BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg483640
Length=489
Score E
Sequences producing significant alignments: (Bits) Value
AT2G45070.1 | Symbols: SEC61 BETA | Preprotein translocase Sec,... 667 0.0
AT3G60540.1 | Symbols: | Preprotein translocase Sec, Sec61-bet... 248 3e-65
> AT2G45070.1 | Symbols: SEC61 BETA | Preprotein translocase Sec,
Sec61-beta subunit protein | chr2:18587082-18588259 REVERSE
LENGTH=458
Length=458
Score = 667 bits (361), Expect = 0.0
Identities = 421/449 (94%), Gaps = 7/449 (2%)
Strand=Plus/Plus
Query 43 GAAAGTCTTCAAATCTCTCCGTCACGAATCGTTCCCTCGTCGTCATCAGAATTTGTAAGC 102
|||||||||||||||||||||||||||||||||| ||||||||||||| ||| ||| |||
Sbjct 1 GAAAGTCTTCAAATCTCTCCGTCACGAATCGTTCTCTCGTCGTCATCAAAATCTGTTAGC 60
Query 103 CGAATCAGGTAGAGAAAACAAGAAAGAATGGTGGGTAGTGGAGCTCCACAGAGAGGAAGT 162
|||||| |||||||| |||||||||||||||| ||||||||||||||||||||||||
Sbjct 61 CGAATC----AGAGAAAAGAAGAAAGAATGGTGGGAAGTGGAGCTCCACAGAGAGGAAGT 116
Query 163 GCAGCTGCAACTGCAAGCATGCGTAGGAGGAAGCCGGCAAGTGGTGCTGGTGGAGGAGGA 222
|||||||||||||||||||||||||||||||||||| | || |||||||||||||||||
Sbjct 117 GCAGCTGCAACTGCAAGCATGCGTAGGAGGAAGCCGACCAGCGGTGCTGGTGGAGGAGGT 176
Query 223 GCCTCTGGTGGTGCAGCTGGATCCATGCTTCAGTTCTACACCGATGACGCACCCGGTCTT 282
||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct 177 GCCTCTGGTGGTGCAGCCGGATCCATGCTTCAGTTCTACACCGATGACGCACCTGGTCTC 236
Query 283 AAGATCTCCCCCAATGTTGTCCTTATCATGAGCATCGGTTTCATTGCTTTCGTCGCGGTT 342
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct 237 AAGATCTCCCCCAATGTTGTTCTTATCATGAGCATCGGTTTCATTGCTTTCGTCGCTGTG 296
Query 343 CTTCATGTTATGGGCAAGCTCTACTTTGTCAAGTGATGAGAAAGATAATAGTTGAAGACA 402
|||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||
Sbjct 297 CTTCATGTTATGGGCAAGCTCTACTTTGTCAAATGATGACAAAGATAATAGTTGAAGACA 356
Query 403 -TCGCCACCCTAAGTGACTGCTAGTGATCAAAATATTAGACAGTGGTTTCA-GTTAATGT 460
| |||||||||||||||||||||||||| |||||||| |||||||||||| ||||||||
Sbjct 357 AT-GCCACCCTAAGTGACTGCTAGTGATCCAAATATTATACAGTGGTTTCAAGTTAATGT 415
Query 461 TTTAATTTTGTGGTTTATTACCTGAGTAT 489
|||||||||||||||||||||| ||||||
Sbjct 416 TTTAATTTTGTGGTTTATTACCAGAGTAT 444
> AT3G60540.1 | Symbols: | Preprotein translocase Sec, Sec61-beta
subunit protein | chr3:22374963-22375865 REVERSE LENGTH=481
Length=481
Score = 248 bits (134), Expect = 3e-65
Identities = 246/297 (83%), Gaps = 20/297 (7%)
Strand=Plus/Plus
Query 87 ATCAGAATTTGTAAGCCGAATCAGGTAGAGAAAACAAG-A---AAG----AATGGTGGGT 138
||||||| ||| ||||||||||| || || |||||||| | ||| |||||| |||
Sbjct 19 ATCAGAAATTG-AAGCCGAATCA-GTTGA-AAAACAAGAAGTGAAGCAAAAATGGTTGGT 75
Query 139 AGTGGAGCTCCACAGAGAGGAAGTGCAGCTGCAACTGCAAGCATGCGTAGGAGGAAGCCG 198
|||||||||||||||||||||||||||||||||||||||||||| | |||||||||||
Sbjct 76 GGTGGAGCTCCACAGAGAGGAAGTGCAGCTGCAACTGCAAGCATGAGGAGGAGGAAGCCT 135
Query 199 GCAAGTGGTGCTGGTGGAGGAGGAGCCTCTGGTGGTGCAGCTGGATCCATGCTTCAGTTC 258
|| ||||| | | || || ||| ||||||| ||||||| | ||||||||||||
Sbjct 136 GC---TGGTG--GCAGCAGCAGC-GCC---GGTGGTGGAGCTGGAACAATGCTTCAGTTC 186
Query 259 TACACCGATGACGCACCCGGTCTTAAGATCTCCCCCAATGTTGTCCTTATCATGAGCATC 318
||||| || ||||| || ||||| ||||| || || |||||||| ||||||||||||||
Sbjct 187 TACACAGACGACGCGCCTGGTCTCAAGATATCTCCAAATGTTGTTCTTATCATGAGCATT 246
Query 319 GGTTTCATTGCTTTCGTCGCGGTTCTTCATGTTATGGGCAAGCTCTACTTTGTCAAG 375
|||||||||||||| || || ||||||||||| ||||| |||||||| |||||||||
Sbjct 247 GGTTTCATTGCTTTTGTAGCTGTTCTTCATGTCATGGGTAAGCTCTATTTTGTCAAG 303
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 23308644208
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5