BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg483635 Length=1225 Score E Sequences producing significant alignments: (Bits) Value AT2G45040.1 | Symbols: | Matrixin family protein | chr2:185776... 1670 0.0 > AT2G45040.1 | Symbols: | Matrixin family protein | chr2:18577650-18578914 FORWARD LENGTH=1265 Length=1265 Score = 1670 bits (904), Expect = 0.0 Identities = 1157/1268 (91%), Gaps = 62/1268 (5%) Strand=Plus/Plus Query 1 AAAA-AACAAAAcatctcttcacttcacatcacaccatgcatcatcatcatcatccatGC 59 |||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 8 AAAATAACAAAACATCTCTTCACTTCTCATCACACCATGCATCATCATCATCATCCATGC 67 Query 60 AATCGCAAACCCTTCACAACTATCTTCTTCGTCTCCCTTCTCTATCTCAATCTCCATAAC 119 |||||||||||||||||||| ||||||| | ||| ||||||||||||||||||||||||| Sbjct 68 AATCGCAAACCCTTCACAACCATCTTCTCCTTCTTCCTTCTCTATCTCAATCTCCATAAC 127 Query 120 C--CACA-TATC--A--TCG--A---A--GC----T-CGA--AACCCATCCCCTGACGTC 158 | || | |||| | ||| | | | | ||| |||||||||||||||||| Sbjct 128 CAACAAATTATCGAAGCTCGAAATCCATCTCAATTTACGACCAACCCATCCCCTGACGTC 187 Query 159 TCTATACCGGAAATCAAACGTCACCTTCAACAGTACGGTTACCTCCCACaaaa-aaaCGA 217 |||||||||||||||||||||||||| |||||||||||||||||||||||||| ||| || Sbjct 188 TCTATACCGGAAATCAAACGTCACCTCCAACAGTACGGTTACCTCCCACAAAACAAA-GA 246 Query 218 ACCCGACGATGTTTTGTTCGAGCAAGCTCTCGCTCGTTACCAGAAAAATCTCGGTCTACC 277 | ||||||| |||| |||||| |||||||||| ||||||||||||||||||||||||||| Sbjct 247 ATCCGACGACGTTTCGTTCGAACAAGCTCTCGTTCGTTACCAGAAAAATCTCGGTCTACC 306 Query 278 GATAACCGGGAAACCAGATTCCGACACGTTGTCACAGATTCTATTACCAAGATGTGGATT 337 |||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| || Sbjct 307 AATAACCGGTAAACCGGATTCCGACACGTTGTCACAGATTCTATTACCAAGATGTGGGTT 366 Query 338 CCCTGATGACGTGGAACCCAAAACGGCACCGTTTCACACAGGGAAAAAATACGTGTACTT 397 |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 367 CCCTGATGACGTGGAACCCAAAACGGCACCGTTTCACACAGGAAAAAAATACGTGTACTT 426 Query 398 CCCTGGACGGCCCAGGTGGACAAGAGACGTCCCACTGAAACTTACGTACGCCTTCTCACA 457 ||| |||||||||||||||||||||||||||||||||||||| |||||||||||||| || Sbjct 427 CCCCGGACGGCCCAGGTGGACAAGAGACGTCCCACTGAAACTCACGTACGCCTTCTCGCA 486 Query 458 GGAGAACCTAACCCCATACTTAGCACCAACAGACATTCGGCGCGTGTTCCGACGCGCTTT 517 |||||||||||| || |||||||||||||| ||||| ||||||||||||||||||||||| Sbjct 487 GGAGAACCTAACTCCTTACTTAGCACCAACTGACATACGGCGCGTGTTCCGACGCGCTTT 546 Query 518 CGGCAAGTGGGCTTCGGTGATCCCCGTAACCTTCATCGAAACAGAGGATTACGTCATCGC 577 |||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||| Sbjct 547 CGGCAAGTGGGCTTCGGTGATCCCAGTATCCTTCATCGAAACAGAGGATTACGTCATCGC 