BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg483623
Length=996
Score E
Sequences producing significant alignments: (Bits) Value
AT2G44940.1 | Symbols: | Integrase-type DNA-binding superfamil... 1338 0.0
AT5G52020.1 | Symbols: | Integrase-type DNA-binding superfamil... 76.8 4e-13
> AT2G44940.1 | Symbols: | Integrase-type DNA-binding superfamily
protein | chr2:18537257-18538418 FORWARD LENGTH=1162
Length=1162
Score = 1338 bits (724), Expect = 0.0
Identities = 922/1011 (91%), Gaps = 39/1011 (4%)
Strand=Plus/Plus
Query 1 GTGCAACCATCTCTCTAAAG---CTTCTCTCATAACAATGGAAAGACAAATCAACATAGA 57
|||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||
Sbjct 1 GTGCAACCATCTCTCTAAAGCTTCTTCTCTCATAACAATGGCAAGACAAATCAACATAGA 60
Query 58 GAGTAGTGTTTCTCAAGTAACCTTTATCTCCTCCGCCATCTTCGCCGTA---TCCTCCTC 114
|||||||||||||||||| ||||||||||||||||||||| ||||||| ||||||||
Sbjct 61 GAGTAGTGTTTCTCAAGTTACCTTTATCTCCTCCGCCATCCCCGCCGTATCTTCCTCCTC 120
Query 115 CTCCGTCTCTGCAGCGGCCTCATTGTCCTCTTCACCTACGACATCTTCTTCTTCTTCATC 174
|||| || | || | ||||||||||||||||||||||| |||||||| | ||||| ||
Sbjct 121 CTCCATCACCGCTTCCGCCTCATTGTCCTCTTCACCTACTACATCTTC--C-TCTTCTTC 177
Query 175 GTCATCAACAAGTTCTAACTTCATTGAGGAAGACAACTCTAAAAGAAAAGCATCTCGAAG 234
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 178 GTCATCAACAAATTCTAACTTCATTGAGGAAGACAACTCTAAAAGAAAAGCATCTCGAAG 237
Query 235 ---A---TCA---TTAGCCTCCGTTGAAGAC---GATGATCGAAACGATGGAGGAGGAAA 282
| ||| |||| ||||||||||||| ||||||| ||||| |||||| || ||
Sbjct 238 ATCATTGTCATCGTTAGTCTCCGTTGAAGACGATGATGATCAAAACGGTGGAGGTGGGAA 297
Query 283 ACGGCGAAAGACCAGCGGTGGAGATAAACATCCGACGTATAGAGGAGT-ACGGATGAGAA 341
|||||||||||||| ||||||||||||||||||||||||||||||||| | ||||||| |
Sbjct 298 ACGGCGAAAGACCAACGGTGGAGATAAACATCCGACGTATAGAGGAGTGA-GGATGAGGA 356
Query 342 GTTGGGGAAAATGGGTATCGGAGATTAGAGAGCCGAAG-AAGAAATCAAGAATCTGGCTC 400
|||||||||||||||| |||||||||||||||||| || |||||||||||||||||||||
Sbjct 357 GTTGGGGAAAATGGGTGTCGGAGATTAGAGAGCCG-AGAAAGAAATCAAGAATCTGGCTC 415
Query 401 GGGACGTATCCAACGGCTGAGATGGCAGCTCGAGCTCATGACGTGGCGGCTTTAGCCATT 460
||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 416 GGGACTTATCCAACGGCTGAGATGGCAGCTCGAGCTCATGACGTAGCGGCTTTAGCCATT 475
Query 461 AAAGGTACAACGGCTTACCTCAATTTTCCTGAA-TTATCCGGCGAGCTTCCTCGTCCAGT 519
||||||||||||||||||||||||||||| || ||| ||||||||||||||||||||||
Sbjct 476 AAAGGTACAACGGCTTACCTCAATTTTCC-CAAGTTAGCCGGCGAGCTTCCTCGTCCAGT 534
