BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg483631
Length=1054
Score E
Sequences producing significant alignments: (Bits) Value
AT2G45010.1 | Symbols: | PLAC8 family protein | chr2:18567910-... 1703 0.0
> AT2G45010.1 | Symbols: | PLAC8 family protein | chr2:18567910-18569859
FORWARD LENGTH=1114
Length=1114
Score = 1703 bits (922), Expect = 0.0
Identities = 1016/1059 (96%), Gaps = 16/1059 (2%)
Strand=Plus/Plus
Query 1 ATAGACGAGTCACGACGACTCACGCGTATCGAAACAAAACGTTGTTGTTAGAGAGAAAAT 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATAGACGAGTCACGACGACTCACGCGTATCGAAACAAAACGTTGTTGTTAGAGAGAAAAT 60
Query 61 TCCGGTTCTTGGATTCCGGCGACCTCATTGGTGAAAGATCTTCAGAGACTATATTATTAT 120
||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 61 TCCAGTTCTTGGATTCCGGCGACCTCATTGGTGAAAGATCTTCAGAG-----ATTATTAT 115
Query 121 ACCTTTCTCTTGAGCGGTTTCGATGGCGGATGGAAACGCCGCG-TCGCGTTACGTGAAAT 179
| |||||||||| |||||||||||||||||||||||||| | ||||||||||||||||
Sbjct 116 A--TTTCTCTTGACCGGTTTCGATGGCGGATGGAAACGCC-AGTTCGCGTTACGTGAAAT 172
Query 180 TGAGGAAAGAGCAGGCTCCTGTCGAAGAAGATATCACACCCGGTGAACTCAATCAGCCCA 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 173 TGAGGAAAGAGCAGGCTCCTGTCGAAGAAGATATCACACCCGGTGAACTCAATCAGCCCA 232
Query 240 TTGATGTTCCTCAGTTGAATGTCCGCAAGTGCCATGAATGTATGCAAGTTCTACCTGAAA 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 233 TTGATGTTCCTCAGTTGAATGTCCGCAAGTGCCATGAATGTATGCAAGTTCTACCTGAAA 292
Query 300 CCTATGAACCTCCTTCTGATGAAAACTGGACCACCGGCATTTTTGGTTGTGCTGAAGATC 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 293 CCTATGAACCTCCTTCTGATGAAAACTGGACCACCGGCATTTTTGGTTGTGCTGAAGATC 352
Query 360 GAGAGAGCTGCAGGACTGGTCTCTTTTGCCCGTGTGTACTGTTTGGGCGTAACATTGAAG 419
||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||
Sbjct 353 CAGAGAGCTGCAGGACTGGTCTCTTTTGTCCGTGTGTTCTGTTTGGGCGTAACATTGAAG 412
Query 420 CTGTGAGGGAAGAGATTCCTTGGACCCAACCATGTGTATGCCATGCAATATGTGTCGAAG 479
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 413 CTGTGAGGGAAGAGATTCCTTGGACCCAACCATGTGTATGCCATGCTGTATGTGTCGAAG 472
Query 480 GAGGTATGGCACTTGCAGCAGTCACTGCACTCTTCAGTGGCTACATTGATCCTCAAACAA 539
|||||||||||||||||||||| || |||||||||||||||||||||||||| |||||||
Sbjct 473 GAGGTATGGCACTTGCAGCAGTAACCGCACTCTTCAGTGGCTACATTGATCCACAAACAA 532
Query 540 CGGTTGTCATCTGCGAAGGCCTCTTCTTTGCTTGGTGGATGTGTGGAATCTATTCAGGCC 599
| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 533 CAGTTGTGATCTGCGAAGGCCTCTTCTTTGCTTGGTGGATGTGTGGAATCTATTCAGGCT 592
Query 600 TGTTCCGCCAAGAACTCCAGAAGAAATATCATCTCAAGAATGCGCCTTGTGATCATTGCA 659
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 593 TGTTCCGCCAAGAACTCCAGAAGAAATATCATCTCAAGAATGCGCCTTGTGATCATTGCA 652
Query 660 TGGTTCACTGTTGCTTGCACTGGTGTGCTTTGTGCCAGGAACACAGGGAGATGAAGAATC 719
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 653 TGGTTCACTGTTGCTTGCACTGGTGTGCTTTGTGCCAGGAACACAGGGAGATGAAGAATC 712
Query 720 ATCTTTCTGATACAGAAGCCTCATCATCAACTACTATGGATCCTCCCCCAGTTCAAGAGA 779
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 713 ATCTTTCTGATACAGAAGCCTCATCATCAACTACTATGGATCCTCCCCCAGTTCAAGAGA 772
Query 780 TGAACACAGAGGAGAAAAGAGACGCTTCATCTTCTTCGTCTTCATCCCCATCATCTGCCA 839
||||||| ||||||| |||||||||||||||||||||||| |||||||||||||||||||
Sbjct 773 TGAACACTGAGGAGAGAAGAGACGCTTCATCTTCTTCGTCCTCATCCCCATCATCTGCCA 832
Query 840 AAAGCCAACACAATGATCTCGAGATGGTCCCTCTATAGGAAGCATTCCTTATTAATCTCT 899
||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||
Sbjct 833 AAAGCCAACACAATGATCTCGAGATGGTCCCTCTATAGGAAACGTTCCTTATTAATCTCT 892
Query 900 GCTACTTATGCTCTATAAGCTGTTTTTTCTGTGCAGAGAGGTTTTCGTACCAGATGATTC 959
||| |||||||| | |||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct 893 GCTGCTTATGCT-T-TAAGCTGTTTTTTCTGTGCAGAGAAGTTTTCGTACCAGATGACTC 950
Query 960 TGTTGCTC-TTAGGTTTTAAATATGCAAAAGTATGTTTTAAGAACAAGTTCATTAGTA-T 1017
| ||| || ||||||||||||||||||||||| |||| |||||||||||||| ||||| |
Sbjct 951 TATTG-TCCTTAGGTTTTAAATATGCAAAAGTTTGTTCTAAGAACAAGTTCAATAGTACT 1009
Query 1018 -T-AAGTTTTACAGAATTTAAATTCATGACTTCATTGAA 1054
| ||||||||||||| ||||||||||||||||||||||
Sbjct 1010 CTTAAGTTTTACAGAACTTAAATTCATGACTTCATTGAA 1048
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51690937263
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5