAAAGGCAAGTGGTGCGTCTAAGGGAGTGATGAGTTACGTTTTGGTGG 648
Query 597 GAGTCTCGATGGTTTTGGGTTATGGTTTGTGGATGTAATTGGTTTAGTGAGCCAGGGTGG 656
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 649 GAGTCTCGATGGTTTTGGGTTATGGTTTGTGGATGTAATTGGTTTAGAGAGCCAGGGTGG 708
Query 657 AGTCAGTGCTTTTGC-TTTTTAAATTATTTTGGTCTTTGGTTGTAAGAGAAGTTGGGTAT 715
||||||||||||||| |||||||||||||||||| |||||||||||||||| |||||| |
Sbjct 709 AGTCAGTGCTTTTGCCTTTTTAAATTATTTTGGTTTTTGGTTGTAAGAGAATTTGGGTTT 768
Query 716 GTGTGCCACGTCAGAAGCTCTTCATTATTCGTAGGATTTT-ATTAT-TCGGCATTTGATT 773
|||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||
Sbjct 769 GTGTGCCACGTCAGAAGCTCTTCATTATTCGTAGGATTTTTATTATCTCGGCATTTGATT 828
Query 774 ATCGTTATCATCATCAT 790
|||||||||||||||||
Sbjct 829 ATCGTTATCATCATCAT 845
Score = 379 bits (205), Expect = 2e-104
Identities = 314/362 (87%), Gaps = 26/362 (7%)
Strand=Plus/Plus
Query 1 GTTATATAATGACACCATAACCATTTCTTCTCTGCACAACCTTAACAATAATAATATCTC 60
||||||||||||||||||||||||||||||||| ||||| ||| || || ||||||||
Sbjct 1 GTTATATAATGACACCATAACCATTTCTTCTCTTCACAATCTTTAC---AAGAATATCTC 57
Query 61 TCTTCTA-AGT--a-aaaaaaTGGCAATGAATGGTTTGTCCAAGATGGCTGCAGCCGCCG 116
||||||| ||| | |||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 58 TCTTCTACAGTAAACAAAAAATGGCAATGAATGGTTTGTCCAAGATGGCTGTAGCCGCCG 117
Query 117 CAACTGCTCTTCTCCTAGTCCTGACCATTGTCCCGGCCACAGTAGCTGTGACTTACACGG 176
||||||||||||||||||| |||||||||||||||| | |||||||||||||||||||
Sbjct 118 CAACTGCTCTTCTCCTAGTTCTGACCATTGTCCCGGGCGCAGTAGCTGTGACTTACACTA 177
Query 177 TGGGAGACGGTCAACAATGGGACAGTGGTGTGGACTACACAGTTTGGGTTGCCGGAAAGA 236
| | | | || | || | ||||||||||||| ||| ||||| | |||||||||
Sbjct 178 TTG-A-ATGGAC--CA------C--TGGTGTGGACTACTCAGGTTGGGCTACCGGAAAGA 225
Query 237 CTTTCAGGGTTGGTGACGTTCTAGAAACAAGTTCAAGTATGGT-CGATCACACTCGGTGG 295
||||||||||||||||| ||||||| ||||||||||||| | || ||| ||||||
Sbjct 226 CTTTCAGGGTTGGTGACATTCTAGA-----GTTCAAGTATGGTTCT-TCCCACACGGTGG 279
Query 296 ATGTGGTTGACAAAGCCGGATATGATGGCTGCGATGCCTCCTCCTCGACTGAGAACCATT 355
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 280 ATGTGGTTGACAAAGCCGGATATGATGGCTGCGACGCCTCCTCCTCGACTGAGAACCATT 339
Query 356 CC 357
||
Sbjct 340 CC 341
Score = 99.0 bits (53), Expect = 6e-20
Identities = 69/77 (90%), Gaps = 0/77 (0%)
Strand=Plus/Plus
Query 362 CTAGCCGCTACTGTCTTAGCCGCCTCTGCCGGACCTCCGGCCACTCCCACGCCCCCGTCA 421
||||||| || |||| |||||| ||||||||||||||||||||||||||||| || ||
Sbjct 435 CTAGCCGTTAATGTCGTAGCCGGTTCTGCCGGACCTCCGGCCACTCCCACGCCACCTTCT 494
Query 422 TCAACTCCGGGAACTCC 438
|||||||||||||||||
Sbjct 495 TCAACTCCGGGAACTCC 511
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40287785894
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5