BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg483612
Length=2374
Score E
Sequences producing significant alignments: (Bits) Value
AT2G44830.1 | Symbols: | Protein kinase superfamily protein | ... 3895 0.0
AT5G55910.1 | Symbols: D6PK | D6 protein kinase | chr5:22639844... 204 4e-51
> AT2G44830.1 | Symbols: | Protein kinase superfamily protein
| chr2:18490129-18492816 FORWARD LENGTH=2399
Length=2399
Score = 3895 bits (2109), Expect = 0.0
Identities = 2273/2353 (97%), Gaps = 7/2353 (0%)
Strand=Plus/Plus
Query 1 GAGAGATTTGGGTTTGGTGTTAAAGATTGCATGAATGCTGGAAATGGAAAGAGTTGCTGA 60
|||||||||| ||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct 31 GAGAGATTTGTGTTTGGTGTTAAAAATCGCATGAATGCTGGAAATGGAAAGAGTTGCTGA 90
Query 61 GCTCAAGAGACTTCCTAGTAAAGGTCCTGTCTCTGGTCACTTATCGAGAAGACCATACTT 120
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 91 GCTCAAGAGACTTCCTAGTAAAGGTCCTGTCTCTGGTCACTTATCAAGAAGACCATACTT 150
Query 121 AGACTTGGAAACTAGAGATGCCAATGGTATGCATTTGGAGACTTTGAGGGAACGAGCTGC 180
|||||| ||||||||||||||| |||||||||||||||| ||||||||||||||||||
Sbjct 151 AGACTTTGAAACTAGAGATGCCCCGGGTATGCATTTGGAGAGTTTGAGGGAACGAGCTGC 210
Query 181 TCGATACAACTCGGGAAGATCAGTGAATCCAACTACGACATTGGGGAGAGAACTAAGCCA 240
|||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 211 TCGATACAACACGGGAAGATCTGTGAATCCAACTACGACATTGGGGAGAGAACTAAGCCA 270
Query 241 AGTTCTGAATGTGCATAGAGAAGATATGATAATGACTCAATTTGGTGGTAACATGAATGA 300
|||||||||||||||||| ||||||||||| |||||||| ||||||||||||||||||||
Sbjct 271 AGTTCTGAATGTGCATAGGGAAGATATGATGATGACTCAGTTTGGTGGTAACATGAATGA 330
Query 301 TTTTCAGGAGTTTGAGCCTGTTGTATCGTCTGTTAGAACGATGAAGGCCAAGTATCCTTT 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 331 TTTTCAGGAGTTTGAGCCTGTTGTATCGTCTGTTAGAACGATGAAGGCCAAGTATCCTTT 390
Query 361 GTTGGAGATTGAAGAAATTGGGGCTGCTGATGATGATGTTACTTGTAAGGGAAGCAATGA 420
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 391 GTTGGAGATTGAAGAAATTGGAGCTGCTGATGATGATGTTACTTGTAAGGGAAGCAATGA 450
Query 421 TATGTCTGAGGAAGCTGGTTCTAGCTCCTTCCGTGGAGTTAGTCATCCTCCTGAGCCTGA 480
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 451 TATGTCTGAGGAAGCTGGTTCTAGCTCCTTCCGTGGAGTTAGTCATCCTCCAGAGCCTGA 510
Query 481 CGACATGGATCTGATAACAACTGTTTATGTGCCCATTAGCGA-AAAAAGCAAACCTGATT 539
||| |||||||| ||||||||||||||||||||||| ||||| ||||| |||||||||||
Sbjct 511 CGATATGGATCTAATAACAACTGTTTATGTGCCCATCAGCGAGAAAAA-CAAACCTGATT 569
Query 540 CGGTTTGCTTGATGAAGAGCATGTCTACTACTAAAGGACCCTTTATCGAGGATATTTCCC 599
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 570 CGGTTTGCTTGATGAAGAGCATGTCTACTACTAAAGGACCCTTTATCGAGGATATTTCGC 629
