BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg483616
Length=840
Score E
Sequences producing significant alignments: (Bits) Value
AT2G44860.1 | Symbols: | Ribosomal protein L24e family protein... 1144 0.0
> AT2G44860.1 | Symbols: | Ribosomal protein L24e family protein
| chr2:18500803-18502562 REVERSE LENGTH=857
Length=857
Score = 1144 bits (619), Expect = 0.0
Identities = 775/848 (91%), Gaps = 20/848 (2%)
Strand=Plus/Plus
Query 1 TCTTCTTCTCTTTAGACCTCTTTTTTCTTC--GGGGGCTCTAAAGCGAAACCCTTTTGCT 58
||||||||||||||||||| |||||||| | |||||||||||||| |||||||||| |
Sbjct 22 TCTTCTTCTCTTTAGACCT-TTTTTTCTGCAGGGGGGCTCTAAAGCAAAACCCTTTT-CC 79
Query 59 TGAAATCGCTC-TCGCAAATTAGAAGAATCACCTACAG-GTTTACTTCGGTTTTCCAAGA 116
||||||||| | |||||||||||||||||||||||||| ||| | |||||| |||||
Sbjct 80 TGAAATCGC-CGTCGCAAATTAGAAGAATCACCTACAGTCTTTTGTAGGGTTTT-CAAGA 137
Query 117 CGGGGCAATATGAGATTGGTCAAGTGTTGGTTTTGCTCTTCCACAATATATCCTGGTCAC 176
|| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 138 CGAGGCAATATGAGATTGGAGAAGTGTTGGTTTTGCTCTTCCACAATATATCCTGGTCAT 197
Query 177 GGTATTCAGTTTGTCCGCAACGATGCCAAGATTTTCCGGTTCTGTAGGTCGAAATGTCAC 236
|||||||| |||||||| |||||||||||||| |||||||||||||||||||| ||||||
Sbjct 198 GGTATTCAATTTGTCCGTAACGATGCCAAGATATTCCGGTTCTGTAGGTCGAAGTGTCAC 257
Query 237 AAGAACTTCAAGATGAAGAGAAACCCGCGTAAAGTGAAATGGACTAAAGCATTCAGAGCG 296
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 258 AAGAACTTCAAGATGAAGAGAAACCCACGTAAAGTGAAATGGACTAAAGCATTCAGAGCT 317
Query 297 GCACACGGGAAGGACATGACTAAGGATAAAACATTTGAGTTTGAGAAGAAGAGAAACAGA 356
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 318 GCACACGGGAAGGACATGACTAAGGATACAACATTTGAGTTTGAGAAGAAGAGAAACAGA 377
Query 357 CCTGAGAGATACGACAGGAACGTAACAGAGAATACACTCAAGGCCATGAAGAAGATTGAT 416
||||||||||||||||||||||| |||||||||||||||| |||||| |||||||||| |
Sbjct 378 CCTGAGAGATACGACAGGAACGTTACAGAGAATACACTCATGGCCATTAAGAAGATTGCT 437
Query 417 AAGATCAGAAGCGCAAGGGAAGCCAAACATATTGAAAATAGGTTGAAGCCAAACAAACAG 476
|||||||||| ||||||||||||||||||||| ||||||||||||||||||||||| |||
Sbjct 438 AAGATCAGAACCGCAAGGGAAGCCAAACATATCGAAAATAGGTTGAAGCCAAACAAGCAG 497
Query 477 AAGAAACTCCTTGACGATAAAAAAGAACACGATCA-ACACATTCATCTTGTCCAGGCTCC 535
||||||||| |||||||| ||||||| ||||| | |||||||| | |||||||||||
Sbjct 498 AAGAAACTCAATGACGATATGAAAGAACTTGATCAGA-ACATTCATATGGTCCAGGCTCC 556
Query 536 AGGGTCAGTTTCAGGGAAGATCAAAGTTGATGTTTCCGAAAAGAAGTCTGTTCAAAACGA 595
||| || ||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 557 CGGGGCA----CAG--AAGATCAAAGTTGATGTTTCCGAAAAGAAGTCTGTTCAAAACGA 610
Query 596 AGACATGGAAGAGTGATTCTGTGGAAACATTATGATCCGTTTAAAAGCCTCTCACTTACT 655
|| ||||||||||||||||||||| |||| |||||||||| |||||||||||||||||||
Sbjct 611 AGCCATGGAAGAGTGATTCTGTGGTAACAATATGATCCGTCTAAAAGCCTCTCACTTACT 670
Query 656 CTGAAGCTGGTGTCATCTTAAAGAAAAAAGCCTTCTTTAGTTTCTCTTTCCATTTGTTTT 715
|||| |||||||||||||||||||| || | ||||||||||||||||| |||||||||||
Sbjct 671 CTGATGCTGGTGTCATCTTAAAGAACAA-GTCTTCTTTAGTTTCTCTTACCATTTGTTTT 729
Query 716 TGGAGGTCTTTaaaaaaaaa---GTTTTGGTTTTTGTACTGATAAAATGACTTTAAATTG 772
|||| ||||||||||||||| |||||||||||||||||||||||| | |||||| |||
Sbjct 730 TGGAAGTCTTTAAAAAAAAAAAAGTTTTGGTTTTTGTACTGATAAAACGGCTTTAAGTTG 789
Query 773 CTTTCATTTTGCAATGTATTATTATATGTCTTATATCATGCAAATGTTTAGGAGACATCC 832
|| |||||||||||||||||||||| |||||| |||||||| |||| |||||||||||||
Sbjct 790 CTATCATTTTGCAATGTATTATTATGTGTCTTTTATCATGCGAATGGTTAGGAGACATCC 849
Query 833 ATAGCATC 840
||||||||
Sbjct 850 ATAGCATC 857
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40940829805
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5