BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg483624
Length=3337
Score E
Sequences producing significant alignments: (Bits) Value
AT2G44950.1 | Symbols: RDO4, HUB1 | histone mono-ubiquitination... 5345 0.0
> AT2G44950.1 | Symbols: RDO4, HUB1 | histone mono-ubiquitination
1 | chr2:18542213-18548591 REVERSE LENGTH=3370
Length=3370
Score = 5345 bits (2894), Expect = 0.0
Identities = 3233/3386 (95%), Gaps = 65/3386 (2%)
Strand=Plus/Plus
Query 1 TCACTCTTGTTTTTGTTTCTGTGAGTGCT-T-TGTGTTGGCGTGTTTGTAATATCTTTAG 58
||||||||||||||||||||||||||||| | |||||| || |||||||||||| | ||
Sbjct 1 TCACTCTTGTTTTTGTTTCTGTGAGTGCTGTGTGTGTTCTCG-GTTTGTAATATC-TAAG 58
Query 59 TCGCACAAAGATCAG----A---------C-----A-AG-ATTAGAGTTTGGTCGAATTT 98
||||||||||||||| | | | || |||||||| || ||||||||
Sbjct 59 TCGCACAAAGATCAGACAAAGTCTGTTTGCGTTTGATAGCATTAGAGTCTGATCGAATTT 118
Query 99 GGAAGACCGGTGAGAGATTAGGG--t-ttttt-ttt-tttGTTTTAATTCCG-AGGGGAG 152
|||||||| || |||||||||| | ||||| ||| ||| |||| |||||| ||| |||
Sbjct 119 GGAAGACC--TGTGAGATTAGGGTTTCTTTTTGTTTGTTTTTTTTTATTCCGAAGGAGAG 176
Query 153 CTGCGGAGCAATT-GAATTACCTCGGTTGAAGCAATCACGTAGC-TTGGATCGTTTAGGG 210
||||||||||||| |||||||||||||| ||||||||||||||| |||||||||||||||
Sbjct 177 CTGCGGAGCAATTGGAATTACCTCGGTTAAAGCAATCACGTAGCTTTGGATCGTTTAGGG 236
Query 211 TTTTCTCATTGGGTTTGGGGGGATTTGTATTCGAGCTTCCTCAAACTCAATCTGATGATG 270
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||
Sbjct 237 TTTTCTCATTGGGTTT-GGGGGATTTGTATTCGAGCTTCCTCAAACTCAATCTGATGGTG 295
Query 271 ATGTGACACAA-GCTTAATCCTGTT-ATTGGCCGATTCTAGGGTTTTTGAATGGCGAGCA 328
|||||| |||| ||||||||||||| ||||| |||||||||||||||| |||||||||||
Sbjct 296 ATGTGAGACAAGGCTTAATCCTGTTAATTGG-CGATTCTAGGGTTTTTCAATGGCGAGCA 354
Query 329 CAGGCGAGCCTGACCGTAAAAGGCGTCACTTTAGCTCCATATCACCCTCTGAAGCTGCAG 388
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 355 CAGGCGAGCCTGACCGTAAAAGGCGTCACTTTAGCTCCATATCACCTTCTGAAGCTGCAG 414
Query 389 CCGCCGTAAAGAAACAGCCTTTCTTTTGGCCCTCCTCCGAGGACAAGCTTGATACTGCAG 448
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 415 CCGCCGTAAAGAAACAGCCTTTCTTTTGGCCCTCCTCCGAGGACAAGCTTGATACTGCAG 474
Query 449 TTCTTCAGTTCCAAAATCTGCAGCTATCACAAAAGCTAGAGGCTCAGCATGTTGAGTGTT 508
||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||
Sbjct 475 TTCTTCAGTTCCAAAATCTTAAGCTATCACAAAAGCTAGAGGCTCAGCAGGTTGAGTGTT 534
Query 509 CTATTCTTGAGGATAAACTTTCTCAGATCAAGGAAAAACAATTACCATACAGCTCCAGTT 568
||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||