Query 600 TCTGCGTGCCTCCGAAGAAGTCAAGCCCGGGAGTACTCTCACCCGCAGAAAGCATAGTTG 659
|||| |||||||| |||||| |||||||| ||||||| ||||| ||||||||||||||||
Sbjct 630 TCTGTGTGCCTCCAAAGAAGCCAAGCCCGAGAGTACTTTCACCTGCAGAAAGCATAGTTG 689
Query 660 AGGAACCTGCTACGTCACTGTCCCCGTTCTCTGTGGCTCGTGCATCGCAGAACACTGAAA 719
||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct 690 AGGAACCTGCTACATCGCTGTCCCCGTTCTCTGTGGCTCGTGCATCGCAGAACACTGAAA 749
Query 720 ACTCTCTGCTACCGCCAGATTCAGACAAAGAATGTGTTTGGGATGCTTCTTTGCCTCCCA 779
||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 750 ACTCTCTGCTACCACCAGATTCAGACAAAGAATGTGTTTGGGATGCTTCTCTGCCTCCCA 809
Query 780 GTACCAATGTGAGCCCACATAGCAGTAGTGTTGAAAGTATGAACTTCGCCCGGGCTATGA 839
||||||||||||||||||||||||||||||||||||||||||| || || ||||||||||
Sbjct 810 GTACCAATGTGAGCCCACATAGCAGTAGTGTTGAAAGTATGAATTTGGCTCGGGCTATGA 869
Query 840 GTATTGCTAATAGCTCTTCTGCAACAAGTACTACTCAGCGGAGCGATGTTGTGCTTAGTA 899
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 870 GTATTGCTAATAGCTCTTCTGCAACAAGTACTACTCAGCGGAGCGATGTTGTGCTTAGTA 929
Query 900 TGGACAAGAACTACTGTGACAGGAGTATCAGTATGGTTTTAGATTCGTTTGAAAGCACCA 959
||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||
Sbjct 930 TGGACAAGAACTACTTTGACAGGAGTATCAGTATGGTTTTGGATTCGTTTGAAAGCACCA 989
Query 960 AGACGAGTGCAAGCAGAGCAAGCGATAGTAGCGGCCTAAGCGAAGAGAGCAGCTGGAGCA 1019
|||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 990 AGACCAGTGCAAGCAGAGCAAGTGATAGTAGCGGCCTAAGCGAAGAGAGCAGCTGGAGCA 1049
Query 1020 ATTTCACGGGAAGCCTTAATAAGCCTCACAAAGGGAATGATCCTTGGTGGAATGCTATCT 1079
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1050 ATTTCACGGGAAGCCTTAATAAGCCACACAAAGGGAATGATCCTTGGTGGAATGCTATCT 1109
Query 1080 TGGCTATCCGAACCCGAGATGGGATTTTGGGAATGAGCCACTTCAAGTTGCTGAAACGGT 1139
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1110 TGGCTATCCGAACCCGAGATGGGATTTTGGGAATGAGCCACTTCAAGTTGCTGAAACGAT 1169
Query 1140 TAGGTTGTGGTGATATTGGGAGTGTCTATCTGGCTGAATTGAGCGGAACTCGGTGCCATT 1199
|||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||
Sbjct 1170 TAGGTTGTGGTGATATTGGGAGTGTCTATCTGGCTGAATTAAGCGGAACTCGATGCCATT 1229
Query 1200 TTGCTGTGAAAGTCATGGATAAAGCGTCTCTTGAGGACCGGAAGAAGTTGAATCGAGCTC 1259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1230 TTGCTGTGAAAGTCATGGATAAAGCGTCTCTTGAGGACCGGAAGAAGTTGAATCGAGCTC 1289
Query 1260 AGACCGAGAGGGATATTCTACAACTATTGGATCATCCGTTTCTACCGACATTGTACACTC 1319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1290 AGACCGAGAGGGATATTCTACAACTATTGGATCATCCGTTTCTACCGACATTGTACACTC 1349
Query 1320 ATTTTGAGACAGACAGATTCTCGTGTTTGGTCATGGAATACTGTCCTGGAGGTGATCTGC 1379
