BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg483627
Length=2622
Score E
Sequences producing significant alignments: (Bits) Value
AT2G44980.2 | Symbols: | SNF2 domain-containing protein / heli... 4217 0.0
> AT2G44980.2 | Symbols: | SNF2 domain-containing protein / helicase
domain-containing protein | chr2:18552192-18556669 REVERSE
LENGTH=2785
Length=2785
Score = 4217 bits (2283), Expect = 0.0
Identities = 2524/2639 (96%), Gaps = 22/2639 (1%)
Strand=Plus/Plus
Query 1 ATGTCAAAAGAGAGTTCACCGCCAAAAGTCCCCT-C-C-ACGATGGAGTACGAACGGCGA 57
|||||||||||||||||||||||||||||||| | | | ||||||||||| |||||||||
Sbjct 1 ATGTCAAAAGAGAGTTCACCGCCAAAAGTCCCTTCCACGACGATGGAGTATGAACGGCGA 60
Query 58 CTTGAAGCGGCGGCGAAAATTATACTCGAGAAGGAGGCGAAA--T-------CACCTCCG 108
||||||||||||||| |||||||||||||||||||||||||| | ||||||||
Sbjct 61 CTTGAAGCGGCGGCGGAAATTATACTCGAGAAGGAGGCGAAATTTAGCAACACACCTCCG 120
Query 109 GATTGTAGAGAATTTGGGGTCACGGCGACTCTGAAGCCTCACCAAGTCGAAGGTGTCTCT 168
|||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 121 GATTGTAGTGAATTTGGGGTCACGGCGACTCTAAAGCCTCACCAAGTCGAAGGTGTCTCT 180
Query 169 TGGCTTATACAGAAATATCTACTCGGCGTCAATGTCGTTCTCGAATTGGACCAGATGGGA 228
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 TGGCTTATACAGAAATATCTACTCGGCGTCAATGTCGTTCTCGAATTGGACCAGATGGGA 240
Query 229 TTGGGAAAGACTCTCCAAGCAATTTCTTTCCTGAGTTATTTGAAGTTTCATCAAGGCTTG 288
||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||
Sbjct 241 TTGGGAAAGACTCTCCAAGCAATCTCTTTCCTGAGTTATTTGAAGTTTCGTCAAGGCTTG 300
Query 289 CCTGGGCCATTTCTCGTGCTATGTCCCTTGAGCGTAACGGATGGTTGGGTATCAGAGATA 348
|||||||||||||| |||||||||||||| || |||||||||||||||||||||||||||
Sbjct 301 CCTGGGCCATTTCTGGTGCTATGTCCCTTAAGTGTAACGGATGGTTGGGTATCAGAGATA 360
Query 349 AATAGGTTCACTCCAAATCTTGAAGTTCTTAGATATGTTGGTGATAAGTATTGCCGTCGG 408
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
Sbjct 361 AATAGGTTCACTCCAAATCTTGAAGTTCTTAGATATGTTGGCGATAAGTATTGCCGTCTG 420
Query 409 GATATGCGTAAGTCAATGTATGATCATGTCAAGAAGAGTTCTAAGGGACATTTGTTACCA 468
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 421 GATATGCGTAAGTCAATGTATGATCATGTCAAGAAGAGTTCTAAGGGACATTTCTTACCA 480
Query 469 TTTGATGTGTTGTTGACAACATATGACATAGCACTGGTCGATCAGGACTTTCTTTCTCAA 528
|||||||| ||| |||||||||||||||||||| |||| ||||| |||||||||||||||
Sbjct 481 TTTGATGTATTGCTGACAACATATGACATAGCATTGGTGGATCAAGACTTTCTTTCTCAA 540
Query 529 ATCCCTTGGCATTATGCTATAATTGATGAAGCTCAAAGACTCAAGAATCCTAACAGTGTT 588
|| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 ATTCCTTGGCAATATGCTATAATTGATGAAGCTCAAAGACTCAAGAATCCTAACAGTGTT 600
Query 589 CTGTATAATGTCTTACTTGACCAATTCCTCATTCCACGACGTCTCTTGATTACTGGCACA 648
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 601 CTGTATAATGTCTTACTTGAGCAATTCCTCATTCCACGACGTCTCTTGATTACTGGCACA 660
Query 649 CCTATTCAGAACAATCTTACCGAACTTTGGGCTCTGATGCATTTTTGCATGCCACTAGTT 708
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 CCTATCCAGAACAATCTTACCGAACTTTGGGCTCTGATGCATTTTTGCATGCCACTAGTT 720
Query 709 TTTGGGGCACTGGACCAGTTCCTTGT-CGCATTCAAAGAGACTGGGGAGGGTCTATCAGG 767
|||||| ||||||||||||||||| | ||||||||||||||||||||| |||||||||||
Sbjct 721 TTTGGGACACTGGACCAGTTCCTT-TCCGCATTCAAAGAGACTGGGGACGGTCTATCAGG 779
Query 768 TCTTGATGTATCTAATGACAAGGAAACATATAAGAGTTTGAAGTTCATCTTAGGTGCCTT 827
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 780 TCTTGATGTATCTAATGACAAGGAAACATATAAGAGTCTGAAGTTCATCTTAGGTGCCTT 839
Query 828 TATGTTGAGGCGTACAAAATCTTTGCTCATTGAGTCTGGAAATCTGGTGTTGCCACCTCT 887
|||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 840 TATGCTGAGGCGTACAAAATCTTTGCTCATTGAGTCTGGAAATCTGGTGCTGCCACCTCT 899
Query 888 CACGGAGCTAACTGTAATGGTTCCGCTCGTCAGTCTTCAAAAGAAGATATATACTTCCAT 947
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 900 CACGGAGCTAACTGTAATGGTTCCGCTCGTCAGTCTTCAAAAGAAGATATATACTTCCAT 959
Query 948 ATTGAGGAAAGAGCTTCCAGGGCTTCTCGCACTGTCTTCTGGAGGATCCAATCATACATC 1007
|||||||||||||||||||||||||| | |||||||||||||||||| |||||||| ||
Sbjct 960 TTTGAGGAAAGAGCTTCCAGGGCTTCTTGAACTGTCTTCTGGAGGATCAAATCATACGTC 1019
Query 1008 TTTACAAAATATTGTGATACAGCTTAGAAAAGCATGTAGCCACCCTTACTTATTTCCAGG 1067
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1020 TTTACAAAATATTGTGATACAGCTAAGAAAAGCATGTAGCCACCCTTACTTATTTCCAGG 1079
Query 1068 TATTGAACCGGAACCTTTTGAAGAGGGTGAACACCTTGTTCAGGCAAGTGGTAAGCTTTT 1127
||| ||||| || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1080 TATCGAACCAGAGCCTTTTGAAGAGGGTGAACACCTTGTTCAGGCAAGTGGTAAGCTTTT 1139
Query 1128 AGTTTTGGATCAATTGCTCAAGAGGCTCCATGATATTGGTCATCGTGTCCTCCTCTTTTC 1187
|||||||||||||||||||| ||||||||||||| ||| ||||||||||||||||||||
Sbjct 1140 GGTTTTGGATCAATTGCTCAAAAGGCTCCATGATAGTGGCCATCGTGTCCTCCTCTTTTC 1199
Query 1188 CCAAATGACCTCAACACTTGACATTTTGCAGGATTTTATGGAGCTTCGTAGATATTCTTA 1247
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct 1200 CCAAATGACCTCAACACTTGACATTTTGCAGGATTTTATGGAGCTTCGTAGGTATTCGTA 1259
Query 1248 TGAGCGCCTTGATGGATCAGTACGGGCTGAAGAACGATTTGCTGCGATAAAGAATTTCAG 1307