Sbjct 535 CTATTCTTGAGGATAAACTCTCTCAGATCAAGGAAAAACAATTACCATACAACTCCAGTT 594
Query 569 TGAAGACTGTCCATAAGTCTTGGGAAAAGCTTACAGCTACAGTGGAATCATGCTCTGTTC 628
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 595 TGAAGACTGTCCATAAGTCTTGGGAAAAGCTTACAGCTTCAGTGGAATCATGCTCTGTTC 654
Query 629 GTGTGAGTGATTCAAGCAGCGGAGCTCATAGGTTTGTAAACAAGGAGGATGGGTCGTCTC 688
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 655 GTGTGAGTGATTCAAGCAGCGGAGCTCATAGGTTTGTAAACAAGGAGGATGGGTCTTCTC 714
Query 689 CAGCCGTGAAAAACGATTTCATCAACCGGCTACTCGAAACTGGTGCCACTGAGAGCTCCT 748
|||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||
Sbjct 715 CAGCCGTGAAAAACGATTTCATCAACCGGCTACTTGAAACTGGTGCTACTGAGAGCTCCT 774
Query 749 CATCCAATATCTGCTCGAATCGGATGGAAGAAAATGGAGTGAATACGTCAAGCCAGATGA 808
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 775 CATCCAATATCTGCTCGAATCAGATGGAAGAAAATGGAGTGAATACGTCAAGCCAGATGA 834
Query 809 CGCAAACCTTGTCTAACCTAGTAGCCGCGACAGATGATTTGAGGTGTCTGAACGATGACC 868
|||||||||||| ||| ||||||||||||||||| ||||||||||||||||| |||||
Sbjct 835 CGCAAACCTTGTATAATCTAGTAGCCGCGACAGAGGATTTGAGGTGTCTGAAGGATGA-A 893
Query 869 TT-TATCCCACAGTTCTCAGAACCAGTCTTGGTAAAGATTTGTGCGGTCAGCTAGCTCTG 927
|| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 894 TTATATCCCACAGTTCTCAGAACCAATCTTGGTAAAGATTTGTGCGGTCAGCTAGCTCTG 953
Query 928 AGTGAGTTGGAATCAGAAATTAAAAGTTTCAGAGGGGATCTAGATGATGTACTTGTGAAG 987
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 954 AGTGAGTTGGAATCAGAAATTAAAAGTTTCAGAGGGGATCTAGATGATGTACTTGTGAAG 1013
Query 988 TTCAAATCTCTTTCTAGAGAATTGCAGAGTCATCGCGATGCTGATGCTAAAGTTAGAGCA 1047
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1014 TTCAAATCACTTTCTAGAGAATTGCAGAGTCATCGCGATGCTGATGCTAAAGTTAGAGTA 1073
Query 1048 GACCTCAAACGAATAAGAGGGGAGCTAGAGGATGAGGTCGTGGAGCTTCAGCAGTGTAAT 1107
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1074 GACCTCAAACGAATAAGAGGGGAGCTAGAGGATGAGGTTGTGGAGCTTCAGCAGTGTAAT 1133
Query 1108 GGTGACTTGTCAGCATTGAGAGCAGAAAGAGATGCAACAGCAGGGGCGTTTTTCCCAGTG 1167
||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||
Sbjct 1134 GGTGACTTGTCAGCATTGAGAGCAGAAAGGGATGCAACAGCTGGGGCGTTTTTCCCAGTG 1193
Query 1168 TTGAGCCTTGGAAATAAGCTTGCTACCAGTGATAGGGAAAGGGATAAACAAAGGGATCTG 1227
||||| ||||||||||||||||||||||||||| |||| |||||||||||||||||||||
Sbjct 1194 TTGAGTCTTGGAAATAAGCTTGCTACCAGTGATCGGGAGAGGGATAAACAAAGGGATCTG 1253
Query 1228 CATGACATGGAAACAGTTCTGAAAGAGTTAACGGTCCTGGCTTCAGGCAGGCTACAAGAG 1287