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1350 ATTTTGAGACTGACAGATTCTCGTGTTTGGTCATGGAATACTGTCCTGGAGGTGATCTGC 1409
Query 1380 ACACTTTAAGGCAACGTCAACCCGGGAAGCATTTCTCGGAGTACGCAGCTCGATTTTATG 1439
||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||| |
Sbjct 1410 ACACTCTAAGGCAACGTCAACCCGGGAAGCATTTCTCGGAGTACGCTGCTCGATTTTACG 1469
Query 1440 CTGCAGAGGTGTTGCTAGCGCTCGAGTATCTCCACATGCTTGGTGTTGTTTACAGAGACT 1499
||||||||||||||||||| || ||||||||||||||||| |||||||||||||||||||
Sbjct 1470 CTGCAGAGGTGTTGCTAGCACTAGAGTATCTCCACATGCTCGGTGTTGTTTACAGAGACT 1529
Query 1500 TGAAACCTGAGAATGTTCTGGTTCGAGATGACGGTCACATAATGCTTTCAGACTTCGATC 1559
|||| |||||||||||||||||||||||||| ||||||||||||||||||||||| ||||
Sbjct 1530 TGAAGCCTGAGAATGTTCTGGTTCGAGATGATGGTCACATAATGCTTTCAGACTTTGATC 1589
Query 1560 TCTCCCTAAGATGTGCGGTTTCTCCAACACTGATCAAAACATTCGACTCCGATCCATCTA 1619
||||| | || || |||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1590 TCTCCTTGAGGTGCGCGGTTTCGCCAACACTGATCAAAACATTCGACTCCGATCCATCTA 1649
Query 1620 GACGAGGCGCATTCTGCGTTCAACCCGCTTGTATGGAGCCTACATCAGCTTGCATTATCC 1679
||||||||||||||||||||||||| ||||||||||||||||||||||||||||| || |
Sbjct 1650 GACGAGGCGCATTCTGCGTTCAACCTGCTTGTATGGAGCCTACATCAGCTTGCATCATTC 1709
Query 1680 AACCCTCATGCTTCTTACCGCGCAGCATCTTCCCTAACAAAAACAAAAAGAACAAGACCC 1739
||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||
Sbjct 1710 AACCCTCATGCTTCTTACCGCGCAGCATCTTCCCTAACAAAAACAAAAAAAACAAGTCCC 1769
Query 1740 GTAAAACCCAGGCGGATTTCTTCAAATCACACGCTGGTTCTCTCCCAGAGCTAGTAGCTG 1799
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1770 GTAAAACCCAGGCGGATTTCTTCAAATCACACTCTGGTTCTCTCCCAGAGCTAGTAGCTG 1829
Query 1800 AACCTAACACACGGTCCATGTCCTTTGTCGGAACCCACGAGTACTTAGCTCCAGAGATCA 1859
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1830 AACCTAACACACGGTCCATGTCCTTTGTTGGAACCCACGAGTACTTAGCTCCAGAGATCA 1889
Query 1860 TCAAAGGAGAAGGACACGGAAGCGCAGTGGATTGGTGGACTTTTGGTATCTTCGTGCACG 1919
|||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| |
Sbjct 1890 TCAAAGGAGAAGGACATGGAAGCGCAGTGGATTGGTGGACTTTTGGTATCTTTGTGCATG 1949
Query 1920 AGCTCCTATACGGGAAAACTCCGTTCAAAGGATCAGGAAATCGAGCTACTCTGTTCAATG 1979
|||||||||| |||||||| ||||| ||||||||||||||||||||||||||||||||||
Sbjct 1950 AGCTCCTATATGGGAAAACCCCGTTTAAAGGATCAGGAAATCGAGCTACTCTGTTCAATG 2009
Query 1980 TAGTCGGCGAACAGTTGAAATTCCCTGAGTCACCAGCAACTAGCTACGCAGGCAGGGACT 2039
||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||
Sbjct 2010 TAGTCGGCGAACAGTTGAAATTCCCCGAGTCACCAGCAACTAGCTATGCAGGCAGGGACT 2069
Query 2040 TGATACAGGCTTTACTGGTGAAAGATCCAAAGAACAGGTTAGGGACAAAGAGAGGAGCAA 2099
