BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg483619
Length=948
Score E
Sequences producing significant alignments: (Bits) Value
AT2G44910.1 | Symbols: ATHB4, ATHB-4, HB4 | homeobox-leucine zi... 1515 0.0
> AT2G44910.1 | Symbols: ATHB4, ATHB-4, HB4 | homeobox-leucine
zipper protein 4 | chr2:18517887-18519525 REVERSE LENGTH=957
Length=957
Score = 1515 bits (820), Expect = 0.0
Identities = 914/958 (95%), Gaps = 11/958 (1%)
Strand=Plus/Plus
Query 1 ATGGGTGAAAGAGATGATGGGTTGGGTCTGAGTCTAAGCTTGGGAAATAGTCAACAAAAA 60
||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1 ATGGGGGAAAGAGATGATGGGTTGGGTTTGAGTCTAAGCTTGGGAAATAGTCAACAAAAA 60
Query 61 GAACCATCTCTGAGGTTGAATCTTATGCCGTTGACAA---CTTCTTCTTCTTCTTCGTTT 117
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 61 GAACCATCTCTGAGGTTGAATCTTATGCCGTTGACAACTTCTTCTTCTTCTTCTTCGTTT 120
Query 118 CAACACATGCACAATCAGAATAATAATAGCCATCCCCAGAAGATTCATCACAACTCTTGG 177
||||||||||||||||||||||| |||||||||||||||||||||||| ||| |||||||
Sbjct 121 CAACACATGCACAATCAGAATAACAATAGCCATCCCCAGAAGATTCATAACATCTCTTGG 180
Query 178 ACTCATCTGTTTCAATCTTCTGGAATTAAACGTACAACTGCAGAGAGAAACTCTGACGCC 237
||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 181 ACTCATCTGTTTCAATCTTCTGGGATTAAACGTACAACTGCAGAGAGAAACTCCGACGCC 240
Query 238 GGGTCTTTTCTAAGAGGTTTCAACGTGAGCAGAGCTCCGTCTGCGGTGGCGGTGGTGGAC 297
||||| |||||||||||||||||||||| |||||||| |||| |||||||||| ||||||
Sbjct 241 GGGTCATTTCTAAGAGGTTTCAACGTGAACAGAGCTCAGTCTTCGGTGGCGGTAGTGGAC 300
Query 298 TTGGAAGAAGAAGCCGCCGTCGTCTCGTCTCCGAACAGCACCGTCTCGAGTCTGAGTGGG 357
|||||||||||||||||||||||||||||||| |||||| |||| ||||||||||||||
Sbjct 301 TTGGAAGAAGAAGCCGCCGTCGTCTCGTCTCCAAACAGCGCCGTTTCGAGTCTGAGTGGA 360
Query 358 AATAAGAGGGATCTTGCGGTGGCAAGAGGAGGAGATGAAAACGAGGCGGAGAGAGCTTCT 417
||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 361 AATAAAAGGGATCTTGCGGTGGCGAGAGGAGGAGATGAAAACGAGGCGGAGAGAGCTTCT 420
Query 418 TGCTCACGTGGAGGGGGAAGCGGTGGAAGTGACGATGAAGACGGCGGAAACGGCGACGGA 477
|||||||| ||||||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct 421 TGCTCACGCGGAGGGGGAAGCGGTGGTAGCGACGATGAAGACGGCGGAAACGGCGACGGA 480
Query 478 TCAAGGAAGAAACTCCGGTTATCGAAGGAACAAGCTCTTGTTCTCGAGGAGACTTTTAAA 537
|||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 481 TCAAGGAAGAAACTACGGTTATCGAAGGATCAAGCTCTTGTTCTCGAGGAGACTTTTAAA 540
Query 538 GAACATAGCACTCTTAATCCGAAGCAAAAGCTGGCTCTAGCAAAACAGTTGAATCTAAGG 597
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 GAACATAGCACTCTTAATCCGAAGCAAAAGCTGGCTCTAGCAAAACAGTTGAATCTAAGG 600
Query 598 GCAAGACAAGTGGAAGTGTGGTTTCAGAACCGAAGGGCAAGGACGAAGCTGAAACAAACG 657
||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 601 GCAAGACAAGTTGAAGTGTGGTTTCAGAACCGTAGGGCAAGGACGAAGCTGAAACAAACG 660
Query 658 GAGGTTGATTGTGAGTATTTGAAGAGATGTTGCGATAGTCTGACGGAGGAGAATCGACGG 717
|||||||||||||||||||| |||||||||||||||| |||||| |||||||||||||||
Sbjct 661 GAGGTTGATTGTGAGTATTTAAAGAGATGTTGCGATAATCTGACCGAGGAGAATCGACGG 720
Query 718 TTGCAGAAAGAAGTGTCGGAGCTGAGAGCGTTGAAGTTGTCTCCACATCTCTACATGCAT 777
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 721 CTGCAGAAAGAAGTGTCGGAGCTGAGGGCGTTGAAGTTGTCTCCACATCTCTACATGCAC 780
Query 778 ATGACTCCTCCTACTACTCTCACCATGTGCCCTTCTTGCGAACGTGTCTCCTCCTCTGCC 837
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 781 ATGACTCCTCCTACTACTCTCACCATGTGCCCTTCTTGCGAACGTGTCTCCTCCTCTGCC 840
Query 838 GCCACTGTGACGGCTGCTCCT-CC--TACTACT-C-C-TACGGTGGTGGGGCGGCCAAGT 891
||||||||||| ||||||||| || ||||||| | | ||||||||||||||||||||||
Sbjct 841 GCCACTGTGACCGCTGCTCCTTCCACTACTACTACTCCTACGGTGGTGGGGCGGCCAAGT 900
Query 892 CCACAGCGATTAACTCCGTGGACTAG-TATTTCTCTCCAGCAAAAATCAGGTCGCTAG 948
||||||||||||||||| |||||| | |||||||||||||||||||||||||||||||
Sbjct 901 CCACAGCGATTAACTCCTTGGACT-GCTATTTCTCTCCAGCAAAAATCAGGTCGCTAG 957
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46366117681
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5