BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg483641 Length=691 Score E Sequences producing significant alignments: (Bits) Value AT2G45080.1 | Symbols: cycp3;1 | cyclin p3;1 | chr2:18591665-18... 1144 0.0 AT3G60550.1 | Symbols: CYCP3;2 | cyclin p3;2 | chr3:22379805-22... 560 6e-159 > AT2G45080.1 | Symbols: cycp3;1 | cyclin p3;1 | chr2:18591665-18592455 FORWARD LENGTH=704 Length=704 Score = 1144 bits (619), Expect = 0.0 Identities = 668/692 (97%), Gaps = 2/692 (0%) Strand=Plus/Plus Query 1 CCCATTAAGTTTCTCCGATCAATGTATTCTCTAGCGATTTCTCCGAGGAAGCTCCGATCA 60 ||||| |||||||||||||||||| |||| |||||||||||||| ||||||||||||||| Sbjct 3 CCCATAAAGTTTCTCCGATCAATGGATTCCCTAGCGATTTCTCCAAGGAAGCTCCGATCA 62 Query 61 GACCTCTACTCATACTCTTACCAAGATGACTCCAACACAGTACCTCTAGTCATCTCTGTA 120 ||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 63 GACCTCTACTCTTACTCTTACCAAGATGATTCCAACACAGTACCTCTAGTCATCTCTGTT 122 Query 121 CTCTCGTCTCTGATCGAACGGACTTTGGCTAGGAACGAGAGAATCAGCCGGAGCTACGGT 180 |||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||| Sbjct 123 CTCTCGTCTCTGATCGAACGAACTTTAGCTAGGAACGAGAGAATCAGCCGGAGCTACGGT 182 Query 181 GGTTTTGGTAAGACACGTGTCTTTGATTGCCGGGAGATTCCTGATATGACTATTCAATCA 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 183 GGTTTTGGTAAGACACGTGTCTTTGATTGCCGGGAGATTCCTGATATGACTATTCAATCA 242 Query 241 TACCTAGAGAGGATTTTCCGGTATACCAAAGCCGGTCCATCGGTTTACGTCGTTGCCTAT 300 ||||||||||| ||||||||||||||||||||||||||||||||||||||||| || ||| Sbjct 243 TACCTAGAGAGAATTTTCCGGTATACCAAAGCCGGTCCATCGGTTTACGTCGTGGCTTAT 302 Query 301 GTATACATTGATCGGTTCTGTCAGAATAACCAAGGTTTCAGAATCAGT-TTAACCAATGT 359 ||||||||||| |||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 303 GTATACATTGACCGGTTCTGTCAGAATAACCAAGGTTTCAGAATCAGTCTT-ACCAATGT 361 Query 360 ACATCGTCTCCTTATCACAACTATCATGATCGCTTCCAAATACGTCGAAGATATGAACTA 419 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 362 ACATCGTCTCCTTATCACAACTATCATGATCGCTTCCAAATACGTCGAAGATATGAACTA 421 Query 420 TAGAAACTCGTACTTTGCGAAAGTAGGAGGATTAGAGACAGAAGATTTGAACAATTTGGA 479 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 422 CAAAAACTCGTACTTTGCGAAAGTAGGAGGATTAGAGACAGAAGATTTGAACAATTTGGA 481 Query 480 ACTGGAGTTCTTGTTCTTGATGGGATTTAAGTTGCATGTGAATGTGAGTGTGTTCGAGAG 539 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 482 ACTGGAGTTCTTGTTCTTGATGGGATTTAAGTTGCATGTGAATGTGAGTGTGTTCGAGAG 541 Query 540 TTACTGTTGTCATCTTGAAAGAGAAGTTAGTATCGGAGGAGGTTATCAGATCGAAAAGGC 599 ||||||||||||||| ||||||||||| ||||| ||||||||||||||||||||||| || Sbjct 542 TTACTGTTGTCATCTAGAAAGAGAAGTGAGTATTGGAGGAGGTTATCAGATCGAAAAAGC 601 Query 600 ATTACGTTGCGCTGAGGAAATCAAATCTAGACAAATTGTTCAAGATCCTAAACATCATCA 659 ||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 602 ATTGCGTTGCGCTGAGGAAATCAAATCTAGACAAATTGTTCAAGACCCTAAACATCATCA 661 Query 660 TCACCATCAATTTTCTCGAATCTTGTTGTAGT 691 |||||||||||||||||||||| ||||||||| Sbjct 662 TCACCATCAATTTTCTCGAATCATGTTGTAGT 693 > AT3G60550.1 | Symbols: CYCP3;2 | cyclin p3;2 | chr3:22379805-22380641 FORWARD LENGTH=734 Length=734 Score = 560 bits (303), Expect = 6e-159 Identities = 565/688 (82%), Gaps = 31/688 (5%) Strand=Plus/Plus Query 26 ATTCTCTAGCGATTTCTCCGAGGAAGCTCCGATCAGACCTCTACTCATACTCTTACCAAG 85 ||||| || | || ||||||||||| ||||| || || || ||||||||||| |||||| Sbjct 55 ATTCTTTAACAATCTCTCCGAGGAAACTCCGGTCTGATCTTTACTCATACTCATACCAAA 114 Query 86 ATGACTCCAACACAGTACCTCTAGTCATCTCTGTACTCTCGTCTCTGATCGAACGGACTT 145 | | ||||| || |||||| || |||||||| || ||||| ||||| || || ||| Sbjct 115 ACAATTCCAAGAC---ACCTCTGGTTATCTCTGTTCTATCGTCACTGATTGATCGAACTC 171 Query 146 TGGCTAGGAACGAGAGAATCAGCC-G-GA-----G-----CTACGGTGGTTTTGGTAAGA 193 || || | |||||||| || |||| | || | || ||| | ||| || | Sbjct 172 TGACTCGAAACGAGAGGATTAGCCGGAGAGCTTTGCCTTCCTCCGGCGCCGGTGGCAAAA 231 Query 194 CACGTG-TCTTTGATTGCCGGGAGATTCCTGATATGACTATTCAATCATACCTAGAGAGG 252 | | | ||||||||||||| || || ||||||||||| || || |||||||||| ||| Sbjct 232 CTC-AGATCTTTGATTGCCGAGAAATCCCTGATATGACCATCCAGTCATACCTAGGGAGA 290 Query 253 ATTTTCCGGTATACCAAAGCCGGTCCATCGGTTTACGTCGTTGCCTATGTATACATTGAT 312 ||||||||||| || ||||||||||| ||||||||||| || || ||||| |||||||| Sbjct 291 ATTTTCCGGTACACTAAAGCCGGTCCTTCGGTTTACGTGGTGGCTTATGTCTACATTGAC 350 Query 313 CGGTTCTGTCAGAA-TAA-CCAAGGTTTCAGAATCAGTTTAACCAATGTACATCGTCTCC 370 ||||||||||| || || || ||||| ||||||||| | || |||||||||||||| | Sbjct 351 CGGTTCTGTCA-AACCAATCC-CGGTTTTAGAATCAGTCTCACTAATGTACATCGTCTAC 408 Query 371 TTATCACAACTATCATGATCGCTTCCAAATACGTCGAAGATATGAACTATAGAAACTCGT 430 | ||||| || |||||||||||||| ||||||||||||||| |||||||||| || || | Sbjct 409 TCATCACTACCATCATGATCGCTTCTAAATACGTCGAAGATTTGAACTATAGGAATTCAT 468 Query 431 ACTTTGCGAAAGTAGGAGGATTAGAGACAGAAGATTTGAACAATTTGGAACTGGAG-TTC 489 | |||||||||||||| ||| |||||||||| |||||||| || || || | ||| ||| Sbjct 469 ATTTTGCGAAAGTAGGTGGACTAGAGACAGAGGATTTGAATAAGTTAGAGTTAGAGTTTC 528 Query 490 TTGTTCTTGATGGGATTTAAGTTGCATGTGAATGTGAGTGTGTTCGAGAGTTACTGTTGT 549 |||||||||||||||||||| | ||||||||||||||||||||||||||||| |||||| Sbjct 529 -TGTTCTTGATGGGATTTAAGCTACATGTGAATGTGAGTGTGTTCGAGAGTTATTGTTGT 587 Query 550 CATCTTGAAAGAGAAGTTAG-TATCGGAGGAGGTTATCAGATCGAAAAGGCATTACGTTG 608 |||||||||||||| ||||| | | |||||||||||||||||||| |||||||| ||||| Sbjct 588 CATCTTGAAAGAGAGGTTAGCTTT-GGAGGAGGTTATCAGATCGAGAAGGCATTGCGTTG 646 Query 609 CGCTGAGGAAATCAAATCTAGACAAAT--TG-TTCAAGATCCTAAACATCATCATCACCA 665 |||||||||||||||||| |||||||| | ||||||||||||||||||||||||| || Sbjct 647 CGCTGAGGAAATCAAATCCAGACAAATGATCATTCAAGATCCTAAACATCATCATCATCA 706 Query 666 TCA--ATTTT-CTCGAATCTTGTTGTAG 690 ||| | || ||||||||||||||||| Sbjct 707 TCATCAGCTTGCTCGAATCTTGTTGTAG 734 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 33455941902 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5