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1254 CAAGACATGGAAACAGTTCTGAAAGAGTTAACGGTCCTGGCTTCAGGCAGGCTACAACAG 1313
Query 1288 CTAAAAGATCTTCATGAGGAGAGGACAAAGATGCTTGAAAAAATGAGTAATTTACAGAAC 1347
|||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1314 CTAAAAAATCTTCATGAGGAGAGGACAAAGATGCTTGGAAAAATGAGTAATTTACAGAAC 1373
Query 1348 AAGTCAAAGTCTGTGAGGTGCATCTCATCTTCTCAAGCCTGCCTTTCTTTGAAAGACCAG 1407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1374 AAGTCAAAGTCTGTGAGGTGCATCTCATCTTCTCAAGCCTGCCTTTCTTTGAAAGACCAG 1433
Query 1408 CTaaaaaaaTCCAAAGAAGCAGTTTTCCAGTATATGGCTTTACTTGAGAAACTGCAGGTT 1467
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1434 CTAGAAAAATCCAAAGAAGCAGTTTTCCAGTATATGGCTTTACTTGAGAAACTGCAGGTT 1493
Query 1468 GAAAAAGATAGTATAGTCTGGAAGGAAAGGGAGATGAATATAAAAAATGAACTAGTTGAT 1527
||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||
Sbjct 1494 GAAAAAGATAGTATAGTCTGGAAGGAAAGGGAGATAAATATAAAAAATGAACTAGGTGAT 1553
Query 1528 GTTTCTCGAAGGACTTCTGCTGTTGCTGATTCCAGAATGGCTTCTTTAGATTCGGAGATA 1587
|||||||||| ||| ||||||||| ||||||| |||||||||||||| ||||||||||||
Sbjct 1554 GTTTCTCGAAAGACGTCTGCTGTTACTGATTCTAGAATGGCTTCTTTGGATTCGGAGATA 1613
Query 1588 CAGAAACAACTGGATGAAAAAATGCGAATCAAGACTAGGCTGGGAAATATATCAAGAGAG 1647
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1614 CAGAAACAACTGGATGAAAAAATGCGAATCAAGACTAGGCTGGGAAATATATCAAGAGAG 1673
Query 1648 CGAGGTAGAAAAGAAATCTTTGCAGATATGAAGGCATTAATTTCTTCGTTCCCCGAGGAA 1707
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1674 CGAGGTAGAAAAGAAATCTTTGCAGATATGAAGGCATTAATTTCTTCGTTCCCCGAGGAA 1733
Query 1708 ATGAGTTCCATGCGTAATCAATTGGACAATTATAAAGAGACTGCTGGAGGTATTCATTCT 1767
|||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||
Sbjct 1734 ATGAGTTCCATGCGTAGTCAATTAAACAATTATAAAGAGACTGCTGGAGGTATTCATTCT 1793
Query 1768 CTACGGGCTGATGTCCAGTCCCTCTCTGGGGTTCTATGTAGGAAGACAAAAGAGTGTGAA 1827
|| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1794 CTGCGGGCTGATGTCCAGTCCCTCTCTGGGGTTCTATGTAGGAAGACAAAAGAGTATGAA 1853
Query 1828 GCATTGCATTTGACATCAGCTGATTATGCTTCTCAGTTAGGTGACCTGAATGCTACGGTT 1887
|||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1854 GCATTGCAATTGAGATCAGCTGATTATGCTTCTCAGTTAGGTGACCTGAATGCTACGGTT 1913
Query 1888 TGTGATTTGAAGAATAGTCATGAGGAGTTAAAGTTGTTTCTGGACATGTATAAACGTGAG 1947
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1914 TGTGATTTGAAGAACAGTCATGAGGAGTTAAAGTTGTTTCTGGACATGTATAAACGTGAG 1973
Query 1948 TCCACTGATCCGAGGGACATAGCTGAAGCCAAGGAACAGGAGTACAGGGCTTGGGCTCAT 2007
