BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg483641
Length=691
Score E
Sequences producing significant alignments: (Bits) Value
AT2G45080.1 | Symbols: cycp3;1 | cyclin p3;1 | chr2:18591665-18... 1144 0.0
AT3G60550.1 | Symbols: CYCP3;2 | cyclin p3;2 | chr3:22379805-22... 560 6e-159
> AT2G45080.1 | Symbols: cycp3;1 | cyclin p3;1 | chr2:18591665-18592455
FORWARD LENGTH=704
Length=704
Score = 1144 bits (619), Expect = 0.0
Identities = 668/692 (97%), Gaps = 2/692 (0%)
Strand=Plus/Plus
Query 1 CCCATTAAGTTTCTCCGATCAATGTATTCTCTAGCGATTTCTCCGAGGAAGCTCCGATCA 60
||||| |||||||||||||||||| |||| |||||||||||||| |||||||||||||||
Sbjct 3 CCCATAAAGTTTCTCCGATCAATGGATTCCCTAGCGATTTCTCCAAGGAAGCTCCGATCA 62
Query 61 GACCTCTACTCATACTCTTACCAAGATGACTCCAACACAGTACCTCTAGTCATCTCTGTA 120
||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 63 GACCTCTACTCTTACTCTTACCAAGATGATTCCAACACAGTACCTCTAGTCATCTCTGTT 122
Query 121 CTCTCGTCTCTGATCGAACGGACTTTGGCTAGGAACGAGAGAATCAGCCGGAGCTACGGT 180
|||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct 123 CTCTCGTCTCTGATCGAACGAACTTTAGCTAGGAACGAGAGAATCAGCCGGAGCTACGGT 182
Query 181 GGTTTTGGTAAGACACGTGTCTTTGATTGCCGGGAGATTCCTGATATGACTATTCAATCA 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 183 GGTTTTGGTAAGACACGTGTCTTTGATTGCCGGGAGATTCCTGATATGACTATTCAATCA 242
Query 241 TACCTAGAGAGGATTTTCCGGTATACCAAAGCCGGTCCATCGGTTTACGTCGTTGCCTAT 300
||||||||||| ||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 243 TACCTAGAGAGAATTTTCCGGTATACCAAAGCCGGTCCATCGGTTTACGTCGTGGCTTAT 302
Query 301 GTATACATTGATCGGTTCTGTCAGAATAACCAAGGTTTCAGAATCAGT-TTAACCAATGT 359
||||||||||| |||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 303 GTATACATTGACCGGTTCTGTCAGAATAACCAAGGTTTCAGAATCAGTCTT-ACCAATGT 361
Query 360 ACATCGTCTCCTTATCACAACTATCATGATCGCTTCCAAATACGTCGAAGATATGAACTA 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 362 ACATCGTCTCCTTATCACAACTATCATGATCGCTTCCAAATACGTCGAAGATATGAACTA 421
Query 420 TAGAAACTCGTACTTTGCGAAAGTAGGAGGATTAGAGACAGAAGATTTGAACAATTTGGA 479
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 422 CAAAAACTCGTACTTTGCGAAAGTAGGAGGATTAGAGACAGAAGATTTGAACAATTTGGA 481
Query 480 ACTGGAGTTCTTGTTCTTGATGGGATTTAAGTTGCATGTGAATGTGAGTGTGTTCGAGAG 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 482 ACTGGAGTTCTTGTTCTTGATGGGATTTAAGTTGCATGTGAATGTGAGTGTGTTCGAGAG 541
Query 540 TTACTGTTGTCATCTTGAAAGAGAAGTTAGTATCGGAGGAGGTTATCAGATCGAAAAGGC 599
||||||||||||||| ||||||||||| ||||| ||||||||||||||||||||||| ||
Sbjct 542 TTACTGTTGTCATCTAGAAAGAGAAGTGAGTATTGGAGGAGGTTATCAGATCGAAAAAGC 601
Query 600 ATTACGTTGCGCTGAGGAAATCAAATCTAGACAAATTGTTCAAGATCCTAAACATCATCA 659
||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 602 ATTGCGTTGCGCTGAGGAAATCAAATCTAGACAAATTGTTCAAGACCCTAAACATCATCA 661
Query 660 TCACCATCAATTTTCTCGAATCTTGTTGTAGT 691
|||||||||||||||||||||| |||||||||