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1260 TGAGCGCCTTGATGGATCAGTACGGGCTGAAGAACGTTTTGCTGCGATAAAGAATTTCAG 1319
Query 1308 TGC-AAAAGCAGAAAGAGGATTGGATTCTGAAGTTGATGCAAGCAATGCCTTTGTTTTTA 1366
|| |||| |||||||||||||||||||||||||||||| |||||||||||||||||| |
Sbjct 1320 CGCGAAAA-CAGAAAGAGGATTGGATTCTGAAGTTGATGGAAGCAATGCCTTTGTTTTCA 1378
Query 1367 TGATCTCTACAAGAGCAGGGGGAGTCGGTTTGAATCTTGTTGCTGCTGATACTGTTATAT 1426
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1379 TGATCTCTACAAGAGCAGGGGGAGTCGGTTTGAATCTTGTTGCTGCTGATACTGTTATAT 1438
Query 1427 TTTATGAACAAGACTGGAACCCACAGGTGGATAAACAAGCTTTGCAACGAGCTCATCGAA 1486
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1439 TTTATGAACAAGACTGGAACCCACAGGTGGATAAACAAGCTTTGCAACGAGCTCATCGAA 1498
Query 1487 TTGGACAAATCAGTCATGTGTTGTCTATAAACCTCGTTACTGAACATTCTGTGGAAGAGG 1546
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1499 TTGGACAAATCAGTCATGTGCTGTCTATAAACCTCGTTACTGAACATTCTGTGGAAGAGG 1558
Query 1547 TTATTTTGAGGAGGGCAGAGAGAAAGTTGCAGCTTAGTCATAATGTTGTGGGAGATAATA 1606
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1559 TTATTTTGAGGAGGGCAGAGAGAAAGTTGCAGCTTAGTCATAATGTTGTGGGAGATAACA 1618
Query 1607 TGGAAGAGAAAGACGAAGATCGTGGTGATTTGCGGTCTCTAGTGTTTGGTTTACAAAGGT 1666
||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1619 TGGAAGAGAAAGAAGAAGATGGTGGTGATTTGCGGTCTCTAGTGTTTGGTTTACAAAGGT 1678
Query 1667 TTGATCCCGAGGAGATTCACAGTGAAGAGTCTGATAACCTGAAAATGGTAGAAATAAGTT 1726
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1679 TTGATCCCGAGGAGATTCACAATGAAGAGTCTGATAACCTGAAAATGGTAGAAATAAGTT 1738
Query 1727 CTCTTGCTGAGAAAGTTGTTGCAATACGTCAAAACGTTGAACCGGACAAGGAAGCAAGAA 1786
||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||
Sbjct 1739 CTCTTGCTGAGAAAGTTGTTGCAATACGTCAAAACGTTGAACCAGACAAGGAAGAAAGAA 1798
Query 1787 AGTTTAAAATTGATTCGAGCGACACTTTGCGAGGAAATTCATCATCGGCATGTCTGGATT 1846
|||| ||||| |||||||||||||||||| ||||||| ||||||| ||| |||||||||
Sbjct 1799 GGTTTGAAATTAATTCGAGCGACACTTTGCTAGGAAATACATCATCTGCAAGTCTGGATT 1858
Query 1847 CCGAGCTTGATGAAGCTTCTTACCTTTCATGGGTTGAGAAATTGAAGGAAGCTTCACGAT 1906
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1859 CCGAGCTTGATGAAGCTTCTTACCTTTCATGGGTTGAGAAATTGAAGGAAGCTGCACGAT 1918
Query 1907 CAAGCAAGGATGACAAAATTATGGAGTTGGGAAATAGAAAGAACTTATCTGAGGAAAGAA 1966
||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1919 CAAGCAAGGATGAAAAAATTATTGAGTTGGGAAATAGAAAGAACTTATCTGAGGAAAGAA 1978
