BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg483635
Length=1225
Score E
Sequences producing significant alignments: (Bits) Value
AT2G45040.1 | Symbols: | Matrixin family protein | chr2:185776... 1670 0.0
> AT2G45040.1 | Symbols: | Matrixin family protein | chr2:18577650-18578914
FORWARD LENGTH=1265
Length=1265
Score = 1670 bits (904), Expect = 0.0
Identities = 1157/1268 (91%), Gaps = 62/1268 (5%)
Strand=Plus/Plus
Query 1 AAAA-AACAAAAcatctcttcacttcacatcacaccatgcatcatcatcatcatccatGC 59
|||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 8 AAAATAACAAAACATCTCTTCACTTCTCATCACACCATGCATCATCATCATCATCCATGC 67
Query 60 AATCGCAAACCCTTCACAACTATCTTCTTCGTCTCCCTTCTCTATCTCAATCTCCATAAC 119
|||||||||||||||||||| ||||||| | ||| |||||||||||||||||||||||||
Sbjct 68 AATCGCAAACCCTTCACAACCATCTTCTCCTTCTTCCTTCTCTATCTCAATCTCCATAAC 127
Query 120 C--CACA-TATC--A--TCG--A---A--GC----T-CGA--AACCCATCCCCTGACGTC 158
| || | |||| | ||| | | | | ||| ||||||||||||||||||
Sbjct 128 CAACAAATTATCGAAGCTCGAAATCCATCTCAATTTACGACCAACCCATCCCCTGACGTC 187
Query 159 TCTATACCGGAAATCAAACGTCACCTTCAACAGTACGGTTACCTCCCACaaaa-aaaCGA 217
|||||||||||||||||||||||||| |||||||||||||||||||||||||| ||| ||
Sbjct 188 TCTATACCGGAAATCAAACGTCACCTCCAACAGTACGGTTACCTCCCACAAAACAAA-GA 246
Query 218 ACCCGACGATGTTTTGTTCGAGCAAGCTCTCGCTCGTTACCAGAAAAATCTCGGTCTACC 277
| ||||||| |||| |||||| |||||||||| |||||||||||||||||||||||||||
Sbjct 247 ATCCGACGACGTTTCGTTCGAACAAGCTCTCGTTCGTTACCAGAAAAATCTCGGTCTACC 306
Query 278 GATAACCGGGAAACCAGATTCCGACACGTTGTCACAGATTCTATTACCAAGATGTGGATT 337
|||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 307 AATAACCGGTAAACCGGATTCCGACACGTTGTCACAGATTCTATTACCAAGATGTGGGTT 366
Query 338 CCCTGATGACGTGGAACCCAAAACGGCACCGTTTCACACAGGGAAAAAATACGTGTACTT 397
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 367 CCCTGATGACGTGGAACCCAAAACGGCACCGTTTCACACAGGAAAAAAATACGTGTACTT 426
Query 398 CCCTGGACGGCCCAGGTGGACAAGAGACGTCCCACTGAAACTTACGTACGCCTTCTCACA 457
||| |||||||||||||||||||||||||||||||||||||| |||||||||||||| ||
Sbjct 427 CCCCGGACGGCCCAGGTGGACAAGAGACGTCCCACTGAAACTCACGTACGCCTTCTCGCA 486
Query 458 GGAGAACCTAACCCCATACTTAGCACCAACAGACATTCGGCGCGTGTTCCGACGCGCTTT 517
|||||||||||| || |||||||||||||| ||||| |||||||||||||||||||||||
Sbjct 487 GGAGAACCTAACTCCTTACTTAGCACCAACTGACATACGGCGCGTGTTCCGACGCGCTTT 546
Query 518 CGGCAAGTGGGCTTCGGTGATCCCCGTAACCTTCATCGAAACAGAGGATTACGTCATCGC 577
|||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||
Sbjct 547 CGGCAAGTGGGCTTCGGTGATCCCAGTATCCTTCATCGAAACAGAGGATTACGTCATCGC 606