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2070 TGATACAGGCTTTACTGGTGAAAGATCCAAAGAACAGGTTAGGGACAAAGAGAGGAGCAA 2129
Query 2100 CAGAGATAAAGCAGCATCCGTTCTTTGAAGGTGTGAATTGGGCATTGATAAGGTGTAGCA 2159
| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 2130 CGGAGATAAAGCAGCATCCATTCTTTGAAGGTGTGAATTGGGCATTGATAAGGTGTAGCA 2189
Query 2160 CTCCACCTGAAGTACCGAGACAGATGGAGACCGAACCGCCACCAAAGTATGGACCGATTG 2219
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2190 CTCCACCTGAAGTACCGAGACAGATGGAGACCGAACCGCCACCAAAGTATGGACCGATTG 2249
Query 2220 ATCCGGTTGGGTTTGGTAGTAATAGCAAAAGGATGATGGGACCACCAGCAGTATCAGCAG 2279
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2250 ATCCGGTTGGGTTTGGTAGTAATAGCAAAAGGATGATGGGACCACCAGCAGTATCAGCAG 2309
Query 2280 CAGCAG-A--CACGAAATCTGGTGGTAAATTTCTAGACTTTGAGTTTTTCTAAAGCTTCC 2336
|||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2310 CAGCAGCAGACACGAAATCTGGTGGTAAATTTCTAGACTTTGAGTTTTTCTAAAGCTTCC 2369
Query 2337 AAGAGTTTGTGTT 2349
|||| |||| |||
Sbjct 2370 AAGA-TTTG-GTT 2380
> AT5G55910.1 | Symbols: D6PK | D6 protein kinase | chr5:22639844-22642354
REVERSE LENGTH=2065
Length=2065
Score = 204 bits (110), Expect = 4e-51
Identities = 261/333 (78%), Gaps = 14/333 (4%)
Strand=Plus/Plus
Query 1817 ATGTCCTTTGTCGGAACCCACGAGTACTTAGCTCCAGAGATCATCAAAGGAGAAGGACAC 1876
||||| ||||| || || |||||||||||||||||||||||||||||||| ||||||||
Sbjct 1387 ATGTCTTTTGTTGGCACACACGAGTACTTAGCTCCAGAGATCATCAAAGGTGAAGGACAT 1446
Query 1877 GGAAGCGCAGTGGATTGGTGGACTTTTGGTATCTT-CGTGCACGAGCTCCTATACGGGAA 1935
||||| ||||| ||||||||||| ||||| ||||| | | | || || | | || ||
Sbjct 1447 GGAAGTGCAGTTGATTGGTGGACCTTTGGGATCTTTCTTT-ATGAACTATTGTTTGGTAA 1505
Query 1936 AACTCCGTTCAAAGGATCAGGAAATCGAGCTACTCTGTTCAATGTAGTCGG-CGAACAG- 1993
||| ||||| ||||| |||||||||||||| || || ||||| || || || | | |
Sbjct 1506 AACACCGTTTAAAGGGTCAGGAAATCGAGCAACGCTCTTCAACGTGGTTGGTC-AGCCTC 1564
Query 1994 TTGAAATTCCCTGAGTCACCAGCAACTAGCTACGCAGGC-AGGGACTTGATACAGGC-TT 2051
|| | ||||||||| || || | ||||| ||||| | ||||| |||||| ||| ||
Sbjct 1565 TT-AGATTCCCTGAATCTCCGGTTGTTAGCTTCGCAG-CTAGGGATTTGATA-AGGAGTT 1621
Query 2052 TACTGGTGAAAGATCCA-AAGAACAGGTTAGGG-ACAAAGAGAGGAGCAACAGAGATAAA 2109
| || ||||| || ||| || | || |||| | || | | |||||||||||||||||
Sbjct 1622 TGCTTGTGAAGGAGCCACAACAT-AGATTAGCTTATAA-GCGTGGAGCAACAGAGATAAA 1679
Query 2110 GCAGCATCCGTTCTTTGAAGGTGTGAATTGGGC 2142
||| ||||| ||||||||||| |||||||||||
Sbjct 1680 GCAACATCCTTTCTTTGAAGGAGTGAATTGGGC 1712
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 117870879660
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5