Query 1967 ATCTGAGAATTGAGGCTGCCAGGAAAAAGGCAGAAGAGAAGAAGTTAGCCA-GTTGGGAA 2025
||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct 1979 ATCTGAGAATTGAGGCTGCCAGGAAAAAGGCAGAAGAGAAGAAGTTAGCCACGTGGGGA- 2037
Query 2026 GCACACGGTTATC-GTTCTTTGTCTGTGGAAGAACCGATCTTCCCTGATGATGTTGATTC 2084
||||||||||||| || ||||||| |||||||||||||| || |||||||||||||||||
Sbjct 2038 GCACACGGTTATCAGT-CTTTGTCCGTGGAAGAACCGATTTTGCCTGATGATGTTGATTC 2096
Query 2085 CAGCTCAGATGCAGGATCTGTTAACTTTGTCTTTGGAGACTGTACAAATCCATCGACAGT 2144
|||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 2097 CAGCTCAGATGCAGGATCTGTTAACTTTGTCTTTGGAGACTGTACAAATCCATCAACTGT 2156
Query 2145 CTCTCATGAGCCAGCAATCATATTCAGCTGTGTTGATGACTCTGGAAACTGGGGACGAGG 2204
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 2157 CTCTCATGAGCCAGCAATCATATTCAGCTGTGTTGATGACTCTGGAAACTGGGGACGTGG 2216
Query 2205 TGGAATGTTTGATGCTCTGTCAAAACTTTCTAATACTGTACCCGA-TGCGTATCACCGAG 2263
||||||||||||||||||||||||||| ||||||||||||||| | ||| ||||||||||
Sbjct 2217 TGGAATGTTTGATGCTCTGTCAAAACTGTCTAATACTGTACCC-ACTGCTTATCACCGAG 2275
Query 2264 CATCTGAGTTTAAAGACCTCCATCTTGGAGACCTGCATCTCATAAAAATTGATGACAGTG 2323
|||| |||||||||||||| ||||||||||||||||||||||||||||||||||||| ||
Sbjct 2276 CATCCGAGTTTAAAGACCTTCATCTTGGAGACCTGCATCTCATAAAAATTGATGACAATG 2335
Query 2324 ATGATCAACAAAACACAGAAGAAAGTAAACCTCTTTGGGTGGCAGTTGCAGTAACACAAT 2383
|||| |||||||||||| ||| ||| || ||||||||||||||||||||||| |||||||
Sbjct 2336 ATGACCAACAAAACACACAAGCAAGCAAGCCTCTTTGGGTGGCAGTTGCAGTTACACAAT 2395
Query 2384 CTTATAACCCGAGGCGTAAAGTCCCACGTAGTAGCATTTCAATTCCAGACCTTGAACGTT 2443
|||| || ||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 2396 CTTACAATTCGAGGCGTAAAGTCCCACGTAGTAGCATTTCAATTCCAGACCTTGAAAGTT 2455
Query 2444 GCTTGGCCAAAGCTTCATTCTCCGCTTCTCAGAAATCAGCTTCACTCCACATGCCACGTA 2503
|||| ||||||||||||||||| ||||||||||||||||| |||||||||||||||||||
Sbjct 2456 GCTTAGCCAAAGCTTCATTCTCTGCTTCTCAGAAATCAGCCTCACTCCACATGCCACGTA 2515
Query 2504 TTGGTTACCAAGACGGATCAGACCGATCTCAATGGTACACTGTTGAACGTCTTCTTCGCA 2563
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
Sbjct 2516 TTGGTTACCAAGACGGATCAGACCGATCTCAATGGTACACTGTTGAGCGTCTTCTTCGAA 2575
Query 2564 AATACTCCTCCATCTTCGCCGTCAAAATATTCGTGTACTACTACCGTCGATCTCCCTGA 2622
||||||||||||||||| |||||||||||||||||||||| || |||||||||||||||
Sbjct 2576 AATACTCCTCCATCTTCACCGTCAAAATATTCGTGTACTATTATCGTCGATCTCCCTGA 2634
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 130183217085
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5