Sbjct 662 TCACCATCAATTTTCTCGAATCATGTTGTAGT 693
> AT3G60550.1 | Symbols: CYCP3;2 | cyclin p3;2 | chr3:22379805-22380641
FORWARD LENGTH=734
Length=734
Score = 560 bits (303), Expect = 6e-159
Identities = 565/688 (82%), Gaps = 31/688 (5%)
Strand=Plus/Plus
Query 26 ATTCTCTAGCGATTTCTCCGAGGAAGCTCCGATCAGACCTCTACTCATACTCTTACCAAG 85
||||| || | || ||||||||||| ||||| || || || ||||||||||| ||||||
Sbjct 55 ATTCTTTAACAATCTCTCCGAGGAAACTCCGGTCTGATCTTTACTCATACTCATACCAAA 114
Query 86 ATGACTCCAACACAGTACCTCTAGTCATCTCTGTACTCTCGTCTCTGATCGAACGGACTT 145
| | ||||| || |||||| || |||||||| || ||||| ||||| || || |||
Sbjct 115 ACAATTCCAAGAC---ACCTCTGGTTATCTCTGTTCTATCGTCACTGATTGATCGAACTC 171
Query 146 TGGCTAGGAACGAGAGAATCAGCC-G-GA-----G-----CTACGGTGGTTTTGGTAAGA 193
|| || | |||||||| || |||| | || | || ||| | ||| || |
Sbjct 172 TGACTCGAAACGAGAGGATTAGCCGGAGAGCTTTGCCTTCCTCCGGCGCCGGTGGCAAAA 231
Query 194 CACGTG-TCTTTGATTGCCGGGAGATTCCTGATATGACTATTCAATCATACCTAGAGAGG 252
| | | ||||||||||||| || || ||||||||||| || || |||||||||| |||
Sbjct 232 CTC-AGATCTTTGATTGCCGAGAAATCCCTGATATGACCATCCAGTCATACCTAGGGAGA 290
Query 253 ATTTTCCGGTATACCAAAGCCGGTCCATCGGTTTACGTCGTTGCCTATGTATACATTGAT 312
||||||||||| || ||||||||||| ||||||||||| || || ||||| ||||||||
Sbjct 291 ATTTTCCGGTACACTAAAGCCGGTCCTTCGGTTTACGTGGTGGCTTATGTCTACATTGAC 350
Query 313 CGGTTCTGTCAGAA-TAA-CCAAGGTTTCAGAATCAGTTTAACCAATGTACATCGTCTCC 370
||||||||||| || || || ||||| ||||||||| | || |||||||||||||| |
Sbjct 351 CGGTTCTGTCA-AACCAATCC-CGGTTTTAGAATCAGTCTCACTAATGTACATCGTCTAC 408
Query 371 TTATCACAACTATCATGATCGCTTCCAAATACGTCGAAGATATGAACTATAGAAACTCGT 430
| ||||| || |||||||||||||| ||||||||||||||| |||||||||| || || |
Sbjct 409 TCATCACTACCATCATGATCGCTTCTAAATACGTCGAAGATTTGAACTATAGGAATTCAT 468
Query 431 ACTTTGCGAAAGTAGGAGGATTAGAGACAGAAGATTTGAACAATTTGGAACTGGAG-TTC 489
| |||||||||||||| ||| |||||||||| |||||||| || || || | ||| |||
Sbjct 469 ATTTTGCGAAAGTAGGTGGACTAGAGACAGAGGATTTGAATAAGTTAGAGTTAGAGTTTC 528
Query 490 TTGTTCTTGATGGGATTTAAGTTGCATGTGAATGTGAGTGTGTTCGAGAGTTACTGTTGT 549
|||||||||||||||||||| | ||||||||||||||||||||||||||||| ||||||
Sbjct 529 -TGTTCTTGATGGGATTTAAGCTACATGTGAATGTGAGTGTGTTCGAGAGTTATTGTTGT 587
Query 550 CATCTTGAAAGAGAAGTTAG-TATCGGAGGAGGTTATCAGATCGAAAAGGCATTACGTTG 608
|||||||||||||| ||||| | | |||||||||||||||||||| |||||||| |||||
Sbjct 588 CATCTTGAAAGAGAGGTTAGCTTT-GGAGGAGGTTATCAGATCGAGAAGGCATTGCGTTG 646
Query 609 CGCTGAGGAAATCAAATCTAGACAAAT--TG-TTCAAGATCCTAAACATCATCATCACCA 665
|||||||||||||||||| |||||||| | ||||||||||||||||||||||||| ||
Sbjct 647 CGCTGAGGAAATCAAATCCAGACAAATGATCATTCAAGATCCTAAACATCATCATCATCA 706
Query 666 TCA--ATTTT-CTCGAATCTTGTTGTAG 690
||| | || |||||||||||||||||
Sbjct 707 TCATCAGCTTGCTCGAATCTTGTTGTAG 734
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33455941902
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5