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1974 TCCACTGATGCGAGGGACATAGCTGAAGCCAAGGAACAGGAGTACAGGGCTTGGGCTCAT 2033
Query 2008 GTTCATAGTTTGAAATCATCCCTTGATGAGCAAAATCTGGAGTTGCGCGTTAAGGCAGCA 2067
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2034 GTTCAGAGTTTGAAATCATCCCTTGATGAGCAAAATCTGGAGTTGCGCGTTAAGGCAGCA 2093
Query 2068 AATGAAGCTGAAGCCGTTTCCCAACAAATGTTGGCTGCTGCGGAAGCAGAGATTGCTGAT 2127
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2094 AATGAAGCTGAAGCCGTTTCCCAACAAATGTTGGCTGCTGCGGAAGCAGAGATTGCTGAT 2153
Query 2128 TTAAGGCAGAAAATGGATGATTGTAAACGGGATGTCGCCAAGCATTCTGATATCTTGAAA 2187
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 2154 TTAAGGCAGAAAATGGATGATTGTAAAAGGGATGTCGCCAAGCATTCTGATATCTTGAAA 2213
Query 2188 TCTAAACATGAAGAACATGGAACATATCTTTCTGAAATACAGACAATTGGAAGTGCCTAC 2247
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2214 TCTAAACATGAAGAACATGGAACATATCTTTCTGAAATACAGACAATTGGAAGTGCCTAT 2273
Query 2248 GAGGACATTGTACCGCAAAACCAACAGCTTTTGCTTCAAGTTACAGAGAGGGATGACTAT 2307
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2274 GAGGACATTGTACCGCAAAACCAACAGCTTTTGCTTCAAGTTACAGAGAGGGATGACTAT 2333
Query 2308 AACATCAAGCTTTTCTTGGAAGGCATAAATTCAAGGCAGATGCAAGATACCCTGCTTATC 2367
|||||||||||||||||||||||||||| ||| ||||||||||||||||| |||||||||
Sbjct 2334 AACATCAAGCTTTTCTTGGAAGGCATAACTTCTAGGCAGATGCAAGATACTCTGCTTATC 2393
Query 2368 GATAAATACATCATGGATAAGGATATACAGCAAGGCAGTGCATATGCCAGTTTCCTATCC 2427
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2394 GATAAATACATCATGGATAAGGATATACAGCAAGGCAGTGCATATGCCAGTTTCCTATCC 2453
Query 2428 AAGAAATCATCAAGAATTGAAGATCAGTTGAGGTTCTGCACAGATCAGTTTCAGAAACTA 2487
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2454 AAGAAATCATCAAGAATTGAAGATCAGTTGAGGTTCTGCACAGATCAGTTTCAGAAACTA 2513
Query 2488 GCCGAAGATAAATATCAAAAGTCTGTTTCTCTTGAAAATCTGCAAAAGAAACGTGCAGAC 2547
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2514 GCGGAAGATAAATATCAAAAGTCTGTTTCTCTTGAAAATCTGCAAAAGAAACGTGCAGAC 2573
Query 2548 ATTGGGAATGGCTTGGAACAAGCTAGGTCGAGGATGGAGGAGTCCCATTCTAAAGTTGAG 2607
|| |||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||
Sbjct 2574 ATCGGGAATGGCTTGGAACAAGCTAGGTCAAGGCTGGAGGAGTCCCATTCTAAAGTTGAG 2633
Query 2608 CAAAGTCGGGTGGATTATGGGGCATTAGAACTGGAACTGGAGATTGAAAGGTTCAACAGG 2667
||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 2634 CAAAGTCGGCTGGATTATGGGGCATTAGAACTGGAACTGGAGATTGAAAGGTTCAATAGG 2693
Query 2668 AGAAGGATAGAGGAGGAAATGGAAATAGCCAAAAAGAAAGTTTCTCGTCTTCGGTCTCTC 2727