606 Query 578 CGACATCAAGATCGGATTCTTCAACGGAGATCACGGCGACGGAGAGCCGTTCGACGGCGT 637 ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 607 CGACATCAAGATCGGATTCTTCAACGGAGATCACGGCGACGGAGAACCGTTCGACGGCGT 666 Query 638 TTTAGGTGTTTTAGCTCACACTTTCTCGCCGGAAAACGGTAGGCTTCACCTAGACAAAGC 697 ||||||||||||||| ||||||||||| |||||||||||||||||||| ||||||||||| Sbjct 667 TTTAGGTGTTTTAGCACACACTTTCTCTCCGGAAAACGGTAGGCTTCATCTAGACAAAGC 726 Query 698 AGAGACGTGGGCCGTTGATTTCAATGAGGAAAAATCTACG-GTGGCCGTCGATTTGGAGT 756 ||||||||||||||| |||||| ||||||||||||||| | ||||||||||||||||| | Sbjct 727 AGAGACGTGGGCCGTAGATTTCGATGAGGAAAAATCTA-GTGTGGCCGTCGATTTGGAAT 785 Query 757 CTGTGGCGGTGCACGAGATCGGTCACGTGCTTGGACTT-GGCCATAGCTCGGTGAAAGAC 815 ||||||||||||||||||||||||||||||||||| || || |||||||||||||||||| Sbjct 786 CTGTGGCGGTGCACGAGATCGGTCACGTGCTTGGA-TTAGGACATAGCTCGGTGAAAGAC 844 Query 816 GCGGCTATGTATCCAACTTTGAAGCCAAGAAGTAAGAAAGTGAATTTGAATATGGACGAC 875 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 845 GCGGCTATGTATCCAACTTTAAAGCCAAGAAGTAAGAAAGTGAATTTGAATATGGACGAC 904 Query 876 GTCGTTGGAGTACAGTCTTTGTACGGAACAAACCCTAATTTCACGTTAAGTAGTTTACTT 935 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 905 GTCGTTGGAGTACAGTCTTTGTACGGAACAAACCCTAATTTCACGTTAAATAGTTTACTT 964 Query 936 GCGTCGGAAACTTCGACCAACCTAGCCGATGATGGTTCGATGAGACGGTCTCAAGGAATG 995 ||||||||||||||||| || |||||||||| | ||||| || |||||||||||||||| Sbjct 965 GCGTCGGAAACTTCGACAAATCTAGCCGATG--G-TTCGAGGATACGGTCTCAAGGAATG 1021 Query 996 ATCTATTCGACTTTGAGTACAGTTATCGCTCTCTGTTTTCTTAATTGGTAG-----A-A- 1048 |||||||||||||||||||| |||||||||||||||||||||||||||||| | | Sbjct 1022 ATCTATTCGACTTTGAGTACTGTTATCGCTCTCTGTTTTCTTAATTGGTAGTTCGTAGAC 1081 Query 1049 TT---TA-----CTTTATACAAGAAATCTGAAAACGTATAGAAGAATCATACAGACACAT 1100 || || |||||||||||||||| |||||||||||||| |||||||||| ||| Sbjct 1082 TTAGATAATTTTCTTTATACAAGAAATCCGAAAACGTATAGAA---TCATACAGACGCAT 1138 Query 1101 GAAAATTATTAATTTGTTGTTCAAAGTAGTAGTCTAATCTTATGTTTATGTTTAGAATAA 1160 ||| || | |||||||||||||||||||||||| ||||||| |||||||||||| Sbjct 1139 GAA--TT-T------GTTGTTCAAAGTAGTAGTCTAATCCTATGTTTCTGTTTAGAATAA 1189 Query 1161 --C-ATTGTTCTTTTTTAGTTTATATTTGATTGGGCTTCAAATTATACGGCCCAATAGAA 1217 | || |||||||||||||||||||| ||||||||||||| |||||||||||||||||| Sbjct 1190 TACCAT-GTTCTTTTTTAGTTTATATTAGATTGGGCTTCAAGTTATACGGCCCAATAGAA 1248 Query 1218 TGCTGATG 1225 |||| ||| Sbjct 1249 TGCTAATG 1256 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 60190453455 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5