BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg483610
Length=947
Score E
Sequences producing significant alignments: (Bits) Value
AT2G44820.2 | Symbols: | unknown protein; Has 70 Blast hits to... 1155 0.0
> AT2G44820.2 | Symbols: | unknown protein; Has 70 Blast hits
to 70 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa
- 9; Fungi - 4; Plants - 47; Viruses - 0; Other Eukaryotes
- 10 (source: NCBI BLink). | chr2:18484351-18485816 FORWARD
LENGTH=1032
Length=1032
Score = 1155 bits (625), Expect = 0.0
Identities = 853/960 (89%), Gaps = 28/960 (3%)
Strand=Plus/Plus
Query 1 CTCCGCCATTGAAACCCTAAAC-CC-CTTAT-CGAT-TTTCACTGTTCATCAATCACTCT 56
|||||||| ||||||||||||| || ||| | |||| |||||||||||||||||| ||||
Sbjct 1 CTCCGCCAGTGAAACCCTAAACTCCTCTT-TCCGATATTTCACTGTTCATCAATCGCTCT 59
Query 57 GCGCCACTCTCCCTATCAAGCTTCTTCAATTTTCCTCTGAGA-CCAGTCGTGATTTTGCA 115
||| |||||| |||| |||||| ||| ||||||||||| | | ||| |||||||||||||
Sbjct 60 GCGTCACTCTTCCTAGCAAGCTCCTTTAATTTTCCTCTCA-ATCCAATCGTGATTTTGCA 118
Query 116 GA-TTGTTTTGTCTCAGGAAGATTCAAAATCA-GAATGTATAATCGCAGGCCAATGGAGA 173
| | || |||| || | | |||| | | ||||||| |||| | |||||||||
Sbjct 119 TACCCATCAGGTTTCAGAAAAACT-GAAATAATG-GTGTATAAGCGCAAGTCAATGGAGA 176
Query 174 AGAAAAAGGAAGGCATGGG-T-T-CTATTGACCAAGACCTCAGCTTTAGGAAGATTATGA 230
||||||||||||||||||| | | ||||||| ||| |||| ||||||| ||| |||||||
Sbjct 177 AGAAAAAGGAAGGCATGGGTTCTACTATTGATCAAAACCTGAGCTTTAAGAATATTATGA 236
Query 231 AAGATGTTGAACTCTTTGGCTCTTCGCATATGACATGGAAGGATAAGAAAGCATTGGAGA 290
||||||||| ||||||||| ||||||||||||||||||||||||||||||||| |||||
Sbjct 237 AAGATGTTGCACTCTTTGGTTCTTCGCATATGACATGGAAGGATAAGAAAGCACTGGAGG 296
Query 291 ACAAGAAGGTGACTGCACTCGGTGGAAAGCCTCAAAAGATGCATAGGCTACCTCTGAGTG 350
| ||||| ||||||||||| ||||||||| | |||||||||||||||||||| |||||||
Sbjct 297 ATAAGAAAGTGACTGCACTTGGTGGAAAGGCACAAAAGATGCATAGGCTACCGCTGAGTG 356
Query 351 TAGCTagagtacagatgaagaaacagaaagatagagaagagaagatgttagaacagaaTA 410
||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 357 TAGCTCGAGTGCAGATGAAGAAACAGAAAGATAGAGAAGAGAAGATGTTAGAACAGAATG 416
Query 411 TGATTCTTGGCAGATTTGGTGGGGGTGGAAGTAGTAGTAGGAAACCCGCAGAGAGGAAGC 470
|||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||
Sbjct 417 TGATTCTTGGCAGATTTGGTGGGGGTGGAAGTAGCAGTAGGAAACCCGCAGAGAGAAAGC 476
Query 471 GTACGCCAGAAGAGAGAGTCTTGAAGTCAACTGTAGGGATTTTCAAAGGCGGTGTTCTTG 530
||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||
Sbjct 477 GTACGCCAGAAGAGAGAGTATTGAAGTCAACTGGAGGGATTTTCAAAGGCGGTGTTCTTG 536
Query 531 ATGTTAGGCATTTGCTACACTCTGGTTCTTCAAGTACTAATGACAGAGATTTCAAGATGA 590
|||||| ||||||||||| |||||| ||||||||| || ||||||||||||||||| ||
Sbjct 537 ATGTTAAGCATTTGCTACGTTCTGGTCCTTCAAGTAGTAGTGACAGAGATTTCAAGACGA 596
Query 591 AGAAACCTGGTAAGATCGAGAAGAACTTGGGAGGAGGAGGTGATGGAGGAGGCATCAAGT 650
||||||| ||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 597 AGAAACCCAGTAGGGTCGAGAAGAACTTGGGAGGAGGAGGTGATGGAGGAGGCATCAAGT 656
Query 651 CTaagggaaagaagaaaggaggcaaaaagaagaataaaggaaagaagaagaaaggaggcg 710
|||||||||| ||||||||||||||||| |||||||||||||||||||| | ||||| |
Sbjct 657 CTAAGGGAAAAAAGAAAGGAGGCAAAAATAAGAATAAAGGAAAGAAGAA-A--GGAGGTG 713
Query 711 gtaaaaagaaaggcaagTAATCGCGTTAGCTAGCTCTGTAACAATTTTTGAAGCAAAGGT 770
| || |||| ||||||||||||||| | |||||||||||||| ||||||||| | |
Sbjct 714 GCAAGAAGAGAGGCAAGTAATCGCG---G-TAGCTCTGTAACAAGTTTTGAAGC---G-T 765
Query 771 TTCAAGCATCGCTGTATACTTCACAAGGATTAATCTTGGAATTGAACATTACAGTAAAAG 830
|||||| ||| |||||||||||||||||||| |||||||||| ||||||||||| ||||
Sbjct 766 TTCAAGTATCATTGTATACTTCACAAGGATTACTCTTGGAATTCAACATTACAGTGAAAG 825
Query 831 AGCT--GAGTTTTGTTTCAAACGTGAAATGTTCTTTAGGCAGTATCCTCTCTTAGGACGA 888
|||| |||||||||| ||||| ||||||||||||| |||||||||||||||||||||||
Sbjct 826 AGCTATGAGTTTTGTTACAAACATGAAATGTTCTTTCGGCAGTATCCTCTCTTAGGACGA 885
Query 889 GTCTGTTACAGCTATTGATCTGGTTATGATTGTTTT-ATCTTCTTTATGAGTTTTGTAGA 947
||||||||||| ||||||||| |||||||||||||| |||||||||| |||| |||||||
Sbjct 886 GTCTGTTACAGGTATTGATCTTGTTATGATTGTTTTTATCTTCTTTAAGAGTATTGTAGA 945
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46315883534
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5