Query 520 CACAAATTCTCCTAAAGACATTCAAGCCGCCGCCTCTTTAGCCGCCGTTAATTGGCAAGA 579
|||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||
Sbjct 535 CACAAATTCTCCTAAAGACATTCAAGCCGCCGCCTCTTTAGCGGCCGTTAACTGGCAAGA 594
Query 580 TCCGGTCAGCGATGTGAGTAATTCTGAAATAGCTGAATTAGCTGAAGCCGAGCCGAGTCG 639
| |||||| ||||||||||||||||||| | |||||| ||| ||||||||||||||||||
Sbjct 595 TTCGGTCAACGATGTGAGTAATTCTGAAGTGGCTGAAATAGTTGAAGCCGAGCCGAGTCG 654
Query 640 AGCCGTGGTGGCTCAGCTGTTTTCTTCGGACACAAGCACG--G-CGACGACTCAAAGTCA 696
|||||||||||||||| ||||||||||||||||||||||| | |||||||||| |||||
Sbjct 655 AGCCGTGGTGGCTCAGTTGTTTTCTTCGGACACAAGCACGACGACGACGACTCAGAGTCA 714
Query 697 AGAGTCTTCGGAAGCTTCGTGTGCTTCGACGTCG---TGTACGGACAAAGACAGTGAGGA 753
||||| |||||||||||||||||||||||| ||| |||||||||||||||||||||||
Sbjct 715 AGAGTATTCGGAAGCTTCGTGTGCTTCGACTTCGGCGTGTACGGACAAAGACAGTGAGGA 774
Query 754 AGAGAAGCTGTTTGATTTGCCGGACTTGTTTACCGATGAGAATGAGATGATGATACGAAA 813
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 775 AGAGAAGCTGTTTGATTTGCCGGATTTGTTTACCGATGAGAATGAGATGATGATACGAAA 834
Query 814 CGATGCGTTTTGCTATTACTCGTCCACGTGGCAGATTTGTGGAGCTGATGCTGGGTTTCG 873
||||||||||||||| |||||||||||||||||| |||||||||| ||||||||||||||
Sbjct 835 CGATGCGTTTTGCTACTACTCGTCCACGTGGCAGCTTTGTGGAGCCGATGCTGGGTTTCG 894
Query 874 GCTTGAAGAGCCGTTTTT-CTGTCTGAATGACTAAATTACCCTT-TACGAGAGAGCTC-- 929
|||||||||||||||||| || |||||||||||||| ||||| | | |||||||||||
Sbjct 895 GCTTGAAGAGCCGTTTTTTCTATCTGAATGACTAAAGTACCCCTCT-CGAGAGAGCTCTC 953
Query 930 ACTAACACTTGATTAATTTGCCcttttcttcttcttctttttctttaattt 980
|||||||||| |||| |||||| ||| |||||||||| |||||| || |||
Sbjct 954 ACTAACACTTTATTAGTTTGCCATTTACTTCTTCTTCATTTTCTCTA-TTT 1003
> AT5G52020.1 | Symbols: | Integrase-type DNA-binding superfamily
protein | chr5:21123958-21124948 REVERSE LENGTH=991
Length=991
Score = 76.8 bits (41), Expect = 4e-13
Identities = 98/123 (80%), Gaps = 13/123 (11%)
Strand=Plus/Plus
Query 347 GGAAAATGGGTATCGGAGATTAGAGAGCCGAAG-AAGAA--ATCAAGAATCTGGCTCGGG 403
||||||||||||||||||||||||||||| | | || || | ||||||| |||||||||
Sbjct 275 GGAAAATGGGTATCGGAGATTAGAGAGCC-ACGTAA-AACGA-CAAGAATTTGGCTCGGG 331
Query 404 ACGTATCCA--ACGGCTGAGATGGCAGCTCGA-GCTCATGACGTGGCGGCTTTAGCCATT 460
|| ||||| || | |||||||| || || ||| | |||||||| || ||||| ||
Sbjct 332 ACTTATCCGGTACCG--GAGATGGCTGC-CGCCGCTTACGACGTGGCTGCGTTAGCT-TT 387
Query 461 AAA 463
|||
Sbjct 388 AAA 390
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48777356737
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5