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2694 AGAAGGATAGAGGAGGAAATGGAAATAGCCAAAAAGAAAGTTTCTCGTCTTCGGTCTCTC 2753
Query 2728 ATAGAAGGATCATCGGCCATTCAAAAGCTCCGACAAGAACTCAGTGAATTCAAAGAAATT 2787
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 2754 ATAGAAGGATCATCGGCCATTCAAAAGCTCCGACAAGAACTCAGTGAATTTAAAGAAATT 2813
Query 2788 CTGAAGTGTAAGGCCTGCAACGATCGCCCAAAAGAGGTGGTGATTACGAAGTGCTACCAT 2847
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2814 CTGAAGTGTAAGGCCTGCAACGATCGCCCAAAAGAGGTGGTGATTACGAAGTGCTACCAT 2873
Query 2848 TTGTTCTGTAACCCATGTGTGCAAAAGCTCACAGGAACTCGGCaaaaaaaGTGTCCAACA 2907
|||||||| |||||||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct 2874 TTGTTCTGCAACCCATGTGTGCAAAAGCTCACAGGAACTCGACAAAAGAAGTGTCCAACA 2933
Query 2908 TGCTCAGCAAGTTTTGGGCCTAATGATATTAAACCTATCTACATATGACCACACCAAAAC 2967
||||||||||||||||| || ||||||||||||||||||||||||||||| |||||||||
Sbjct 2934 TGCTCAGCAAGTTTTGGACCAAATGATATTAAACCTATCTACATATGACCGCACCAAAAC 2993
Query 2968 TCTCTGAGCATGATGATGTATGATGAAACTGTGAACCACACACAGGTACTTTTTCTCATA 3027
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 2994 ACTCTGAGCATGATGATGTATGATGAAACTGTGAAACACACACAGGTACTTTTTCTCATA 3053
Query 3028 TAGGATAAACATTAGATCTCTCTGTAATTATTACTCTCTTTTATTGGGAAAGGTCATGAA 3087
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3054 TAGGATAAACATTAGATCTCTCTGTAATTATTACTCTCTTTTATTGGGAAAGGTCATGAA 3113
Query 3088 GAATAAT-GGTATATGGCAAATCAGAAGTTTT-GAGGAACCATTGTGGGATTTTTGATCA 3145
||||||| || ||||||||||||||| ||||| ||||||||||| ||||||||| ||| |
Sbjct 3114 GAATAATTGG-ATATGGCAAATCAGA-GTTTTTGAGGAACCATTTTGGGATTTT-GATAA 3170
Query 3146 TGTGATAGAGAATAGGTAACACTTTTAGGGTTTATGTCTTTGGCGATCCTTCCTCTTTGT 3205
||||||||||||||||||||||| ||||||||||||||||||| ||| |||||| |||||
Sbjct 3171 TGTGATAGAGAATAGGTAACACTGTTAGGGTTTATGTCTTTGGTGATACTTCCTTTTTGT 3230
Query 3206 TTGTAATTTGGAACATGGTTTCCGCAATTGATTTTTCAGTTAA-TCTTCTTTTTTGT--- 3261
|||||||||||||||||||||||||||||||||||||| |||| |||||||||||||
Sbjct 3231 TTGTAATTTGGAACATGGTTTCCGCAATTGATTTTTCAATTAAATCTTCTTTTTTGTTCT 3290
Query 3262 A--T--G---AT---CCAAACGTGTGTGTTATTGCTCTAGTGTTCTAAGATTCTCAATTT 3311
| | | || |||||||| |||| || | | ||||||||||||||||||||||
Sbjct 3291 ACATTTGTGTATGATCCAAACGTTTGTG--AT-G-T--AGTGTTCTAAGATTCTCAATTT 3344
Query 3312 AGAAAACACGAGGCAAGATTTTGGAT 3337
||||||||||||||||||||||||||
Sbjct 3345 AGAAAACACGAGGCAAGATTTTGGAT 3370
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 166052581330
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5