Query 578 CGACATCAAGATCGGATTCTTCAACGGAGATCACGGCGACGGAGAGCCGTTCGACGGCGT 637
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 607 CGACATCAAGATCGGATTCTTCAACGGAGATCACGGCGACGGAGAACCGTTCGACGGCGT 666
Query 638 TTTAGGTGTTTTAGCTCACACTTTCTCGCCGGAAAACGGTAGGCTTCACCTAGACAAAGC 697
||||||||||||||| ||||||||||| |||||||||||||||||||| |||||||||||
Sbjct 667 TTTAGGTGTTTTAGCACACACTTTCTCTCCGGAAAACGGTAGGCTTCATCTAGACAAAGC 726
Query 698 AGAGACGTGGGCCGTTGATTTCAATGAGGAAAAATCTACG-GTGGCCGTCGATTTGGAGT 756
||||||||||||||| |||||| ||||||||||||||| | ||||||||||||||||| |
Sbjct 727 AGAGACGTGGGCCGTAGATTTCGATGAGGAAAAATCTA-GTGTGGCCGTCGATTTGGAAT 785
Query 757 CTGTGGCGGTGCACGAGATCGGTCACGTGCTTGGACTT-GGCCATAGCTCGGTGAAAGAC 815
||||||||||||||||||||||||||||||||||| || || ||||||||||||||||||
Sbjct 786 CTGTGGCGGTGCACGAGATCGGTCACGTGCTTGGA-TTAGGACATAGCTCGGTGAAAGAC 844
Query 816 GCGGCTATGTATCCAACTTTGAAGCCAAGAAGTAAGAAAGTGAATTTGAATATGGACGAC 875
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 845 GCGGCTATGTATCCAACTTTAAAGCCAAGAAGTAAGAAAGTGAATTTGAATATGGACGAC 904
Query 876 GTCGTTGGAGTACAGTCTTTGTACGGAACAAACCCTAATTTCACGTTAAGTAGTTTACTT 935
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 905 GTCGTTGGAGTACAGTCTTTGTACGGAACAAACCCTAATTTCACGTTAAATAGTTTACTT 964
Query 936 GCGTCGGAAACTTCGACCAACCTAGCCGATGATGGTTCGATGAGACGGTCTCAAGGAATG 995
||||||||||||||||| || |||||||||| | ||||| || ||||||||||||||||
Sbjct 965 GCGTCGGAAACTTCGACAAATCTAGCCGATG--G-TTCGAGGATACGGTCTCAAGGAATG 1021
Query 996 ATCTATTCGACTTTGAGTACAGTTATCGCTCTCTGTTTTCTTAATTGGTAG-----A-A- 1048
|||||||||||||||||||| |||||||||||||||||||||||||||||| | |
Sbjct 1022 ATCTATTCGACTTTGAGTACTGTTATCGCTCTCTGTTTTCTTAATTGGTAGTTCGTAGAC 1081
Query 1049 TT---TA-----CTTTATACAAGAAATCTGAAAACGTATAGAAGAATCATACAGACACAT 1100
|| || |||||||||||||||| |||||||||||||| |||||||||| |||
Sbjct 1082 TTAGATAATTTTCTTTATACAAGAAATCCGAAAACGTATAGAA---TCATACAGACGCAT 1138
Query 1101 GAAAATTATTAATTTGTTGTTCAAAGTAGTAGTCTAATCTTATGTTTATGTTTAGAATAA 1160
||| || | |||||||||||||||||||||||| ||||||| ||||||||||||
Sbjct 1139 GAA--TT-T------GTTGTTCAAAGTAGTAGTCTAATCCTATGTTTCTGTTTAGAATAA 1189
Query 1161 --C-ATTGTTCTTTTTTAGTTTATATTTGATTGGGCTTCAAATTATACGGCCCAATAGAA 1217
| || |||||||||||||||||||| ||||||||||||| ||||||||||||||||||
Sbjct 1190 TACCAT-GTTCTTTTTTAGTTTATATTAGATTGGGCTTCAAGTTATACGGCCCAATAGAA 1248
Query 1218 TGCTGATG 1225
|||| |||
Sbjct 1249 TGCTAATG 1256
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60190453455
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5