BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg483621
Length=907
Score E
Sequences producing significant alignments: (Bits) Value
AT2G44920.2 | Symbols: | Tetratricopeptide repeat (TPR)-like s... 1177 0.0
> AT2G44920.2 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr2:18524387-18526827 FORWARD LENGTH=1032
Length=1032
Score = 1177 bits (637), Expect = 0.0
Identities = 736/783 (94%), Gaps = 9/783 (1%)
Strand=Plus/Plus
Query 1 AAAACaaaaaaaaaTGGTAATTCTCAGCAACGTCTCGTTGTTCTCCTGCTGCAACATCTC 60
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 20 AAAAAAAAAAAAAATGGTAATTCTCAGCAACGTCTCGTTGTTCTCCTGCTGCAACATCTC 79
Query 61 TCAGAAACCATCTCTCTCTTCTCCGTCTTCTCGTAATTCTCATTGTCCCCTTCGTTACTC 120
||||||||||||||||| ||||||||||||||||| ||||||||||||| |||||| |||
Sbjct 80 TCAGAAACCATCTCTCTTTTCTCCGTCTTCTCGTAGTTCTCATTGTCCCATTCGTTGCTC 139
Query 121 TCAGGTAACCTCGCAGGAAGGAAAAGAAGTTGTTGTTAGTCCTTTGAGAAGTGTGGTTTG 180
|| | || |||||||| |||||||| ||| |||||||||||||||||||||||
Sbjct 140 ACA-G-----TCACAGGAAGGGAAAGAAGTGGTTACCAGTCCTTTGAGAAGTGTGGTTTG 193
Query 181 GTCATTAGGAGAAGAGGTTTCTAAGAGAAGTCTACTTGCTCTTGTCTCTGCTTCTCTCTT 240
||||||||||||||||||||| |||||||||||| |||| ||||||||||||||||||||
Sbjct 194 GTCATTAGGAGAAGAGGTTTCAAAGAGAAGTCTATTTGCACTTGTCTCTGCTTCTCTCTT 253
Query 241 CTTTGCTCATCCTGCTCTTGCTTTTAAGGGTGGAGGTCCATATGGACAAGGAGTCACCAG 300
||||| | ||||||||||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct 254 CTTTGTTGATCCTGCTCTTGCTTTTAAGGGTGGAGGTCCCTATGGTCAAGGAGTCACCAG 313
Query 301 GGGACAGGACTTATCCGGCAAAGATTTCAGTGGCCAGACTCTTATCAGGCAGGACTTCAA 360
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 314 GGGACAGGACTTATCTGGCAAAGATTTCAGTGGCCAGACTCTTATCAGGCAGGACTTCAA 373
Query 361 GACGTCCATCCTAAGGCAAGCCAACTTCAAGGGTGCGAAGTTGTTAGGTGCTAGCTTCTT 420
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 374 AACGTCCATCCTAAGGCAAGCCAACTTCAAGGGTGCAAAGTTGTTAGGTGCTAGCTTCTT 433
Query 421 TGATGCAGATCTAACAGGTGCTGATTTATCGGAAGCTGATCTCCGAGGTGCAGATTTCTC 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 434 TGATGCAGATCTAACAGGTGCTGATTTATCGGAAGCTGATCTCCGAGGTGCAGATTTCTC 493
Query 481 CTTGGCAAACGTAACAAAGGTGAATTTAACGAACGCTAACTTGGAAGGAGCGACTGCTAC 540
||||||||| ||||||||||||||| |||||||||||||||| ||||||||||||| |||
Sbjct 494 CTTGGCAAATGTAACAAAGGTGAATCTAACGAACGCTAACTTAGAAGGAGCGACTGTTAC 553
Query 541 TGGAAACACATCATTCAAGGGATCAAACATTACAGGCGCAGACTTCACCGATGTCCCTCT 600
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 554 TGGAAACACATCATTCAAGGGATCAAACATTACAGGCGCAGACTTCACTGATGTCCCTCT 613
Query 601 AAGAGATGATCAACGAGTATACCTTTGCAAAATCGCGGATGGAGTTAACGCGACTACTGG 660
|||||||||||| |||||||||||||||||| | ||||||||||||||||||||||||||
Sbjct 614 AAGAGATGATCAGCGAGTATACCTTTGCAAAGTTGCGGATGGAGTTAACGCGACTACTGG 673
Query 661 GAATGCAACGCGAGACACATTGCTCTGCAACTAAACTGTGAAATCTAAAGCTTTGGACTG 720
|||||||||||| ||||||||||| |||||||||||| |||||| |||||||||||||||
Sbjct 674 GAATGCAACGCGGGACACATTGCTTTGCAACTAAACTATGAAATGTAAAGCTTTGGACTG 733
Query 721 TTGGAGTCTTCTTCTTATAAttttt-tttCGAGGTTTGAGCATTG-TGAAGCTTGTTGTG 778
| ||||||||||||||||||||||| ||| ||| ||||| ||||| |||||||| |||||
Sbjct 734 TGGGAGTCTTCTTCTTATAATTTTTCTTT-GAGATTTGACCATTGGTGAAGCTTTTTGTG 792
Query 779 CAT 781
|||
Sbjct 793 CAT 795
Score = 93.5 bits (50), Expect = 3e-18
Identities = 56/59 (95%), Gaps = 0/59 (0%)
Strand=Plus/Plus
Query 849 CTACTGTTTTTTGTTTTATTTATTGGTGTGAATCACAAGTATTATTATGACAttttttt 907
|||||| |||||||||||||||||||| ||||||||||| |||||||||||||||||||
Sbjct 905 CTACTGGTTTTTGTTTTATTTATTGGTCTGAATCACAAGAATTATTATGACATTTTTTT 963
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44306517654
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5